Align public training codebase with local training setup

environment.yml

@@ -11,6 +11,8 @@ dependencies:
   - pyarrow>=21.0
   - duckdb>=1.5
   - biopython>=1.85
+  - requests>=2.32
+  - tqdm>=4.67
   - pip:
       - transformers>=4.57.0
       - esm>=3.2.3