| { |
| "best_metric": 0.39628811312417145, |
| "best_model_checkpoint": "/mimer/NOBACKUP/groups/naiss2023-6-290/stefano/models//PROTAC-Splitter-EncoderDecoder-lr_reduce-opt25/trial-number=0-learning_rate=2.0e-05-warmup_ratio=0.060-min_lr=0.000-factor=0.910/checkpoint-5000", |
| "epoch": 0.49319392385085814, |
| "eval_steps": 2500, |
| "global_step": 5000, |
| "is_hyper_param_search": true, |
| "is_local_process_zero": true, |
| "is_world_process_zero": true, |
| "log_history": [ |
| { |
| "epoch": 0.049319392385085814, |
| "grad_norm": 0.9932323098182678, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 1.3472, |
| "step": 500 |
| }, |
| { |
| "epoch": 0.09863878477017163, |
| "grad_norm": 0.6675044894218445, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.3791, |
| "step": 1000 |
| }, |
| { |
| "epoch": 0.14795817715525744, |
| "grad_norm": 0.5713032484054565, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.197, |
| "step": 1500 |
| }, |
| { |
| "epoch": 0.19727756954034326, |
| "grad_norm": 0.4924110472202301, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.1224, |
| "step": 2000 |
| }, |
| { |
| "epoch": 0.24659696192542907, |
| "grad_norm": 0.38072213530540466, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.0814, |
| "step": 2500 |
| }, |
| { |
| "epoch": 0.2959163543105149, |
| "grad_norm": 0.2933690547943115, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.0578, |
| "step": 3000 |
| }, |
| { |
| "epoch": 0.3452357466956007, |
| "grad_norm": 0.24898405373096466, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.0432, |
| "step": 3500 |
| }, |
| { |
| "epoch": 0.3945551390806865, |
| "grad_norm": 0.27284932136535645, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.0338, |
| "step": 4000 |
| }, |
| { |
| "epoch": 0.4438745314657723, |
| "grad_norm": 0.24178475141525269, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.027, |
| "step": 4500 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "grad_norm": 0.2615422010421753, |
| "learning_rate": 1.9906996673933362e-05, |
| "loss": 0.0224, |
| "step": 5000 |
| }, |
| { |
| "epoch": 0.49319392385085814, |
| "eval_all_ligands_equal": 0.39628811312417145, |
| "eval_e3_equal": 0.7779054352629253, |
| "eval_e3_graph_edit_distance": 9.999999999999999e+63, |
| "eval_e3_graph_edit_distance_norm": 1.0, |
| "eval_e3_has_attachment_point(s)": 0.9931064958020327, |
| "eval_e3_heavy_atoms_difference": 0.30676093680954486, |
| "eval_e3_heavy_atoms_difference_norm": 0.002422775502318104, |
| "eval_e3_tanimoto_similarity": 0.0, |
| "eval_e3_valid": 0.9931064958020327, |
| "eval_has_all_attachment_points": 0.9843570481661511, |
| "eval_has_three_substructures": 0.9992929739284137, |
| "eval_heavy_atoms_difference": 8.062218294299603, |
| "eval_heavy_atoms_difference_norm": 0.10429584967389881, |
| "eval_linker_equal": 0.5711886875828546, |
| "eval_linker_graph_edit_distance": 9.999999999999999e+63, |
| "eval_linker_graph_edit_distance_norm": 1.0, |
| "eval_linker_has_attachment_point(s)": 0.9961997348652232, |
| "eval_linker_heavy_atoms_difference": 0.9341581970835174, |
| "eval_linker_heavy_atoms_difference_norm": 0.024806250123980716, |
| "eval_linker_tanimoto_similarity": 0.0, |
| "eval_linker_valid": 0.9961997348652232, |
| "eval_loss": 0.28600096702575684, |
| "eval_num_fragments": 2.999646486964207, |
| "eval_poi_equal": 0.70234202386213, |
| "eval_poi_graph_edit_distance": 9.999999999999999e+63, |
| "eval_poi_graph_edit_distance_norm": 1.0, |
| "eval_poi_has_attachment_point(s)": 0.9204595669465312, |
| "eval_poi_heavy_atoms_difference": 2.6359699513919574, |
| "eval_poi_heavy_atoms_difference_norm": 0.07909068566841335, |
| "eval_poi_tanimoto_similarity": 0.0, |
| "eval_poi_valid": 0.9204595669465312, |
| "eval_reassembly": 0.40247459125055235, |
| "eval_reassembly_nostereo": 0.4217410517012815, |
| "eval_runtime": 1470.3159, |
| "eval_samples_per_second": 7.696, |
| "eval_steps_per_second": 0.12, |
| "eval_tanimoto_similarity": 0.0, |
| "eval_valid": 0.9122403888643393, |
| "step": 5000 |
| } |
| ], |
| "logging_steps": 500, |
| "max_steps": 10000, |
| "num_input_tokens_seen": 0, |
| "num_train_epochs": 1, |
| "save_steps": 5000, |
| "stateful_callbacks": { |
| "TrainerControl": { |
| "args": { |
| "should_epoch_stop": false, |
| "should_evaluate": false, |
| "should_log": false, |
| "should_save": true, |
| "should_training_stop": false |
| }, |
| "attributes": {} |
| } |
| }, |
| "total_flos": 4.33139477262336e+16, |
| "train_batch_size": 128, |
| "trial_name": "trial-number=0-learning_rate=2.0e-05-warmup_ratio=0.060-min_lr=0.000-factor=0.910", |
| "trial_params": { |
| "factor": 0.91, |
| "learning_rate": 1.9906996673933362e-05, |
| "min_lr": 2.910635913133059e-09, |
| "warmup_ratio": 0.06 |
| } |
| } |
|
|