| { |
| "best_metric": 0.41069376933274415, |
| "best_model_checkpoint": "/mimer/NOBACKUP/groups/naiss2023-6-290/stefano/models//PROTAC-Splitter-EncoderDecoder-lr_reduce-opt25/trial-number=4-learning_rate=1.1e-05-warmup_ratio=0.030-min_lr=0.000-factor=0.940/checkpoint-10000", |
| "epoch": 0.9863878477017163, |
| "eval_steps": 2500, |
| "global_step": 10000, |
| "is_hyper_param_search": true, |
| "is_local_process_zero": true, |
| "is_world_process_zero": true, |
| "log_history": [ |
| { |
| "epoch": 0.049319392385085814, |
| "grad_norm": 1.135282278060913, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 1.7205, |
| "step": 500 |
| }, |
| { |
| "epoch": 0.09863878477017163, |
| "grad_norm": 0.9048516750335693, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.5893, |
| "step": 1000 |
| }, |
| { |
| "epoch": 0.14795817715525744, |
| "grad_norm": 0.8448904156684875, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.3625, |
| "step": 1500 |
| }, |
| { |
| "epoch": 0.19727756954034326, |
| "grad_norm": 0.67970210313797, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.2509, |
| "step": 2000 |
| }, |
| { |
| "epoch": 0.24659696192542907, |
| "grad_norm": 0.7555980682373047, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.1866, |
| "step": 2500 |
| }, |
| { |
| "epoch": 0.2959163543105149, |
| "grad_norm": 0.5226275324821472, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.147, |
| "step": 3000 |
| }, |
| { |
| "epoch": 0.3452357466956007, |
| "grad_norm": 0.3435736298561096, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.1174, |
| "step": 3500 |
| }, |
| { |
| "epoch": 0.3945551390806865, |
| "grad_norm": 0.33571186661720276, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0952, |
| "step": 4000 |
| }, |
| { |
| "epoch": 0.4438745314657723, |
| "grad_norm": 0.4317052662372589, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0774, |
| "step": 4500 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "grad_norm": 0.4251234829425812, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0646, |
| "step": 5000 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "eval_all_ligands_equal": 0.1314184710561202, |
| "eval_e3_equal": 0.6642509942554131, |
| "eval_e3_graph_edit_distance": 9.999999999999999e+63, |
| "eval_e3_graph_edit_distance_norm": 1.0, |
| "eval_e3_has_attachment_point(s)": 0.9954927087936367, |
| "eval_e3_heavy_atoms_difference": -0.1652673442333186, |
| "eval_e3_heavy_atoms_difference_norm": -0.0189775084827908, |
| "eval_e3_tanimoto_similarity": 0.0, |
| "eval_e3_valid": 0.9954927087936367, |
| "eval_has_all_attachment_points": 0.9818824569155987, |
| "eval_has_three_substructures": 0.9983208130799823, |
| "eval_heavy_atoms_difference": 9.841184268669908, |
| "eval_heavy_atoms_difference_norm": 0.1288377887017133, |
| "eval_linker_equal": 0.21767565178965975, |
| "eval_linker_graph_edit_distance": 9.999999999999999e+63, |
| "eval_linker_graph_edit_distance_norm": 1.0, |
| "eval_linker_has_attachment_point(s)": 0.9942554131683606, |
| "eval_linker_heavy_atoms_difference": 2.058241272646929, |
| "eval_linker_heavy_atoms_difference_norm": 0.07612205467495885, |
| "eval_linker_tanimoto_similarity": 0.0, |
| "eval_linker_valid": 0.9942554131683606, |
| "eval_loss": 0.300495982170105, |
| "eval_num_fragments": 2.999381352187362, |
| "eval_poi_equal": 0.5985859478568272, |
| "eval_poi_graph_edit_distance": 9.999999999999999e+63, |
| "eval_poi_graph_edit_distance_norm": 1.0, |
| "eval_poi_has_attachment_point(s)": 0.900309323906319, |
| "eval_poi_heavy_atoms_difference": 3.2072470172337604, |
| "eval_poi_heavy_atoms_difference_norm": 0.10008980427814149, |
| "eval_poi_tanimoto_similarity": 0.0, |
| "eval_poi_valid": 0.900309323906319, |
| "eval_reassembly": 0.13442333186036234, |
| "eval_reassembly_nostereo": 0.1504197967300044, |
| "eval_runtime": 1571.3971, |
| "eval_samples_per_second": 7.201, |
| "eval_steps_per_second": 0.113, |
| "eval_tanimoto_similarity": 0.0, |
| "eval_valid": 0.8950066283694211, |
| "step": 5000 |
| }, |
| { |
| "epoch": 0.542513316235944, |
| "grad_norm": 0.4560946822166443, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0539, |
| "step": 5500 |
| }, |
| { |
| "epoch": 0.5918327086210298, |
| "grad_norm": 0.28064244985580444, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0459, |
| "step": 6000 |
| }, |
| { |
| "epoch": 0.6411521010061156, |
| "grad_norm": 0.279048353433609, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0399, |
| "step": 6500 |
| }, |
| { |
| "epoch": 0.6904714933912014, |
| "grad_norm": 0.28535017371177673, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0349, |
| "step": 7000 |
| }, |
| { |
| "epoch": 0.7397908857762873, |
| "grad_norm": 0.2345045953989029, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0311, |
| "step": 7500 |
| }, |
| { |
| "epoch": 0.7397908857762873, |
| "eval_all_ligands_equal": 0.31975254087494476, |
| "eval_e3_equal": 0.7414935925762263, |
| "eval_e3_graph_edit_distance": 9.999999999999999e+63, |
| "eval_e3_graph_edit_distance_norm": 1.0, |
| "eval_e3_has_attachment_point(s)": 0.9930181175430844, |
| "eval_e3_heavy_atoms_difference": 0.23756076005302695, |
| "eval_e3_heavy_atoms_difference_norm": -9.951114981210329e-05, |
| "eval_e3_tanimoto_similarity": 0.0, |
| "eval_e3_valid": 0.9930181175430844, |
| "eval_has_all_attachment_points": 0.9832081307998233, |
| "eval_has_three_substructures": 0.9982324348210341, |
| "eval_heavy_atoms_difference": 8.244454264250994, |
| "eval_heavy_atoms_difference_norm": 0.10871833846438654, |
| "eval_linker_equal": 0.4819266460450729, |
| "eval_linker_graph_edit_distance": 9.999999999999999e+63, |
| "eval_linker_graph_edit_distance_norm": 1.0, |
| "eval_linker_has_attachment_point(s)": 0.9954043305346885, |
| "eval_linker_heavy_atoms_difference": 0.9907202828104287, |
| "eval_linker_heavy_atoms_difference_norm": 0.023780405382435494, |
| "eval_linker_tanimoto_similarity": 0.0, |
| "eval_linker_valid": 0.9954043305346885, |
| "eval_loss": 0.295632004737854, |
| "eval_num_fragments": 3.000353513035793, |
| "eval_poi_equal": 0.6684931506849315, |
| "eval_poi_graph_edit_distance": 9.999999999999999e+63, |
| "eval_poi_graph_edit_distance_norm": 1.0, |
| "eval_poi_has_attachment_point(s)": 0.9179849756959788, |
| "eval_poi_heavy_atoms_difference": 2.835528060097216, |
| "eval_poi_heavy_atoms_difference_norm": 0.08970608654557162, |
| "eval_poi_tanimoto_similarity": 0.0, |
| "eval_poi_valid": 0.9179849756959788, |
| "eval_reassembly": 0.3252319929297393, |
| "eval_reassembly_nostereo": 0.3522757401679187, |
| "eval_runtime": 1456.0998, |
| "eval_samples_per_second": 7.771, |
| "eval_steps_per_second": 0.122, |
| "eval_tanimoto_similarity": 0.0, |
| "eval_valid": 0.9111798497569598, |
| "step": 7500 |
| }, |
| { |
| "epoch": 0.789110278161373, |
| "grad_norm": 0.28123733401298523, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0265, |
| "step": 8000 |
| }, |
| { |
| "epoch": 0.8384296705464589, |
| "grad_norm": 0.24425843358039856, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0236, |
| "step": 8500 |
| }, |
| { |
| "epoch": 0.8877490629315447, |
| "grad_norm": 0.24540802836418152, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0209, |
| "step": 9000 |
| }, |
| { |
| "epoch": 0.9370684553166305, |
| "grad_norm": 0.225132018327713, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0192, |
| "step": 9500 |
| }, |
| { |
| "epoch": 0.9863878477017163, |
| "grad_norm": 0.22183990478515625, |
| "learning_rate": 1.0718650414525622e-05, |
| "loss": 0.0172, |
| "step": 10000 |
| }, |
| { |
| "epoch": 0.9863878477017163, |
| "eval_all_ligands_equal": 0.41069376933274415, |
| "eval_e3_equal": 0.7672116659301812, |
| "eval_e3_graph_edit_distance": 9.999999999999999e+63, |
| "eval_e3_graph_edit_distance_norm": 1.0, |
| "eval_e3_has_attachment_point(s)": 0.9932832523199293, |
| "eval_e3_heavy_atoms_difference": 0.29164825452938575, |
| "eval_e3_heavy_atoms_difference_norm": 0.0027889377232460147, |
| "eval_e3_tanimoto_similarity": 0.0, |
| "eval_e3_valid": 0.9932832523199293, |
| "eval_has_all_attachment_points": 0.983738400353513, |
| "eval_has_three_substructures": 0.9990278391515687, |
| "eval_heavy_atoms_difference": 8.101723376049492, |
| "eval_heavy_atoms_difference_norm": 0.10700669432541757, |
| "eval_linker_equal": 0.598232434821034, |
| "eval_linker_graph_edit_distance": 9.999999999999999e+63, |
| "eval_linker_graph_edit_distance_norm": 1.0, |
| "eval_linker_has_attachment_point(s)": 0.994962439239947, |
| "eval_linker_heavy_atoms_difference": 0.9996464869642068, |
| "eval_linker_heavy_atoms_difference_norm": 0.03566936969040077, |
| "eval_linker_tanimoto_similarity": 0.0, |
| "eval_linker_valid": 0.994962439239947, |
| "eval_loss": 0.29776647686958313, |
| "eval_num_fragments": 3.0007954043305345, |
| "eval_poi_equal": 0.7079982324348211, |
| "eval_poi_graph_edit_distance": 9.999999999999999e+63, |
| "eval_poi_graph_edit_distance_norm": 1.0, |
| "eval_poi_has_attachment_point(s)": 0.9185152452496685, |
| "eval_poi_heavy_atoms_difference": 2.548298718515245, |
| "eval_poi_heavy_atoms_difference_norm": 0.07894069428466077, |
| "eval_poi_tanimoto_similarity": 0.0, |
| "eval_poi_valid": 0.9185152452496685, |
| "eval_reassembly": 0.4183826778612461, |
| "eval_reassembly_nostereo": 0.4470172337604949, |
| "eval_runtime": 1468.5838, |
| "eval_samples_per_second": 7.705, |
| "eval_steps_per_second": 0.121, |
| "eval_tanimoto_similarity": 0.0, |
| "eval_valid": 0.9102076889085285, |
| "step": 10000 |
| } |
| ], |
| "logging_steps": 500, |
| "max_steps": 10000, |
| "num_input_tokens_seen": 0, |
| "num_train_epochs": 1, |
| "save_steps": 5000, |
| "stateful_callbacks": { |
| "TrainerControl": { |
| "args": { |
| "should_epoch_stop": false, |
| "should_evaluate": false, |
| "should_log": false, |
| "should_save": true, |
| "should_training_stop": true |
| }, |
| "attributes": {} |
| } |
| }, |
| "total_flos": 8.663036348367667e+16, |
| "train_batch_size": 128, |
| "trial_name": "trial-number=4-learning_rate=1.1e-05-warmup_ratio=0.030-min_lr=0.000-factor=0.940", |
| "trial_params": { |
| "factor": 0.9400000000000001, |
| "learning_rate": 1.0718650414525622e-05, |
| "min_lr": 3.3284513007278865e-10, |
| "warmup_ratio": 0.03 |
| } |
| } |
|
|