| { |
| "best_metric": 0.5021652673442333, |
| "best_model_checkpoint": "/mimer/NOBACKUP/groups/naiss2023-6-290/stefano/models//PROTAC-Splitter-EncoderDecoder-lr_cosine-opt25/trial-number=18-learning_rate=2.0e-04-warmup_ratio=0.010-num_cycles=2.500/checkpoint-5000", |
| "epoch": 0.49319392385085814, |
| "eval_steps": 2500, |
| "global_step": 5000, |
| "is_hyper_param_search": true, |
| "is_local_process_zero": true, |
| "is_world_process_zero": true, |
| "log_history": [ |
| { |
| "epoch": 0.049319392385085814, |
| "grad_norm": 0.6551521420478821, |
| "learning_rate": 0.00014340124668857647, |
| "loss": 1.5229, |
| "step": 500 |
| }, |
| { |
| "epoch": 0.09863878477017163, |
| "grad_norm": 0.33902546763420105, |
| "learning_rate": 0.0001878001438351963, |
| "loss": 0.0906, |
| "step": 1000 |
| }, |
| { |
| "epoch": 0.14795817715525744, |
| "grad_norm": 0.1665482521057129, |
| "learning_rate": 0.00012191951719773646, |
| "loss": 0.024, |
| "step": 1500 |
| }, |
| { |
| "epoch": 0.19727756954034326, |
| "grad_norm": 0.0971766784787178, |
| "learning_rate": 4.1475601830154605e-05, |
| "loss": 0.0107, |
| "step": 2000 |
| }, |
| { |
| "epoch": 0.24659696192542907, |
| "grad_norm": 0.1026405617594719, |
| "learning_rate": 5.005669712982349e-07, |
| "loss": 0.0063, |
| "step": 2500 |
| }, |
| { |
| "epoch": 0.2959163543105149, |
| "grad_norm": 0.13334587216377258, |
| "learning_rate": 2.6516320374474144e-05, |
| "loss": 0.0059, |
| "step": 3000 |
| }, |
| { |
| "epoch": 0.3452357466956007, |
| "grad_norm": 0.15596552193164825, |
| "learning_rate": 0.00010204873010150722, |
| "loss": 0.008, |
| "step": 3500 |
| }, |
| { |
| "epoch": 0.3945551390806865, |
| "grad_norm": 0.13316264748573303, |
| "learning_rate": 0.00017636456261024047, |
| "loss": 0.0177, |
| "step": 4000 |
| }, |
| { |
| "epoch": 0.4438745314657723, |
| "grad_norm": 0.20416474342346191, |
| "learning_rate": 0.00019954772889767774, |
| "loss": 0.0124, |
| "step": 4500 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "grad_norm": 0.10144529491662979, |
| "learning_rate": 0.00015602667506056428, |
| "loss": 0.0083, |
| "step": 5000 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "eval_all_ligands_equal": 0.5021652673442333, |
| "eval_e3_equal": 0.7853292090145824, |
| "eval_e3_graph_edit_distance": 9.999999999999999e+63, |
| "eval_e3_graph_edit_distance_norm": 1.0, |
| "eval_e3_has_attachment_point(s)": 0.9720724701723376, |
| "eval_e3_heavy_atoms_difference": 1.070967741935484, |
| "eval_e3_heavy_atoms_difference_norm": 0.027758721897316797, |
| "eval_e3_tanimoto_similarity": 0.0, |
| "eval_e3_valid": 0.9720724701723376, |
| "eval_has_all_attachment_points": 0.9681838267786125, |
| "eval_has_three_substructures": 0.9967300044189129, |
| "eval_heavy_atoms_difference": 10.814228899690676, |
| "eval_heavy_atoms_difference_norm": 0.13911716976370936, |
| "eval_linker_equal": 0.7400795404330535, |
| "eval_linker_graph_edit_distance": 9.999999999999999e+63, |
| "eval_linker_graph_edit_distance_norm": 1.0, |
| "eval_linker_has_attachment_point(s)": 0.9931064958020327, |
| "eval_linker_heavy_atoms_difference": 0.5992929739284136, |
| "eval_linker_heavy_atoms_difference_norm": 0.010982995551670276, |
| "eval_linker_tanimoto_similarity": 0.0, |
| "eval_linker_valid": 0.9931064958020327, |
| "eval_loss": 0.28404873609542847, |
| "eval_num_fragments": 2.9961113566062747, |
| "eval_poi_equal": 0.7383119752540875, |
| "eval_poi_graph_edit_distance": 9.999999999999999e+63, |
| "eval_poi_graph_edit_distance_norm": 1.0, |
| "eval_poi_has_attachment_point(s)": 0.9011047282368537, |
| "eval_poi_heavy_atoms_difference": 3.4031816173221388, |
| "eval_poi_heavy_atoms_difference_norm": 0.10832716160390982, |
| "eval_poi_tanimoto_similarity": 0.0, |
| "eval_poi_valid": 0.9011047282368537, |
| "eval_reassembly": 0.5109147149801149, |
| "eval_reassembly_nostereo": 0.5356606274856386, |
| "eval_runtime": 1588.2721, |
| "eval_samples_per_second": 7.124, |
| "eval_steps_per_second": 0.111, |
| "eval_tanimoto_similarity": 0.0, |
| "eval_valid": 0.8764471939902784, |
| "step": 5000 |
| } |
| ], |
| "logging_steps": 500, |
| "max_steps": 10000, |
| "num_input_tokens_seen": 0, |
| "num_train_epochs": 1, |
| "save_steps": 5000, |
| "stateful_callbacks": { |
| "TrainerControl": { |
| "args": { |
| "should_epoch_stop": false, |
| "should_evaluate": false, |
| "should_log": false, |
| "should_save": true, |
| "should_training_stop": false |
| }, |
| "attributes": {} |
| } |
| }, |
| "total_flos": 4.33139477262336e+16, |
| "train_batch_size": 128, |
| "trial_name": "trial-number=18-learning_rate=2.0e-04-warmup_ratio=0.010-num_cycles=2.500", |
| "trial_params": { |
| "learning_rate": 0.0002004749428706299, |
| "num_cycles": 2.5, |
| "warmup_ratio": 0.01 |
| } |
| } |
|
|