Upload 12 files

added_tokens.json

@@ -0,0 +1,40 @@
+{
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+  "\t\t\t": 50293,
+  "\t\t\t\t": 50292,
+  "\t\t\t\t\t": 50291,
+  "\t\t\t\t\t\t": 50290,
+  "\t\t\t\t\t\t\t": 50289,
+  "\t\t\t\t\t\t\t\t": 50288,
+  "\t\t\t\t\t\t\t\t\t": 50287,
+  "  ": 50286,
+  "   ": 50285,
+  "    ": 50284,
+  "     ": 50283,
+  "      ": 50282,
+  "       ": 50281,
+  "        ": 50280,
+  "         ": 50279,
+  "          ": 50278,
+  "           ": 50277,
+  "            ": 50276,
+  "             ": 50275,
+  "              ": 50274,
+  "               ": 50273,
+  "                ": 50272,
+  "                 ": 50271,
+  "                  ": 50270,
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+  "                    ": 50268,
+  "                     ": 50267,
+  "                      ": 50266,
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+  "                         ": 50263,
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+  "                            ": 50260,
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+  "                              ": 50258,
+  "                               ": 50257
+}

config.json

@@ -1,12 +1,12 @@
 {
-  "_name_or_path": "microsoft/phi-1_5",
+  "_name_or_path": "ai4colonoscopy/ColonGPT-v1",
   "architectures": [
-    "PhiForCausalLM"
+    "ColongptPhiForCausalLM"
   ],
   "attention_dropout": 0.0,
   "auto_map": {
-    "AutoConfig": "configuration_phi.PhiConfig",
-    "AutoModelForCausalLM": "modeling_phi.PhiForCausalLM"
+    "AutoConfig": "configuration_colongpt_phi.ColongptPhiConfig",
+    "AutoModelForCausalLM": "modeling_colongpt_phi.ColongptPhiForCausalLM"
   },
   "bos_token_id": 50256,
   "embd_pdrop": 0.0,
@@ -35,12 +35,12 @@
   "tie_word_embeddings": false,
   "tokenizer_model_max_length": 2048,
   "tokenizer_padding_side": "right",
-  "torch_dtype": "float16",
+  "torch_dtype": "bfloat16",
   "transformers_version": "4.42.3",
   "tune_mm_mlp_adapter": true,
   "unfreeze_vision_tower": false,
   "use_cache": true,
   "use_mm_proj": true,
   "use_s2": false,
-  "vocab_size": 51200
+  "vocab_size": 50295
 }

configuration_colongpt_phi.py

@@ -0,0 +1,253 @@
+# coding=utf-8
+# Copyright 2023 Microsoft and the HuggingFace Inc. team. All rights reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+""" Phi model configuration"""
+
+from transformers.configuration_utils import PretrainedConfig
+from transformers.utils import logging
+
+logger = logging.get_logger(__name__)
+
+PHI_PRETRAINED_CONFIG_ARCHIVE_MAP = {
+    "microsoft/phi-1": "https://huggingface.co/microsoft/phi-1/resolve/main/config.json",
+    "microsoft/phi-1_5": "https://huggingface.co/microsoft/phi-1_5/resolve/main/config.json",
+    "microsoft/phi-2": "https://huggingface.co/microsoft/phi-2/resolve/main/config.json",
+}
+
+
+class PhiConfig(PretrainedConfig):
+    r"""
+    This is the configuration class to store the configuration of a [`PhiModel`]. It is used to instantiate an Phi
+    model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
+    defaults will yield a similar configuration to that of the Phi
+    [microsoft/phi-1](https://huggingface.co/microsoft/phi-1).
+
+    Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
+    documentation from [`PretrainedConfig`] for more information.
+
+    Args:
+        vocab_size (`int`, *optional*, defaults to 51200):
+            Vocabulary size of the Phi model. Defines the number of different tokens that can be represented by the
+            `inputs_ids` passed when calling [`PhiModel`].
+        hidden_size (`int`, *optional*, defaults to 2048):
+            Dimension of the hidden representations.
+        intermediate_size (`int`, *optional*, defaults to 8192):
+            Dimension of the MLP representations.
+        num_hidden_layers (`int`, *optional*, defaults to 24):
+            Number of hidden layers in the Transformer decoder.
+        num_attention_heads (`int`, *optional*, defaults to 32):
+            Number of attention heads for each attention layer in the Transformer decoder.
+        num_key_value_heads (`int`, *optional*):
+            This is the number of key_value heads that should be used to implement Grouped Query Attention. If
+            `num_key_value_heads=num_attention_heads`, the model will use Multi Head Attention (MHA), if
+            `num_key_value_heads=1 the model will use Multi Query Attention (MQA) otherwise GQA is used. When
+            converting a multi-head checkpoint to a GQA checkpoint, each group key and value head should be constructed
+            by meanpooling all the original heads within that group. For more details checkout [this
+            paper](https://arxiv.org/pdf/2305.13245.pdf). If it is not specified, will default to
+            `num_attention_heads`.
+        resid_pdrop (`float`, *optional*, defaults to 0.0):
+            Dropout probability for mlp outputs.
+        embd_pdrop (`int`, *optional*, defaults to 0.0):
+            The dropout ratio for the embeddings.
+        attention_dropout (`float`, *optional*, defaults to 0.0):
+            The dropout ratio after computing the attention scores.
+        hidden_act (`str` or `function`, *optional*, defaults to `"gelu_new"`):
+            The non-linear activation function (function or string) in the decoder.
+        max_position_embeddings (`int`, *optional*, defaults to 2048):
+            The maximum sequence length that this model might ever be used with. Phi-1 and Phi-1.5 supports up to 2048
+            tokens.
+        initializer_range (`float`, *optional*, defaults to 0.02):
+            The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
+        layer_norm_eps (`float`, *optional*, defaults to 1e-05):
+            The epsilon used by the rms normalization layers.
+        use_cache (`bool`, *optional*, defaults to `True`):
+            Whether or not the model should return the last key/values attentions (not used by all models). Only
+            relevant if `config.is_decoder=True`. Whether to tie weight embeddings or not.
+        tie_word_embeddings (`bool`, *optional*, defaults to `False`):
+            Whether to tie weight embeddings
+        rope_theta (`float`, *optional*, defaults to 10000.0):
+            The base period of the RoPE embeddings.
+        rope_scaling (`Dict`, *optional*):
+            Dictionary containing the scaling configuration for the RoPE embeddings. Currently supports two scaling
+            strategies: linear and dynamic. Their scaling factor must be an float greater than 1. The expected format
+            is `{"type": strategy name, "factor": scaling factor}`. When using this flag, don't update
+            `max_position_embeddings` to the expected new maximum. See the following thread for more information on how
+            these scaling strategies behave:
+            https://www.reddit.com/r/LocalPersimmon/comments/14mrgpr/dynamically_scaled_rope_further_increases/. This
+            is an experimental feature, subject to breaking API changes in future versions.
+        partial_rotary_factor (`float`, *optional*, defaults to 0.5):
+            Percentage of the query and keys which will have rotary embedding.
+        qk_layernorm (`bool`, *optional*, defaults to `False`):
+            Whether or not to normalize the Queries and Keys after projecting the hidden states.
+        bos_token_id (`int`, *optional*, defaults to 1):
+            Denotes beginning of sequences token id.
+        eos_token_id (`int`, *optional*, defaults to 2):
+            Denotes end of sequences token id.
+
+    Example:
+
+    ```python
+    >>> from transformers import PhiModel, PhiConfig
+
+    >>> # Initializing a Phi-1 style configuration
+    >>> configuration = PhiConfig.from_pretrained("microsoft/phi-1")
+
+    >>> # Initializing a model from the configuration
+    >>> model = PhiModel(configuration)
+
+    >>> # Accessing the model configuration
+    >>> configuration = model.config
+    ```"""
+
+    model_type = "phi"
+    keys_to_ignore_at_inference = ["past_key_values"]
+
+    def __init__(
+            self,
+            vocab_size=51200,
+            hidden_size=2048,
+            intermediate_size=8192,
+            num_hidden_layers=24,
+            num_attention_heads=32,
+            num_key_value_heads=None,
+            resid_pdrop=0.0,
+            embd_pdrop=0.0,
+            attention_dropout=0.0,
+            hidden_act="gelu_new",
+            max_position_embeddings=2048,
+            initializer_range=0.02,
+            layer_norm_eps=1e-5,
+            use_cache=True,
+            tie_word_embeddings=False,
+            rope_theta=10000.0,
+            rope_scaling=None,
+            partial_rotary_factor=0.5,
+            qk_layernorm=False,
+            bos_token_id=1,
+            eos_token_id=2,
+            **kwargs,
+    ):
+        self.vocab_size = vocab_size
+        self.hidden_size = hidden_size
+        self.intermediate_size = intermediate_size
+        self.num_hidden_layers = num_hidden_layers
+        self.num_attention_heads = num_attention_heads
+
+        if num_key_value_heads is None:
+            num_key_value_heads = num_attention_heads
+
+        self.num_key_value_heads = num_key_value_heads
+        self.resid_pdrop = resid_pdrop
+        self.embd_pdrop = embd_pdrop
+        self.attention_dropout = attention_dropout
+        self.hidden_act = hidden_act
+        self.max_position_embeddings = max_position_embeddings
+        self.initializer_range = initializer_range
+        self.layer_norm_eps = layer_norm_eps
+        self.use_cache = use_cache
+        self.rope_theta = rope_theta
+        self.rope_scaling = rope_scaling
+        self.partial_rotary_factor = partial_rotary_factor
+        self.qk_layernorm = qk_layernorm
+        self._rope_scaling_validation()
+
+        super().__init__(
+            bos_token_id=bos_token_id,
+            eos_token_id=eos_token_id,
+            tie_word_embeddings=tie_word_embeddings,
+            **kwargs,
+        )
+
+    # Copied from transformers.models.llama.configuration_llama.LlamaConfig._rope_scaling_validation
+    def _rope_scaling_validation(self):
+        """
+        Validate the `rope_scaling` configuration.
+        """
+        if self.rope_scaling is None:
+            return
+
+        if not isinstance(self.rope_scaling, dict) or len(self.rope_scaling) != 2:
+            raise ValueError(
+                "`rope_scaling` must be a dictionary with with two fields, `type` and `factor`, "
+                f"got {self.rope_scaling}"
+            )
+        rope_scaling_type = self.rope_scaling.get("type", None)
+        rope_scaling_factor = self.rope_scaling.get("factor", None)
+        if rope_scaling_type is None or rope_scaling_type not in ["linear", "dynamic"]:
+            raise ValueError(
+                f"`rope_scaling`'s type field must be one of ['linear', 'dynamic'], got {rope_scaling_type}"
+            )
+        if rope_scaling_factor is None or not isinstance(rope_scaling_factor, float) or rope_scaling_factor <= 1.0:
+            raise ValueError(f"`rope_scaling`'s factor field must be a float > 1, got {rope_scaling_factor}")
+
+
+from typing import Union
+from transformers import PretrainedConfig
+import os
+
+
+class SigLipVisionConfig(PretrainedConfig):
+    model_type = "siglip_vision_model"
+
+    def __init__(
+            self,
+            hidden_size=1152,
+            image_mean=(0.5, 0.5, 0.5),
+            intermediate_size=4304,
+            num_hidden_layers=27,
+            num_attention_heads=16,
+            num_channels=3,
+            image_size=384,
+            patch_size=14,
+            hidden_act="gelu_pytorch_tanh",
+            layer_norm_eps=1e-6,
+            attention_dropout=0.0,
+            **kwargs,
+    ):
+        super().__init__(**kwargs)
+
+        self.hidden_size = hidden_size
+        self.intermediate_size = intermediate_size
+        self.num_hidden_layers = num_hidden_layers
+        self.num_attention_heads = num_attention_heads
+        self.num_channels = num_channels
+        self.patch_size = patch_size
+        self.image_size = image_size
+        self.attention_dropout = attention_dropout
+        self.layer_norm_eps = layer_norm_eps
+        self.hidden_act = hidden_act
+        self.image_mean = image_mean
+
+    @classmethod
+    def from_pretrained(cls, pretrained_model_name_or_path: Union[str, os.PathLike], **kwargs) -> "PretrainedConfig":
+        cls._set_token_in_kwargs(kwargs)
+
+        config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
+
+        # get the vision config dict if we are loading from SigLipConfig
+        if config_dict.get("model_type") == "siglip":
+            config_dict = config_dict["vision_config"]
+
+        if "model_type" in config_dict and hasattr(cls, "model_type") and config_dict["model_type"] != cls.model_type:
+            logger.warning(
+                f"You are using a model of type {config_dict['model_type']} to instantiate a model of type "
+                f"{cls.model_type}. This is not supported for all configurations of models and can yield errors."
+            )
+
+        return cls.from_dict(config_dict, **kwargs)
+
+
+class ColongptPhiConfig(PhiConfig):
+    model_type = "colongpt-phi"

generation_config.json

@@ -0,0 +1,4 @@
+{
+  "_from_model_config": true,
+  "transformers_version": "4.42.3"
+}

model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8f41f783937174320a0e7a575586f945dcd15ae151069e43d3fc373920d4b748
+size 3774201480

special_tokens_map.json

@@ -0,0 +1,23 @@
+{
+  "bos_token": {
+    "content": "<|endoftext|>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "eos_token": {
+    "content": "<|endoftext|>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "unk_token": {
+    "content": "<|endoftext|>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

@@ -0,0 +1,324 @@
+{
+  "add_prefix_space": false,
+  "added_tokens_decoder": {
+    "50256": {
+      "content": "<|endoftext|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "50257": {
+      "content": "                               ",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": false
+    },
+    "50258": {
+      "content": "                              ",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": false
+    },
+    "50259": {
+      "content": "                             ",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": false
+    },
+    "50260": {
+      "content": "                            ",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": false
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+    "50261": {
+      "content": "                           ",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": false
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+      "content": "                          ",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
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+      "single_word": false,
+      "special": false
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+    }
+  },
+  "bos_token": "<|endoftext|>",
+  "clean_up_tokenization_spaces": true,
+  "eos_token": "<|endoftext|>",
+  "model_max_length": 2048,
+  "return_token_type_ids": false,
+  "tokenizer_class": "CodeGenTokenizer",
+  "unk_token": "<|endoftext|>"
+}