dREG / config.json
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{
"svm": {
"model_type": "dreg_svr",
"file": "svm.model.safetensors.zst",
"framework": "safetensors",
"kernel": "rbf",
"svm_type": "epsilon_svr",
"libsvm_kernel_type": 2,
"libsvm_svm_type": 3,
"n_support_vectors": 605187,
"n_features": 360,
"gamma": 0.00277777777777778,
"rho": 0.520706653594971,
"epsilon": 0.1,
"cost": 1,
"y_center": 0.0303030303030303,
"y_scale": 0.171419851714898,
"genomic_data_model": {
"window_sizes": [10, 25, 50, 500, 5000],
"half_n_windows": [10, 10, 30, 20, 20],
"note": "Feature layout this SVR was trained on -- a model is only meaningful relative to the exact feature layout it was trained on, so always use these values with this model rather than re-deriving them."
},
"source": "asvm.gdm.6.6M.20170828.rdata (https://zenodo.org/records/10113379), Danko-Lab/dREG"
},
"rf": {
"model_type": "dreg_peak_split_forest",
"file": "rf.model.safetensors.zst",
"framework": "safetensors",
"algorithm": "random_forest_regression",
"n_trees": 500,
"max_nodes_per_tree": 153,
"n_features": 10,
"feature_names": ["dist", "r1", "r2", "y1", "y2", "maxy", "d1", "d2", "d3", "dr"],
"source": "rf-model-201803.RDS (Danko-Lab/dREG, dREG/inst/extdata/)"
}
}