Update README.md
Browse files
README.md
CHANGED
|
@@ -19,7 +19,60 @@ We are releasing the weights for the three best-performing models:
|
|
| 19 |
|
| 20 |
## Usage
|
| 21 |
|
|
|
|
| 22 |
|
|
|
|
| 23 |
|
| 24 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 25 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
|
| 20 |
## Usage
|
| 21 |
|
| 22 |
+
Below are sample snippets for loading each model with its pretrained weights. Once loaded, you can run inference by passing your pre-processed ECG data to the model’s forward method. Please refer to the project’s GitHub repository for end-to-end examples demonstrating how to use these models.
|
| 23 |
|
| 24 |
+
### S4-ECG
|
| 25 |
|
| 26 |
+
```bash
|
| 27 |
+
import torch
|
| 28 |
+
import lightning.pytorch as pl
|
| 29 |
+
from src.lightning import S4Model
|
| 30 |
+
|
| 31 |
+
def load_from_checkpoint(pl_model, checkpoint_path):
|
| 32 |
+
""" load from checkpoint function that is compatible with S4
|
| 33 |
+
"""
|
| 34 |
+
lightning_state_dict = torch.load(checkpoint_path)
|
| 35 |
+
state_dict = lightning_state_dict["state_dict"]
|
| 36 |
+
|
| 37 |
+
for name, param in pl_model.named_parameters():
|
| 38 |
+
param.data = state_dict[name].data
|
| 39 |
+
for name, param in pl_model.named_buffers():
|
| 40 |
+
param.data = state_dict[name].data
|
| 41 |
+
|
| 42 |
+
checkpoint_path = "path/to/your/benchmark_acs_state_v0/dmaxlwcg/checkpoints/epoch=49-step=1100.ckpt"
|
| 43 |
+
|
| 44 |
+
model = S4Model(init_lr=1e-4,
|
| 45 |
+
d_input=3,
|
| 46 |
+
d_output=1)
|
| 47 |
+
|
| 48 |
+
load_from_checkpoint(model, checkpoint_path)
|
| 49 |
+
```
|
| 50 |
+
|
| 51 |
+
### ResNet-18
|
| 52 |
|
| 53 |
+
```bash
|
| 54 |
+
import torch
|
| 55 |
+
import lightning.pytorch as pl
|
| 56 |
+
from src.lightning import ResNet18_1D
|
| 57 |
+
|
| 58 |
+
checkpoint_path = "path/to/your/benchmark_acs_resnet18_1d_final_vf/2vud5fft/checkpoints/epoch=37-step=418.ckpt"
|
| 59 |
+
model = ResNet18_1D.load_from_checkpoint(checkpoint_path)
|
| 60 |
+
```
|
| 61 |
+
|
| 62 |
+
### HuBERT-ECG
|
| 63 |
+
|
| 64 |
+
```bash
|
| 65 |
+
import torch
|
| 66 |
+
from hubert_ecg import HuBERTECG, HuBERTECGConfig
|
| 67 |
+
from hubert_ecg_classification import HuBERTForECGClassification
|
| 68 |
+
|
| 69 |
+
path = "path/to/your/hubert_3_iteration_300_finetuned_simdmsnv.pt"
|
| 70 |
+
checkpoint = torch.load(path, map_location='cpu')
|
| 71 |
+
config = checkpoint['model_config']
|
| 72 |
+
hubert_ecg = HuBERTECG(config)
|
| 73 |
+
hubert_ecg = HuBERTForECGClassification(hubert_ecg)
|
| 74 |
+
hubert_ecg.load_state_dict(checkpoint['model_state_dict'])
|
| 75 |
+
```
|
| 76 |
+
|
| 77 |
+
## Citation
|
| 78 |
+
*Paper currently under review*
|