T-REN / task_utils.py
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import os
import math
import itertools
import numpy as np
import torch
import torch.nn.functional as F
import torchvision.transforms as T
from matplotlib import pyplot as plt
from sklearn.decomposition import PCA
class CenterPadding(torch.nn.Module):
def __init__(self, multiple):
super().__init__()
self.multiple = multiple
def _get_pad(self, size):
new_size = math.ceil(size / self.multiple) * self.multiple
pad_size = new_size - size
pad_size_left = pad_size // 2
pad_size_right = pad_size - pad_size_left
return pad_size_left, pad_size_right
@torch.inference_mode()
def forward(self, x):
pads = list(itertools.chain.from_iterable(self._get_pad(m) for m in x.shape[:1:-1]))
output = F.pad(x, pads)
return output
def upsample_features(image_features, new_h, new_w, padded_h, padded_w, upsampling_method='bilinear'):
if upsampling_method == 'bilinear':
upsampled_feature = torch.nn.functional.interpolate(image_features,
size=[padded_h, padded_w], mode='bilinear')
upsampled_feature = T.CenterCrop((new_h, new_w))(upsampled_feature)
else:
raise ValueError(f'{upsampling_method} is not a valid upsampling method.')
return upsampled_feature
def visualize_features(features, image, save_path):
image_height, image_width = image.shape[1], image.shape[2]
pca = PCA(n_components=3)
reshaped_features = features.permute(1, 2, 0).reshape(image_height * image_width, -1).float().numpy()
pca.fit(reshaped_features)
pca_features = pca.transform(reshaped_features)
pca_features = (pca_features - pca_features.min(axis = -1)[..., None]) / \
(pca_features.max(axis = -1)[..., None] - pca_features.min(axis = -1)[..., None])
vis_features = pca_features.reshape(image_height, image_width, 3)
plt.figure()
plt.subplot(1, 2, 1)
plt.imshow(image.permute(1, 2, 0).numpy())
plt.axis('off')
plt.subplot(1, 2, 2)
plt.imshow(vis_features)
plt.axis('off')
plt.savefig(save_path)
plt.clf()
def visualize_cosine_similarity(features, images, save_dir, grid_size=64):
os.makedirs(save_dir, exist_ok=True)
features = F.normalize(features, p=2, dim=1).flatten(-2)
batch_size, _, num_tokens = features.shape
for batch_idx in range(batch_size):
similarity_map = features[batch_idx].t().mm(features[batch_idx])
for token_idx in range(num_tokens):
token_similarity_map = similarity_map[token_idx]
token_similarity_map = token_similarity_map.reshape(grid_size, grid_size)
row = token_idx // grid_size
col = token_idx % grid_size
plt.figure()
plt.subplot(1, 2, 1)
plt.imshow(images[batch_idx].cpu().permute(1, 2, 0).float().numpy())
plt.axis('off')
plt.subplot(1, 2, 2)
plt.imshow(token_similarity_map.float().detach().cpu().numpy())
plt.plot(col, row, 'rx', markersize=3, markeredgewidth=2, label='Query token')
plt.axis('off')
os.makedirs(f'{save_dir}/batch-{batch_idx}', exist_ok=True)
plt.savefig(f'{save_dir}/batch-{batch_idx}/token-{token_idx}.jpg')
plt.clf()
plt.close()
def visualize_regions(regions, image, save_dir):
os.makedirs(save_dir, exist_ok=True)
for idx, mask in enumerate(regions):
plt.imshow(mask[:, :, None] * image.permute(1, 2, 0).numpy())
plt.axis('off')
plt.savefig(os.path.join(save_dir, f'{idx}.jpg'))
plt.clf()
plt.imshow(image.permute(1, 2, 0).numpy())
plt.axis('off')
plt.savefig(os.path.join(save_dir, 'image.jpg'))
plt.clf()
def visualize_attn_weights(attn_weights, images, patch_size, grid_points=None, attn_aggregation='max', save_dir='attn_vis'):
batch_size, num_heads, num_q, _ = attn_weights.shape
h, w = images.shape[-2:]
for batch_idx in range(images.shape[0]):
batch_dir = f'{save_dir}/batch-{batch_idx}'
os.makedirs(batch_dir, exist_ok=True)
plt.imshow(images[batch_idx].permute(1, 2, 0).detach().cpu().numpy())
plt.axis('off')
plt.savefig(f'{batch_dir}/image.jpg')
plt.clf()
attn_weights = attn_weights.view(batch_size, num_heads, num_q, h // patch_size, w // patch_size)
for q_idx in range(num_q):
attn_map = F.sigmoid(attn_weights[batch_idx, :, q_idx]).detach().cpu().numpy()
if attn_aggregation == 'max':
combined_attn_map = np.max(attn_map, axis=0)
elif attn_aggregation == 'mean':
combined_attn_map = np.mean(attn_map, axis=0)
plt.imshow(combined_attn_map)
plt.axis('off')
if grid_points is not None:
plt.scatter([grid_points[batch_idx][q_idx][1] / patch_size], [grid_points[batch_idx][q_idx][0] / patch_size],
marker='o', s=20, c='red')
plt.savefig(f'{batch_dir}/query-{q_idx}.jpg')
plt.close()
def pad_or_truncate_tokens(tokens, pad_length, pad_value):
current_length, dim_size = tokens.shape
if current_length > pad_length:
return tokens[:pad_length]
if current_length < pad_length:
padding = torch.full((pad_length - current_length, dim_size), pad_value,
dtype=tokens.dtype, device=tokens.device)
return torch.cat([tokens, padding], dim=0)
def print_log(log_str, save_dir=None):
print(log_str)
if save_dir is not None:
log_file = os.path.join(save_dir, 'log.txt')
with open(log_file, 'a') as f:
f.write(log_str + '\n')