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README.md
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pipeline_tag: image-segmentation
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tags:
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- biology
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pipeline_tag: image-segmentation
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tags:
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- biology
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---
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Transcription Run-On Grants Detection Of Regulatory elements (TROGDOR).
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TROGDOR identifies transcription initiation regions (TIRs) from stranded nascent RNA sequencing data
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(GRO-seq, PRO-seq, ChRO-seq, mNET-seq, etc.). It uses a 1D U-Net model and a tiled image segmentation
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approach to achieve SOTA performance at predicting TIRs while maintaining computational efficiency.
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The TROGDOR pipeline (including model module) can be installed using `pip install trogdor`, or from
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the source code at https://github.com/adamyhe/trogdor
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