| { |
| "best_metric": 0.5058771542200619, |
| "best_model_checkpoint": "/mimer/NOBACKUP/groups/naiss2023-6-290/stefano/models//PROTAC-Splitter-EncoderDecoder-lr_reduce-opt25/trial-number=18-learning_rate=4.6e-05-warmup_ratio=0.040-min_lr=0.000-factor=0.820/checkpoint-5000", |
| "epoch": 0.49319392385085814, |
| "eval_steps": 2500, |
| "global_step": 5000, |
| "is_hyper_param_search": true, |
| "is_local_process_zero": true, |
| "is_world_process_zero": true, |
| "log_history": [ |
| { |
| "epoch": 0.049319392385085814, |
| "grad_norm": 0.6691174507141113, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.9843, |
| "step": 500 |
| }, |
| { |
| "epoch": 0.09863878477017163, |
| "grad_norm": 0.477989137172699, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.1813, |
| "step": 1000 |
| }, |
| { |
| "epoch": 0.14795817715525744, |
| "grad_norm": 0.28420594334602356, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0718, |
| "step": 1500 |
| }, |
| { |
| "epoch": 0.19727756954034326, |
| "grad_norm": 0.27486521005630493, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0395, |
| "step": 2000 |
| }, |
| { |
| "epoch": 0.24659696192542907, |
| "grad_norm": 0.2175276130437851, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0251, |
| "step": 2500 |
| }, |
| { |
| "epoch": 0.2959163543105149, |
| "grad_norm": 0.1922473907470703, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0177, |
| "step": 3000 |
| }, |
| { |
| "epoch": 0.3452357466956007, |
| "grad_norm": 0.18892481923103333, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0139, |
| "step": 3500 |
| }, |
| { |
| "epoch": 0.3945551390806865, |
| "grad_norm": 0.1161535456776619, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0111, |
| "step": 4000 |
| }, |
| { |
| "epoch": 0.4438745314657723, |
| "grad_norm": 0.16154514253139496, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0088, |
| "step": 4500 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "grad_norm": 0.16088169813156128, |
| "learning_rate": 4.606381292021688e-05, |
| "loss": 0.0078, |
| "step": 5000 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "eval_all_ligands_equal": 0.5058771542200619, |
| "eval_e3_equal": 0.7961113566062749, |
| "eval_e3_graph_edit_distance": 9.999999999999999e+63, |
| "eval_e3_graph_edit_distance_norm": 1.0, |
| "eval_e3_has_attachment_point(s)": 0.9840919133893062, |
| "eval_e3_heavy_atoms_difference": 0.6767123287671233, |
| "eval_e3_heavy_atoms_difference_norm": 0.015499968999404092, |
| "eval_e3_tanimoto_similarity": 0.0, |
| "eval_e3_valid": 0.9840919133893062, |
| "eval_has_all_attachment_points": 0.9769332744144941, |
| "eval_has_three_substructures": 0.9985859478568272, |
| "eval_heavy_atoms_difference": 7.977021652673442, |
| "eval_heavy_atoms_difference_norm": 0.105252234591077, |
| "eval_linker_equal": 0.7311533362792753, |
| "eval_linker_graph_edit_distance": 9.999999999999999e+63, |
| "eval_linker_graph_edit_distance_norm": 1.0, |
| "eval_linker_has_attachment_point(s)": 0.9948740609809986, |
| "eval_linker_heavy_atoms_difference": 0.3779938135218736, |
| "eval_linker_heavy_atoms_difference_norm": 0.0009991271739602798, |
| "eval_linker_tanimoto_similarity": 0.0, |
| "eval_linker_valid": 0.9948740609809986, |
| "eval_loss": 0.2940564453601837, |
| "eval_num_fragments": 3.0001767565178965, |
| "eval_poi_equal": 0.7464427750773309, |
| "eval_poi_graph_edit_distance": 9.999999999999999e+63, |
| "eval_poi_graph_edit_distance_norm": 1.0, |
| "eval_poi_has_attachment_point(s)": 0.9214317277949624, |
| "eval_poi_heavy_atoms_difference": 2.363411400795404, |
| "eval_poi_heavy_atoms_difference_norm": 0.07635871742465364, |
| "eval_poi_tanimoto_similarity": 0.0, |
| "eval_poi_valid": 0.9214317277949624, |
| "eval_reassembly": 0.5125939019001325, |
| "eval_reassembly_nostereo": 0.5362792752982766, |
| "eval_runtime": 1595.0598, |
| "eval_samples_per_second": 7.094, |
| "eval_steps_per_second": 0.111, |
| "eval_tanimoto_similarity": 0.0, |
| "eval_valid": 0.9042863455589925, |
| "step": 5000 |
| } |
| ], |
| "logging_steps": 500, |
| "max_steps": 10000, |
| "num_input_tokens_seen": 0, |
| "num_train_epochs": 1, |
| "save_steps": 5000, |
| "stateful_callbacks": { |
| "TrainerControl": { |
| "args": { |
| "should_epoch_stop": false, |
| "should_evaluate": false, |
| "should_log": false, |
| "should_save": true, |
| "should_training_stop": false |
| }, |
| "attributes": {} |
| } |
| }, |
| "total_flos": 4.33139477262336e+16, |
| "train_batch_size": 128, |
| "trial_name": "trial-number=18-learning_rate=4.6e-05-warmup_ratio=0.040-min_lr=0.000-factor=0.820", |
| "trial_params": { |
| "factor": 0.8200000000000001, |
| "learning_rate": 4.606381292021688e-05, |
| "min_lr": 9.570957186046748e-10, |
| "warmup_ratio": 0.04 |
| } |
| } |
|
|