################################################# patho-bench #################################################
################################################# patho-bench #################################################
################################################# patho-bench #################################################

# # datasets=("BC" "BCNB" "BOEHMK" "BRACS" "CPTAC" "EBRAINS" "HANCOCK" "HERROI" "IMP" "MBC" "MUT-HET-RCC" "NADT" "NAT" "OVARIAN" "PANDA")  # 완료 15
# # datasets=("SR386" "VISIOMEL")                         # 미완료 0
datasets=("SR386")
for dataset in "${datasets[@]}"; do
    python -m exaonepath.create_patches.merge_process_lists \
      --input-dir /dsbio/pathology/patches/patho-bench/${dataset}-patches-256-based_on_x20-ver-0.3 \
      --output-dir /dsbio/pathology/patches/patho-bench/${dataset}-patches-256-based_on_x20-ver-0.3
done





################################################# closed benchmark #################################################
################################################# closed benchmark #################################################
################################################# closed benchmark #################################################
# datasets=("BMS" "SMC_ilwon" "UPMC")

# datasets=("UPMC")
# for dataset in "${datasets[@]}"; do
#     python -m exaonepath.create_patches.merge_process_lists \
#       --input-dir /dsbio/pathology/patches/closed-bench/${dataset}-patches-256-based_on_x20-ver-0.3 \
#       --output-dir /dsbio/pathology/patches/closed-bench/${dataset}-patches-256-based_on_x20-ver-0.3
# done


# # # TCGA
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/TCGA_ALL_FFPE_WSI-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/TCGA_ALL_FFPE_WSI-patches-256-based_on_x20-ver-0.3

# # # GTEx
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/GTEx_data-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/GTEx_data-patches-256-based_on_x20-ver-0.3

# # SMC
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/SMC_ilwon-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/SMC_ilwon-patches-256-based_on_x20-ver-0.3

# # CPTAC
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/CPTAC_ALL_WSI-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/CPTAC_ALL_WSI-patches-256-based_on_x20-ver-0.3

# # BMS
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/BMS-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/BMS-patches-256-based_on_x20-ver-0.3

# # BCNB
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/BCNB-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/BCNB-patches-256-based_on_x20-ver-0.3

# # UPMC_LUAD
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/UPMC_LUAD_WSI-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/UPMC_LUAD_WSI-patches-256-based_on_x20-ver-0.3

# # UPMC
# python create_patches/merge_process_lists.py \
#   --input-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/UPMC-patches-256-based_on_x20-ver-0.3 \
#   --output-dir /dsbio/js.yun/projects/dino-distillation/create_patches/results/UPMC-patches-256-based_on_x20-ver-0.3