abhinadduri commited on
Commit
5c66f56
·
verified ·
1 Parent(s): de92178

Add files using upload-large-folder tool

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. fewshot/hepg2/cell_type_onehot_map.pkl +3 -0
  2. fewshot/hepg2/checkpoints/best.ckpt +3 -0
  3. fewshot/hepg2/checkpoints/final.ckpt +3 -0
  4. fewshot/hepg2/eval_best.ckpt/adata_pred.h5ad +3 -0
  5. fewshot/hepg2/eval_best.ckpt/hepg2_pred_de.csv +3 -0
  6. fewshot/hepg2/eval_best.ckpt/hepg2_results.csv +3 -0
  7. fewshot/hepg2/eval_last.ckpt/adata_pred.h5ad +3 -0
  8. fewshot/hepg2/eval_last.ckpt/adata_real.h5ad +3 -0
  9. fewshot/hepg2/eval_last.ckpt/hepg2_real_de.csv +3 -0
  10. fewshot/jurkat/checkpoints/best.ckpt +3 -0
  11. fewshot/jurkat/checkpoints/last.ckpt +3 -0
  12. fewshot/jurkat/eval_best.ckpt/adata_real.h5ad +3 -0
  13. fewshot/jurkat/eval_best.ckpt/jurkat_pred_de.csv +3 -0
  14. fewshot/jurkat/eval_best.ckpt/jurkat_real_de.csv +3 -0
  15. fewshot/jurkat/eval_last.ckpt/adata_real.h5ad +3 -0
  16. fewshot/jurkat/eval_last.ckpt/jurkat_pred_de.csv +3 -0
  17. fewshot/jurkat/eval_last.ckpt/jurkat_real_de.csv +3 -0
  18. fewshot/jurkat/eval_last.ckpt/jurkat_results.csv +3 -0
  19. fewshot/jurkat/pert_onehot_map.pt +3 -0
  20. fewshot/k562/batch_onehot_map.pkl +3 -0
  21. fewshot/k562/cell_type_onehot_map.pkl +3 -0
  22. fewshot/k562/checkpoints/best.ckpt +3 -0
  23. fewshot/k562/checkpoints/last.ckpt +3 -0
  24. fewshot/k562/eval_best.ckpt/adata_pred.h5ad +3 -0
  25. fewshot/k562/eval_best.ckpt/adata_real.h5ad +3 -0
  26. fewshot/k562/eval_best.ckpt/k562_pred_de.csv +3 -0
  27. fewshot/k562/eval_best.ckpt/k562_results.csv +3 -0
  28. fewshot/k562/eval_last.ckpt/adata_real.h5ad +3 -0
  29. fewshot/k562/eval_last.ckpt/k562_pred_de.csv +3 -0
  30. fewshot/rpe1/checkpoints/last.ckpt +3 -0
  31. fewshot/rpe1/eval_best.ckpt/adata_real.h5ad +3 -0
  32. fewshot/rpe1/eval_best.ckpt/rpe1_agg_results.csv +3 -0
  33. fewshot/rpe1/eval_best.ckpt/rpe1_pred_de.csv +3 -0
  34. fewshot/rpe1/eval_best.ckpt/rpe1_results.csv +3 -0
  35. fewshot/rpe1/eval_last.ckpt/rpe1_pred_de.csv +3 -0
  36. fewshot/rpe1/eval_last.ckpt/rpe1_real_de.csv +3 -0
  37. fewshot/rpe1/eval_last.ckpt/rpe1_results.csv +3 -0
  38. fewshot/rpe1/pert_onehot_map.pt +3 -0
  39. fewshot/rpe1/var_dims.pkl +3 -0
  40. zeroshot/hepg2/cell_type_onehot_map.pkl +3 -0
  41. zeroshot/hepg2/checkpoints/best.ckpt +3 -0
  42. zeroshot/hepg2/eval_best.ckpt/adata_pred.h5ad +3 -0
  43. zeroshot/hepg2/eval_best.ckpt/hepg2_results.csv +3 -0
  44. zeroshot/hepg2/eval_last.ckpt/adata_pred.h5ad +3 -0
  45. zeroshot/hepg2/eval_last.ckpt/adata_real.h5ad +3 -0
  46. zeroshot/hepg2/eval_last.ckpt/hepg2_pred_de.csv +3 -0
  47. zeroshot/hepg2/eval_last.ckpt/hepg2_real_de.csv +3 -0
  48. zeroshot/hepg2/pert_onehot_map.pt +3 -0
  49. zeroshot/hepg2/var_dims.pkl +3 -0
  50. zeroshot/jurkat/checkpoints/final.ckpt +3 -0
fewshot/hepg2/cell_type_onehot_map.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:16db8a41a16b33237b9f0ae45cc1d97a1634b67df7ce555e7c909fbc54e0fa63
3
+ size 1799
fewshot/hepg2/checkpoints/best.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6b41fd93f46bd2d5a20e17e1d1249c666db493aa3303baf7768dbdbf36383cc3
3
+ size 510117003
fewshot/hepg2/checkpoints/final.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9e39d5c8e8176eb80bdcab958dec9dd0bbe24aef6156fc2a5319d44d14104654
3
+ size 510112715
fewshot/hepg2/eval_best.ckpt/adata_pred.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ca92602827013b963d129a63932d7318aedf3ef59ead14a250c9ec3dd9802c41
3
+ size 1154873444
fewshot/hepg2/eval_best.ckpt/hepg2_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0db6735623eeb5fe11caa6cdeaaed6983864a6e94e70f52082075b27cf22d813
3
+ size 234416729
fewshot/hepg2/eval_best.ckpt/hepg2_results.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1e4cd7df90212c61f7f171fcd5da69449e5e3edde4462201b8dedd99d07aa2c4
3
+ size 354986
fewshot/hepg2/eval_last.ckpt/adata_pred.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:765d4c57d50589ef0b0a7b81c7cd50f84b31e21c0c7a609b4e0a7b47e8e69b8b
3
+ size 1154873444
fewshot/hepg2/eval_last.ckpt/adata_real.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4ff21013d1ad55f231d2b7752064e6ff437bfb3c2f234f25df5db4ea94e2bb64
3
+ size 1154873444
fewshot/hepg2/eval_last.ckpt/hepg2_real_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3782766558cf7d2f8dcdfb160baf114116fd87d25e8caaa7343528267bc0016f
3
+ size 234027350
fewshot/jurkat/checkpoints/best.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d946ea89b2f40df7f5eef8dc9c3d1b58be9ce59b88c13df29f01f5c85dd0fa98
3
+ size 510117003
fewshot/jurkat/checkpoints/last.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:614df5dc6bf260cdc0fb29dbab65579f68764910f5bd96e51ac64ec894d2c19c
3
+ size 510117003
fewshot/jurkat/eval_best.ckpt/adata_real.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bc9bbbfa80233fc090f0d1a42e72c6518d30b83f5ccbd5139df957927499da78
3
+ size 2257688768
fewshot/jurkat/eval_best.ckpt/jurkat_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:35b970a8ac61e262914c43be0870040898fb7be1fb584da416ece1b31a049a8d
3
+ size 268770513
fewshot/jurkat/eval_best.ckpt/jurkat_real_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d6c2fcee1e35295fd8e0ffb376b5168fa2f41acfe97941da4f328a181ddfca48
3
+ size 268688957
fewshot/jurkat/eval_last.ckpt/adata_real.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bc9bbbfa80233fc090f0d1a42e72c6518d30b83f5ccbd5139df957927499da78
3
+ size 2257688768
fewshot/jurkat/eval_last.ckpt/jurkat_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8284841e2a696f4ba314be48b48f9fd1033f526f0c86fe18062cae9a22c5606f
3
+ size 268719482
fewshot/jurkat/eval_last.ckpt/jurkat_real_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d6c2fcee1e35295fd8e0ffb376b5168fa2f41acfe97941da4f328a181ddfca48
3
+ size 268688957
fewshot/jurkat/eval_last.ckpt/jurkat_results.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9159b140e14ca5aa1d3f93c648b68be104b7a9e50ce0d3eb3301e1e199f45618
3
+ size 404738
fewshot/jurkat/pert_onehot_map.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f5621cab243a5135014af3867f63f8bf75cff19aee06d0f29a1bdecd2dbf47d0
3
+ size 16746593
fewshot/k562/batch_onehot_map.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c1297b376b3b73630622a204bf646cd5a0efa3b512212e3e1f1ae03b7c255517
3
+ size 721431
fewshot/k562/cell_type_onehot_map.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:389a89d5435c2b011b17c20a1dbf11aef5c6c74dcbc9a2299cff6dd07cb851af
3
+ size 1799
fewshot/k562/checkpoints/best.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3d5d709a698a1f1a80ccf691589fdf7ebed1906c946e437422378d9afc519a02
3
+ size 510117003
fewshot/k562/checkpoints/last.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3d5d709a698a1f1a80ccf691589fdf7ebed1906c946e437422378d9afc519a02
3
+ size 510117003
fewshot/k562/eval_best.ckpt/adata_pred.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ad86186cacaa608b89448eed6d34fe64c7f2f300da0376a83471ea2bba968e96
3
+ size 2200450466
fewshot/k562/eval_best.ckpt/adata_real.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9d0b466a6925755d5b9118924adc5d8cd333717e780bb71bb52dcba6120d9230
3
+ size 2200450466
fewshot/k562/eval_best.ckpt/k562_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:82017993a5690744ddf9396bd94bb6c7bb989422e111ffeaf26755c2be543aa7
3
+ size 240532437
fewshot/k562/eval_best.ckpt/k562_results.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bcba9ae671c391e78b11efda0bb0d3d48f8052541ae7599d522b293e96e3594c
3
+ size 365675
fewshot/k562/eval_last.ckpt/adata_real.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9d0b466a6925755d5b9118924adc5d8cd333717e780bb71bb52dcba6120d9230
3
+ size 2200450466
fewshot/k562/eval_last.ckpt/k562_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:82017993a5690744ddf9396bd94bb6c7bb989422e111ffeaf26755c2be543aa7
3
+ size 240532437
fewshot/rpe1/checkpoints/last.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:aa41c5b7ce8108d7c02703ded65684cf9cc1599f26f7ce23e9764ecc4e0262ea
3
+ size 510117003
fewshot/rpe1/eval_best.ckpt/adata_real.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:abf97bfbecbdd49c344c0f5ac0a198c6d97d4e8d5f109c0ef852b6c2e04e6462
3
+ size 2126093976
fewshot/rpe1/eval_best.ckpt/rpe1_agg_results.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:44ca58f41d9f814d2fd643407d8f52f9a1d7e23da9ed656cab4811fac73c0cc7
3
+ size 3592
fewshot/rpe1/eval_best.ckpt/rpe1_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d57edb929995547de51ce4d4b7db70533fd57a4741901ae6553caf1db98ac703
3
+ size 264280216
fewshot/rpe1/eval_best.ckpt/rpe1_results.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:36b6afce7889485a2afa99a13449b59dbd06d14d564e985a37629f93101ffd34
3
+ size 411935
fewshot/rpe1/eval_last.ckpt/rpe1_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:67bb64988bcd3602658c103f7c8552c70720e34ec7c07cd3ab96bcf8705c70f6
3
+ size 264146750
fewshot/rpe1/eval_last.ckpt/rpe1_real_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d1cb9238ab01d63f76008a72e1a0ee8cb6b2290cac5f3d216b74cc6e5695c4a9
3
+ size 264204574
fewshot/rpe1/eval_last.ckpt/rpe1_results.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:af8c58308a8979b332c8fb1ce6e86226abfd8c4a74661b1669c4303478865774
3
+ size 409969
fewshot/rpe1/pert_onehot_map.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f5621cab243a5135014af3867f63f8bf75cff19aee06d0f29a1bdecd2dbf47d0
3
+ size 16746593
fewshot/rpe1/var_dims.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f7446d88ec457cf174b0bb97384c49b7b0f8254a94b7aaf61c0275289cbf63f9
3
+ size 155642
zeroshot/hepg2/cell_type_onehot_map.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:18d2aa8ddc6c74bd818f8f318d7c7dd31032852a35ebae5f207f07c8e8418113
3
+ size 1799
zeroshot/hepg2/checkpoints/best.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c6f4903cd44be6c10161befc3ade42fd63596552c5f7d7378736830446bb9d5b
3
+ size 510117003
zeroshot/hepg2/eval_best.ckpt/adata_pred.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d75831879a145cf4ae8b1086c53103486f207b96473b50c00af1f2c60a3f2314
3
+ size 1577727376
zeroshot/hepg2/eval_best.ckpt/hepg2_results.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9b7b329faa11cfdfbbac37ad571bdf47e8af7f988d61561eab51d80dce9d643a
3
+ size 509894
zeroshot/hepg2/eval_last.ckpt/adata_pred.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ff7342d7e2c421c37df0cf889962f92d168badd7edff6a5876d916ca0d12b765
3
+ size 1577727376
zeroshot/hepg2/eval_last.ckpt/adata_real.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:75f79feff37c4334559ea88c1e2a27acd306eb7dee5a2e25f37c4860014ca2b9
3
+ size 1577727376
zeroshot/hepg2/eval_last.ckpt/hepg2_pred_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f7daeb19b3595e5045819bd37261497303393e658f755c65d2406da6366d1dbb
3
+ size 332003883
zeroshot/hepg2/eval_last.ckpt/hepg2_real_de.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c0a9582aeec67230424e4d95fd26f5c2a6d9e841c13f804d46de1b74aaeddff7
3
+ size 331857105
zeroshot/hepg2/pert_onehot_map.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f5621cab243a5135014af3867f63f8bf75cff19aee06d0f29a1bdecd2dbf47d0
3
+ size 16746593
zeroshot/hepg2/var_dims.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f7446d88ec457cf174b0bb97384c49b7b0f8254a94b7aaf61c0275289cbf63f9
3
+ size 155642
zeroshot/jurkat/checkpoints/final.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8f081abe48ccfe7653a3d0d4806d249bf821279b5b7b0fc22eb1d5a0943cae26
3
+ size 510112715