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DeepTumour

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Files changed (8) hide show
  1. deeptumour_baseline_29tumors/Mut-Type-Header.csv +151 -0
  2. deeptumour_baseline_29tumors/complete_ensemble.pt +3 -0
  3. deeptumour_baseline_29tumors/hg19.1Mb.header.gz +3 -0
  4. deeptumour_baseline_29tumors/z-norm.pkl +3 -0
  5. deeptumour_baseline_simulations_29tumors/Mut-Type-Header.csv +151 -0
  6. deeptumour_baseline_simulations_29tumors/complete_ensemble.pt +3 -0
  7. deeptumour_baseline_simulations_29tumors/hg19.1Mb.header.gz +3 -0
  8. deeptumour_baseline_simulations_29tumors/z-norm.pkl +3 -0
deeptumour_baseline_29tumors/Mut-Type-Header.csv ADDED
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+ change,tri,type
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+ A..C,A,sgl
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+ C..G,C,sgl
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+ C..T,C,sgl
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9
+ AA..AG,AA,di1
10
+ AA..AT,AA,di1
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+ AA..GA,AA,di2
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+ AA..TA,AA,di2
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+ AC..AG,AC,di1
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+ AC..AT,AC,di1
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+ AC..GC,AC,di2
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+ AC..TC,AC,di2
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+ AG..CG,AG,di2
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+ AG..GG,AG,di2
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+ AT..GT,AT,di2
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+ CA..GA,CA,di2
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+ CC..CG,CC,di1
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+ CG..AG,CG,di2
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+ CG..GG,CG,di2
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+ CG..TG,CG,di2
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+ CT..AT,CT,di2
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+ CT..GT,CT,di2
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+ CT..TT,CT,di2
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+ GA..GG,GA,di1
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+ GA..GT,GA,di1
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+ GC..GA,GC,di1
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+ GC..GG,GC,di1
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+ GC..GT,GC,di1
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+ TA..TG,TA,di1
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+ AAG..ACG,AAG,tri
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+ AAG..AGG,AAG,tri
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+ AAG..ATG,AAG,tri
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+ AAT..ACT,AAT,tri
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+ AAT..AGT,AAT,tri
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+ AAT..ATT,AAT,tri
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+ ACA..AAA,ACA,tri
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+ ACA..AGA,ACA,tri
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+ ACA..ATA,ACA,tri
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+ ACC..AAC,ACC,tri
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+ ACC..AGC,ACC,tri
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+ ACC..ATC,ACC,tri
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+ ACG..AGG,ACG,tri
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+ ACG..ATG,ACG,tri
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+ ACT..AAT,ACT,tri
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+ ACT..AGT,ACT,tri
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+ ACT..ATT,ACT,tri
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+ CAA..CCA,CAA,tri
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+ CAA..CGA,CAA,tri
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+ CAA..CTA,CAA,tri
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+ CAC..CCC,CAC,tri
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+ CAC..CGC,CAC,tri
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+ CAC..CTC,CAC,tri
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+ CAG..CCG,CAG,tri
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+ CAG..CGG,CAG,tri
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+ CAG..CTG,CAG,tri
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+ CAT..CCT,CAT,tri
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+ CAT..CGT,CAT,tri
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+ CAT..CTT,CAT,tri
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+ CCA..CAA,CCA,tri
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+ CCA..CGA,CCA,tri
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+ CCA..CTA,CCA,tri
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+ CCC..CAC,CCC,tri
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+ CCC..CGC,CCC,tri
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+ CCC..CTC,CCC,tri
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+ CCG..CAG,CCG,tri
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+ CCG..CGG,CCG,tri
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+ CCG..CTG,CCG,tri
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+ CCT..CAT,CCT,tri
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+ CCT..CGT,CCT,tri
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+ GAA..GCA,GAA,tri
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+ GAA..GGA,GAA,tri
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+ GAA..GTA,GAA,tri
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+ GAC..GCC,GAC,tri
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+ GAC..GGC,GAC,tri
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+ GAC..GTC,GAC,tri
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+ GAG..GCG,GAG,tri
111
+ GAG..GGG,GAG,tri
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+ GAG..GTG,GAG,tri
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+ GAT..GCT,GAT,tri
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+ GAT..GGT,GAT,tri
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+ GAT..GTT,GAT,tri
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+ GCA..GAA,GCA,tri
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+ GCA..GGA,GCA,tri
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+ GCA..GTA,GCA,tri
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+ GCC..GAC,GCC,tri
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+ GCC..GGC,GCC,tri
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+ GCC..GTC,GCC,tri
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+ GCG..GAG,GCG,tri
123
+ GCG..GGG,GCG,tri
124
+ GCG..GTG,GCG,tri
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+ GCT..GAT,GCT,tri
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+ GCT..GGT,GCT,tri
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+ GCT..GTT,GCT,tri
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+ TAA..TCA,TAA,tri
129
+ TAA..TGA,TAA,tri
130
+ TAA..TTA,TAA,tri
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+ TAC..TCC,TAC,tri
132
+ TAC..TGC,TAC,tri
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+ TAC..TTC,TAC,tri
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+ TAG..TCG,TAG,tri
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+ TAG..TGG,TAG,tri
136
+ TAG..TTG,TAG,tri
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+ TAT..TCT,TAT,tri
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+ TAT..TGT,TAT,tri
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+ TAT..TTT,TAT,tri
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+ TCA..TAA,TCA,tri
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+ TCA..TGA,TCA,tri
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+ TCA..TTA,TCA,tri
143
+ TCC..TAC,TCC,tri
144
+ TCC..TGC,TCC,tri
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+ TCC..TTC,TCC,tri
146
+ TCG..TAG,TCG,tri
147
+ TCG..TGG,TCG,tri
148
+ TCG..TTG,TCG,tri
149
+ TCT..TAT,TCT,tri
150
+ TCT..TGT,TCT,tri
151
+ TCT..TTT,TCT,tri
deeptumour_baseline_29tumors/complete_ensemble.pt ADDED
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+ size 38464105
deeptumour_baseline_29tumors/hg19.1Mb.header.gz ADDED
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+ size 6136
deeptumour_baseline_29tumors/z-norm.pkl ADDED
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deeptumour_baseline_simulations_29tumors/Mut-Type-Header.csv ADDED
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1
+ change,tri,type
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+ A..C,A,sgl
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+ A..G,A,sgl
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+ A..T,A,sgl
5
+ C..A,C,sgl
6
+ C..G,C,sgl
7
+ C..T,C,sgl
8
+ AA..AC,AA,di1
9
+ AA..AG,AA,di1
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+ AA..AT,AA,di1
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+ AA..CA,AA,di2
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+ AA..GA,AA,di2
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+ AA..TA,AA,di2
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+ AC..AA,AC,di1
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+ AC..AG,AC,di1
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+ AC..AT,AC,di1
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+ AC..CC,AC,di2
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+ AC..GC,AC,di2
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+ AC..TC,AC,di2
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+ AG..CG,AG,di2
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+ AG..GG,AG,di2
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+ AG..TG,AG,di2
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+ AT..CT,AT,di2
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+ AT..GT,AT,di2
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+ AT..TT,AT,di2
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+ CA..AA,CA,di2
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+ CA..CC,CA,di1
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+ CA..CG,CA,di1
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+ CA..CT,CA,di1
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+ CA..GA,CA,di2
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+ CA..TA,CA,di2
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+ CC..AC,CC,di2
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+ CC..CA,CC,di1
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+ CC..CG,CC,di1
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+ CC..CT,CC,di1
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+ CC..GC,CC,di2
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+ CC..TC,CC,di2
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+ CG..AG,CG,di2
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+ CG..GG,CG,di2
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+ CG..TG,CG,di2
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+ CT..AT,CT,di2
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+ CT..GT,CT,di2
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+ CT..TT,CT,di2
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+ GA..GC,GA,di1
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+ GA..GG,GA,di1
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+ GA..GT,GA,di1
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+ GC..GA,GC,di1
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+ GC..GG,GC,di1
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+ GC..GT,GC,di1
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+ TA..TC,TA,di1
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+ TA..TG,TA,di1
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+ TA..TT,TA,di1
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+ TC..TA,TC,di1
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+ TC..TG,TC,di1
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+ TC..TT,TC,di1
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+ AAA..ACA,AAA,tri
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+ AAA..AGA,AAA,tri
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+ AAA..ATA,AAA,tri
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+ AAC..ACC,AAC,tri
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+ AAC..AGC,AAC,tri
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+ AAC..ATC,AAC,tri
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+ AAG..ACG,AAG,tri
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+ AAG..AGG,AAG,tri
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+ AAG..ATG,AAG,tri
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+ AAT..ACT,AAT,tri
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+ AAT..AGT,AAT,tri
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+ AAT..ATT,AAT,tri
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+ ACA..AAA,ACA,tri
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+ ACA..AGA,ACA,tri
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+ ACA..ATA,ACA,tri
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+ ACC..AAC,ACC,tri
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+ ACC..AGC,ACC,tri
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+ ACC..ATC,ACC,tri
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+ ACG..AAG,ACG,tri
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+ ACG..AGG,ACG,tri
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+ ACG..ATG,ACG,tri
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+ ACT..AAT,ACT,tri
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+ ACT..AGT,ACT,tri
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+ ACT..ATT,ACT,tri
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+ CAA..CCA,CAA,tri
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+ CAA..CGA,CAA,tri
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+ CAA..CTA,CAA,tri
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+ CAC..CCC,CAC,tri
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+ CAC..CGC,CAC,tri
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+ CAC..CTC,CAC,tri
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+ CAG..CCG,CAG,tri
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+ CAG..CGG,CAG,tri
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+ CAG..CTG,CAG,tri
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+ CAT..CCT,CAT,tri
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+ CAT..CGT,CAT,tri
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+ CAT..CTT,CAT,tri
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+ CCA..CAA,CCA,tri
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+ CCA..CGA,CCA,tri
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+ CCA..CTA,CCA,tri
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+ CCC..CAC,CCC,tri
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+ CCC..CGC,CCC,tri
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+ CCC..CTC,CCC,tri
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+ CCG..CAG,CCG,tri
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+ CCG..CGG,CCG,tri
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+ CCG..CTG,CCG,tri
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+ CCT..CAT,CCT,tri
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+ CCT..CGT,CCT,tri
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+ CCT..CTT,CCT,tri
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+ GAA..GCA,GAA,tri
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+ GAA..GGA,GAA,tri
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+ GAA..GTA,GAA,tri
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+ GAC..GCC,GAC,tri
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+ GAC..GGC,GAC,tri
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+ GAC..GTC,GAC,tri
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+ GAG..GCG,GAG,tri
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+ GAG..GGG,GAG,tri
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+ GAG..GTG,GAG,tri
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+ GAT..GTT,GAT,tri
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+ GCA..GAA,GCA,tri
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+ GCA..GGA,GCA,tri
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+ TCG..TTG,TCG,tri
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+ TCT..TAT,TCT,tri
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+ TCT..TGT,TCT,tri
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deeptumour_baseline_simulations_29tumors/complete_ensemble.pt ADDED
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deeptumour_baseline_simulations_29tumors/hg19.1Mb.header.gz ADDED
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deeptumour_baseline_simulations_29tumors/z-norm.pkl ADDED
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