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README.md
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@@ -6,15 +6,36 @@ MolLM: A Unified Language Model to Integrate Biomedical Text with 2D and 3D Mole
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Model checkpoints for [MolLM model](https://github.com/gersteinlab/MolLM).
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The checkpoints for each downstream task can be found as follows:
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- `GraphTextRetrieval`
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- `GraphTextRetrieval-model.zip`
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- `MoleculeCaption`
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- `MoleculeCaption-model.zip`
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- `MoleculeEditing`
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- `MoleculeEditing-model.zip`
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- `MoleculeGeneration`
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- `MoleculeGeneration-model.zip`
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- `MoleculePrediction`
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- `MoleculePrediction-model.zip`
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Model checkpoints for [MolLM model](https://github.com/gersteinlab/MolLM).
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The checkpoints for each downstream task can be found as follows (along with a summary of the contents of the top-level of each archive):
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- `GraphTextRetrieval`
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- `GraphTextRetrieval-model.zip`
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- `bert_pretrained`
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- `all_checkpoints`
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- `data`
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- `finetune_save`
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- `MoleculeCaption`
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- `MoleculeCaption-model.zip`
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- `data`
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- `text2mol-data`
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- `M3_checkpoints`
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- `scibert`
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- `molt5-base-smiles2caption`
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- `molt5-small-smiles2caption`
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- `molt5-large-smiles2caption`
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- `MoleculeEditing`
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- `MoleculeEditing-model.zip`
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- `bert_pretrained`
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- `checkpoints`
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- `embedding_data`
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- `model-epoch=507.ckpt`
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- `MoleculeGeneration`
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- `MoleculeGeneration-model.zip`
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- `results`
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- `model-epoch=465.ckpt`
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- `qm9_64gnn_128-64lin_1-1mask_0d6noise_convlu1`
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- `MoleculePrediction`
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- `MoleculePrediction-model.zip`
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- `all_checkpoints`
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- `dataset`
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- `model-epoch=507.ckpt`
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