Add models and configuration files.

config.json

@@ -0,0 +1,53 @@
+{
+  "modality": "mr",
+  "labels": [
+    0,
+    1,
+    2,
+    3,
+    4
+  ],
+  "final_classes": {
+    "netc": [
+      1
+    ],
+    "snfh": [
+      2
+    ],
+    "et": [
+      3
+    ],
+    "rc": [
+      4
+    ],
+    "tc": [
+      1,
+      3
+    ],
+    "wt": [
+      1,
+      2,
+      3
+    ]
+  },
+  "crop_to_fg": true,
+  "use_nz_mask": true,
+  "target_spacing": [
+    1.0,
+    1.0,
+    1.0
+  ],
+  "median_image_size": [
+    135,
+    172,
+    140
+  ],
+  "patch_size": [
+    128,
+    128,
+    128
+  ],
+  "mist_version": "0.2.1b0",
+  "patch_overlap": 0.5,
+  "patch_blend_mode": "gaussian"
+}

models/fold_0.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:18d9375737b1cc651a69e0a22abf2f575b4e8843e0d3dce866c03a5a1b5c405c
+size 3119618

models/fold_1.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e9fd735c538bab423ab0e5f64b3b38ee30924fcb89eaae3f68c81be511b37b33
+size 3119618

models/fold_2.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ee131811b5d5a9a6fa6686db1ab17dbe51cb0decff91d7a6e49ac455123951cf
+size 3119618

models/fold_3.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e5b0f1ae2ba34ec1a978c783f9526b26e77920ff9caac4bdba9d3ded2ac921ad
+size 3119618

models/fold_4.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b9c244c44e8a0d1791045a4baa2fc85244640bff0d5ab961b0cfcf93c7359e2f
+size 3119618

models/model_config.json

@@ -0,0 +1,18 @@
+{
+  "model_name": "nnunet",
+  "n_channels": 4,
+  "n_classes": 5,
+  "deep_supervision": true,
+  "pocket": true,
+  "patch_size": [
+    128,
+    128,
+    128
+  ],
+  "target_spacing": [
+    1.0,
+    1.0,
+    1.0
+  ],
+  "use_res_block": true
+}

postprocess.json

@@ -0,0 +1,22 @@
+[
+  {
+    "transform": "get_top_k_connected_components",
+    "apply_to_labels": [1, 2, 3],
+    "apply_sequentially": false,
+    "kwargs": {
+      "top_k": 1,
+      "morph_cleanup": true,
+      "morph_cleanup_iterations": 2
+    }
+  },
+  {
+    "transform": "get_top_k_connected_components",
+    "apply_to_labels": [4],
+    "apply_sequentially": true,
+    "kwargs": {
+      "top_k": 1,
+      "morph_cleanup": true,
+      "morph_cleanup_iterations": 2
+    }
+  }
+]