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fc329a3 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | [project]
name = "simplexuq-code"
version = "0.1.0"
requires-python = ">=3.10,<3.14"
dependencies = [
"numpy>=1.24",
"scipy>=1.10",
"scikit-learn>=1.3",
"matplotlib>=3.7",
"pyyaml>=6.0",
]
[project.optional-dependencies]
bio = ["scanpy", "anndata", "rpy2"] # for deconvolution experiments
r = ["rpy2"] # for R integration (visualization, scRNA analysis)
dev = ["pytest", "ruff", "ipykernel"]
gpu = ["torch>=2.0", "torchvision>=0.15"] # for CIFAR softmax experiment
[tool.setuptools.packages.find]
where = ["."]
include = ["src*"]
[tool.ruff]
line-length = 100
select = ["E", "F", "I"]
[tool.pytest.ini_options]
testpaths = ["tests"]
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