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import os
import re
from abc import ABC, abstractmethod
from typing import List
import h5py
import numpy as np
from filelock import FileLock
from .config import AutoParallelConfig, CostModel
from .tensor_parallel.shape_consistency import ShapeConsistencyManager
class ProfileDB(ABC):
"""A database that stores profiling results for multiple device mesh
shapes."""
@abstractmethod
def query(self, cluster_key, data_key):
...
@abstractmethod
def update(self, cluster_key, data_key, mesh_result):
...
def close(self):
pass
class MemDB(ProfileDB):
def __init__(self):
self.data = {}
def query(self, cluster_key, data_key):
key = (cluster_key, data_key)
mesh_result = self.data.get(key, None)
if mesh_result is None:
return None
else:
return mesh_result[0]
def update(self, cluster_key, data_key, mesh_result):
key = (cluster_key, data_key)
self.data[key] = mesh_result
class Hdf5DB(ProfileDB):
def __init__(self, name):
self.name = name
lock_name = self.name + ".lock"
self.lock = FileLock(lock_name, thread_local=False)
def query(self, cluster_key, data_key):
file_name = f"{self.name}.hdf5"
key = str((cluster_key, data_key))
self.lock.acquire()
mesh_result = None
with h5py.File(file_name, 'a') as f:
if key in f:
self.lock.release()
mesh_result = f[key]
return mesh_result[0]
else:
return None
def update(self, cluster_key, data_key, mesh_result):
key = str((cluster_key, data_key))
file_name = f"{self.name}.hdf5"
with h5py.File(file_name, 'a') as f:
f[key] = mesh_result
def close(self):
self.lock.release(force=True)
class LogicalDeviceMesh(object):
def __init__(self,
phy_mesh_shape,
mesh_shape,
phy_ids,
config: AutoParallelConfig,
alpha,
beta,
sharp,
prof_database=None,
shape_consistency_manager=None,
host_ips=None):
self.phy_mesh_shape = phy_mesh_shape
self.mesh_shape = mesh_shape
self.phy_ids = phy_ids
self.host_ips = host_ips
self.cluster_key = config.cluster_key + '_mesh_shape{}'.format('_'.join(
[str(i) for i in mesh_shape]))
self.prof_min_max_size = [1, 2**34]
self.prof_comm_dtypes = [
"int8", "uint8", "int32", "uint32", "int64", "uint64", "float16",
"float32", "float64", "bfloat16"
]
self.devices_group = {
(0, ): [self.phy_ids.transpose(), self.mesh_shape[1] - 1],
(1, ): [self.phy_ids, self.mesh_shape[1]],
(0, 1): [self.phy_ids.reshape([1, self.phy_ids.size]), 0]
}
self.prof_database = prof_database
self.shape_consistency_manager = shape_consistency_manager
self.config = config
self.cluster_info = config.get_cluster_info()
self.hw_alpha = alpha
self.hw_beta = beta
self.hw_sharp = sharp
self.algo_alpha_beta = self._estimate_algo_alpha_beta()
self.comm_op_to_nccl_test_func_name = {
'all_reduce': 'all_reduce_perf_mpi',
'all_gather': 'all_gather_perf_mpi',
'all_to_all': 'alltoall_perf_mpi',
'reduce_scatter': 'reduce_scatter_perf_mpi',
'split': 'split',
}
@property
def size(self) -> int:
return self.phy_ids.size
def _estimate_algo_alpha_beta(self):
ret = {}
ar_alpha, ar_beta = {}, {}
ag_alpha, ag_beta = {}, {}
rs_alpha, rs_beta = {}, {}
a2a_alpha, a2a_beta = {}, {}
phy_num_hosts, phy_num_devices_per_host = self.phy_mesh_shape
if phy_num_hosts == 1 or phy_num_devices_per_host == 1:
for dims in [(0, ), (1, ), (0, 1), (1, 0)]:
num_devices = 1
for dim in dims:
num_devices = self.mesh_shape[dim] * num_devices
if num_devices != 1:
ar_alpha[dims] = self.hw_alpha[0] if self.hw_sharp[
0] else self.hw_alpha[0] * num_devices / 2 / (
num_devices - 1)
ar_beta[dims] = self.hw_beta[0]
ag_alpha[dims] = self.hw_alpha[0] * num_devices / (
num_devices - 1)
ag_beta[dims] = self.hw_beta[0]
rs_alpha[dims] = self.hw_alpha[0] * num_devices / (
num_devices - 1)
rs_beta[dims] = self.hw_beta[0]
a2a_alpha[dims] = self.hw_alpha[0] * num_devices / (
num_devices - 1)
a2a_beta[dims] = self.hw_beta[0]
# phy and logical have the same mesh shape if num_hosts > 1 and num_devices_per_host > 1
else:
for dims in [(0, ), (1, ), (0, 1), (1, 0)]:
num_devices = 1
for dim in dims:
num_devices = self.mesh_shape[dim] * num_devices
if num_devices != 1:
if len(dims) == 1:
dim = dims[0]
ar_alpha[dims] = self.hw_alpha[dim] if self.hw_sharp[
dim] else self.hw_alpha[dim] * num_devices / 2 / (
num_devices - 1)
ar_beta[dims] = self.hw_beta[dim]
ag_alpha[dims] = self.hw_alpha[dim] * num_devices / (
num_devices - 1)
ag_beta[dims] = self.hw_beta[dim]
rs_alpha[dims] = self.hw_alpha[dim] * num_devices / (
num_devices - 1)
rs_beta[dims] = self.hw_beta[dim]
a2a_alpha[dims] = self.hw_alpha[dim] * num_devices / (
num_devices - 1)
a2a_beta[dims] = self.hw_beta[dim]
elif len(dims) == 2: # two level communication
num_hosts, num_devices_per_host = phy_num_hosts, phy_num_devices_per_host
inter_node_col_alpha = self.hw_alpha[
0] * num_devices_per_host
inter_node_ar_alpha = inter_node_col_alpha if self.hw_sharp[
0] else inter_node_col_alpha * num_hosts / 2 / (
num_hosts - 1)
intra_node_ar_alpha = self.hw_alpha[1]
intra_node_ar_alpha = intra_node_ar_alpha if self.hw_sharp[
1] else intra_node_ar_alpha * num_devices_per_host / 2 / (
num_devices_per_host - 1)
ar_alpha[dims] = min(inter_node_ar_alpha,
intra_node_ar_alpha)
ar_beta[dims] = max(self.hw_beta)
ag_alpha[dims] = min(
inter_node_col_alpha * num_hosts / (num_hosts - 1),
self.hw_alpha[1] * num_devices_per_host /
(num_devices_per_host - 1))
ag_beta[dims] = max(self.hw_beta)
rs_alpha[dims] = ag_alpha[dims]
rs_beta[dims] = ag_beta[dims]
a2a_alpha[dims] = min(
num_hosts * self.hw_alpha[0] / (num_hosts - 1),
self.hw_alpha[1] * num_hosts)
a2a_beta[dims] = max(self.hw_beta)
else:
pass
ret['all_to_all'] = [a2a_alpha, a2a_beta]
ret['all_reduce'] = [ar_alpha, ar_beta]
ret['all_gather'] = [ag_alpha, ag_beta]
ret['reduce_scatter'] = [rs_alpha, rs_beta]
ret['p2p_cross_device'] = [
self.cluster_info.intra_node_bw_per_device,
self.cluster_info.intra_node_latency
]
ret['p2p_cross_host'] = [
self.cluster_info.inter_node_bw_per_device,
self.cluster_info.inter_node_latency
]
return ret
#[ToDo][KDuan] stub functions here
def _profile_split(self, min_max_comm_size):
comm_size, elapsed_time = [], []
size = min_max_comm_size[0]
while size <= min_max_comm_size[1]:
time = size * 2 / self.cluster_info.memory_bw
comm_size.append(size)
elapsed_time.append(time)
size = size * 2
return np.array([comm_size, elapsed_time])
def _prase_nccl_test_results(self, f_nccl_test_out_log):
'''[ToDo][KDuan] There is some dtye that may not been supported by nccl test, using default dtype (float)'''
start_parse = False
comm_size, elapsed_time = [], []
try:
with open(f_nccl_test_out_log, 'r') as lines:
for line in lines:
if start_parse:
prof_data = re.split(r"[ ]+", line.strip())
if len(prof_data) != 13:
continue
comm_size.append(float(prof_data[0]))
elapsed_time.append(float(prof_data[5]))
if 'GB/s' in line and 'us' in line:
start_parse = True
except Exception:
print(f'failed to parse {f_nccl_test_out_log}')
return comm_size, elapsed_time
def _profile_with_nccl_test(self, min_max_comm_size, dtype, device_group,
func_name, step, workload_key):
if func_name == 'split':
if 2 == step:
return self._profile_split(min_max_comm_size)
else:
return None
workspace_dir = self.config['profiling_workspace'] + f'/{workload_key}'
os.makedirs(workspace_dir, exist_ok=True)
outfile, errfile = workspace_dir + '/profile.out', workspace_dir + '/profile.err'
if 1 == step:
num_nodes = len(self.host_ips)
num_gpus = self.mesh_shape[0] * self.mesh_shape[1]
ntasks_per_node = num_gpus // num_nodes
nccl_test_command = '"export NCCL_TESTS_SPLIT_MASK={} && export NCCL_COLLNET_ENABLE=1 && {} -b {} -e {} -g 1 -d {} -f {}"'.format(
device_group[1], func_name, min_max_comm_size[0],
min_max_comm_size[1], dtype, 2)
sbatch_command = '#!/bin/bash\n'
sbatch_command += '#SBATCH -p {}\n'.format(self.config['partition'])
sbatch_command += '#SBATCH -A {}\n'.format(self.config['account'])
sbatch_command += '#SBATCH -J {}\n'.format(self.config['jobname'])
sbatch_command += '#SBATCH -N {}\n'.format(num_nodes)
sbatch_command += '#SBATCH -t {}\n'.format(self.config['time'])
sbatch_command += '#SBATCH --ntasks-per-node={}\n'.format(
ntasks_per_node)
sbatch_command += '#SBATCH --exclusive\n'
sbatch_command += '#SBATCH --mem=0\n'
sbatch_command += '#SBATCH --network=sharp\n'
sbatch_command += '#SBATCH --mail-type=FAIL\n'
srun_command = 'srun --nodes={} --mpi=pmix --ntasks-per-node={} --network=sharp -o {} -e {} --container-image={} bash -c '.format(
num_nodes, ntasks_per_node, outfile, errfile,
self.config['container'])
command = sbatch_command + srun_command + nccl_test_command
with open(workspace_dir + '/workload.sub', 'w') as f:
f.write(command)
with open('./preprofiling_step1.sh', 'a') as f:
f.write(f'sbatch {workspace_dir}/workload.sub\n')
return None
else:
comm_size, elapsed_time = self._prase_nccl_test_results(outfile)
if len(comm_size) < 2:
assert 0, 'the profiling for {} was failed at step1, please try again'.format(
workload_key)
else:
print(workload_key, comm_size, elapsed_time)
return np.array([comm_size, elapsed_time])
def _profile_single_comm_perf(self, device_group, comm_op, step, data_key):
results = {}
func_name = self.comm_op_to_nccl_test_func_name[comm_op]
for dtype in self.prof_comm_dtypes:
size_time = self._profile_with_nccl_test(
self.prof_min_max_size, dtype, device_group, func_name, step,
data_key + f'_dtype{dtype}')
results[dtype] = size_time
return results
def profile_all_comms_perf(self, step):
if self.mesh_shape == (1, 1):
return None
mesh_results = self.prof_database.query(self.cluster_key,
self.mesh_shape)
if mesh_results:
return mesh_results
mesh_results = {}
data_key = self.cluster_key + f'_mesh_shape{self.mesh_shape[0]}x{self.mesh_shape[1]}'
for comm_op in [
'all_reduce', 'all_to_all', 'all_gather', 'reduce_scatter',
'split'
]:
comm_perf = {}
for dim, device_group in self.devices_group.items():
# don't need to profile for mesh dim == 1
if len(dim) == 1 and self.mesh_shape[dim[0]] == 1:
continue
comm_perf[dim] = self._profile_single_comm_perf(
device_group, comm_op, step, data_key +
'_comm_op{}_dim{}'.format(comm_op, ''.join(map(str, dim))))
mesh_results[comm_op] = comm_perf
if 2 == step:
self.prof_database.update(self.cluster_key, self.mesh_shape,
mesh_results)
return mesh_results
def _model_comm_cost_from_s_curve(self, size_time_array, realsize):
assert size_time_array[0][0] <= realsize <= size_time_array[0][-1],\
'the comm_size: {} is not in the profile range: [{}{}]'\
.format(realsize, size_time_array[0][0], size_time_array[0][-1])
return np.interp(realsize, size_time_array[0], size_time_array[1])
def _model_comm_cost_from_alpha_beta(self, comm_op, dim_key, size_in_bytes):
elapsed_time = 0.0
if 'split' == comm_op:
elapsed_time = size_in_bytes * 2 / (
self.cluster_info.memory_bw *
self.cluster_info.memory_efficiency) * 1e-3
else:
dict_alpha, dict_beta = self.algo_alpha_beta[comm_op]
alpha, beta = dict_alpha[dim_key], dict_beta[dim_key]
elapsed_time = (size_in_bytes /
(alpha * self.cluster_info.communication_efficiency)
* 1e-3) + beta
return elapsed_time
def _input_size_to_comm_size(self, comm_op, dims, input_size):
ret = input_size
if 'all_gather' == comm_op:
for dim in dims:
ret = ret * self.mesh_shape[dim]
return ret
def estimate_comm_cost(self, comm_op, dim, input_size, dtype):
size = self._input_size_to_comm_size(comm_op, dim, input_size)
if self.config.comm_cost_model == CostModel.S_CURVE:
mesh_perf = self.prof_database.query(self.cluster_key,
self.mesh_shape)
assert mesh_perf is not None, 'the mesh is not profiled, mesh_shape = {}'.format(
self.mesh_shape)
comm_op_perf = mesh_perf.get(comm_op, None)
assert comm_op_perf is not None, '{} is not profiled'.format(
comm_op)
elapsed_time = self._model_comm_cost_from_s_curve(
comm_op_perf[tuple(dim)][dtype], size)
return elapsed_time
elif self.config.comm_cost_model == CostModel.ALPHA_BETA:
elapsed_time = self._model_comm_cost_from_alpha_beta(
comm_op, tuple(dim), size)
elif self.config.comm_cost_model == CostModel.PROFILE:
assert False, 'Unsupported profile based communication cost model now'
elif self.config.comm_cost_model == CostModel.ZERO:
elapsed_time = 0.0
return elapsed_time # us
class PhysicalDeviceMesh(object):
def __init__(self,
phy_devices_id,
config: AutoParallelConfig,
prof_database=None,
shape_consistency_manager=None,
host_ips=None):
self.phy_devices_id = np.array(phy_devices_id)
self.num_hosts, self.num_devices_per_host = self.phy_devices_id.shape
self.host_ips = host_ips
if host_ips is None:
self.host_ips = [''] * self.num_hosts
self.config = config
self.cluster_info = config.get_cluster_info()
self.prof_database: ProfileDB = prof_database
self.shape_consistency_manager = shape_consistency_manager
if self.config.comm_cost_model not in CostModel:
raise ValueError(
f'unsupported communication cost model: {self.config.comm_cost_model}'
)
if self.config.sharding_cost_model not in CostModel:
raise ValueError(
f'unsupported sharding cost model: {self.config.sharding_cost_model}'
)
if self.config.comm_cost_model == CostModel.S_CURVE or self.config.sharding_cost_model == CostModel.PROFILE:
if self.prof_database is None:
profile_cache = config.profile_cache
if profile_cache is None:
self.prof_database = MemDB()
else:
self.prof_database = Hdf5DB(profile_cache)
elif self.config.comm_cost_model == CostModel.ALPHA_BETA:
assert self.cluster_info.intra_node_bw_per_device > 0, 'intra_node_bw_per_device is needed for alpha_beta method'
assert self.cluster_info.inter_node_bw_per_device > 0, 'inter_node_bw_per_device is needed for alpha_beta method'
if self.config.sharding_cost_model == CostModel.ALPHA_BETA:
assert self.cluster_info.memory_bw > 0, 'memory_bw is needed for alpha_beta method'
if not shape_consistency_manager:
self.shape_consistency_manager = ShapeConsistencyManager()
@property
def size(self) -> int:
return self.phy_devices_id.size
def close(self):
if self.prof_database is not None:
self.prof_database.close()
def split_pipeline_meshes(
self, num_stages,
num_devices_per_stage) -> List["PhysicalDeviceMesh"]:
sub_meshes = []
if num_devices_per_stage <= self.num_devices_per_host:
assert self.num_devices_per_host % num_devices_per_stage == 0, \
"num_devices_per_host ({}) % num_devices_per_stage ({}) != 0"\
.format(self.num_devices_per_host, num_devices_per_stage)
num_clusters_per_host = self.num_devices_per_host // num_devices_per_stage
num_clusters = self.num_hosts * num_clusters_per_host
assert num_stages % num_clusters == 0, \
"num_stages({}) % num_clusters({}) !=0".format(num_stages, num_clusters)
for mesh_id in range(num_stages):
cluster_id = mesh_id % num_clusters
cluster_col = cluster_id % num_clusters_per_host
cluster_row = cluster_id // num_clusters_per_host
sub_devices_id = [
self.phy_devices_id[cluster_row][cluster_col *
num_devices_per_stage:(
(cluster_col + 1) *
num_devices_per_stage)]
]
sub_meshes.append(
PhysicalDeviceMesh(sub_devices_id, self.config,
self.prof_database,
self.shape_consistency_manager,
[self.host_ips[cluster_row]]))
else:
assert num_devices_per_stage % self.num_devices_per_host == 0, \
"num_devices_per_stage ({}) % num_devices_per_host ({}) != 0"\
.format(num_devices_per_stage, self.num_devices_per_host)
num_host_per_cluster = num_devices_per_stage // self.num_devices_per_host
assert self.num_hosts % num_host_per_cluster == 0, \
"num_hosts ({}) % num_host_per_cluster({}) != 0".format(self.num_hosts, num_host_per_cluster)
num_clusters = self.num_hosts // num_host_per_cluster
for mesh_id in range(num_stages):
cluster_id = mesh_id % num_clusters
cluster_row = cluster_id * num_host_per_cluster
sub_devices_id = self.phy_devices_id[cluster_row:(
cluster_row + num_host_per_cluster)]
host_ips = self.host_ips[cluster_row:(cluster_row +
num_host_per_cluster)]
sub_meshes.append(
PhysicalDeviceMesh(sub_devices_id, self.config,
self.prof_database,
self.shape_consistency_manager,
host_ips))
return sub_meshes
def _profile_logical_meshes(self, logical_meshes, step):
for lmesh in logical_meshes:
lmesh.profile_all_comms_perf(step)
def as_logical_mesh(self) -> LogicalDeviceMesh:
alpha = [
self.cluster_info.inter_node_bw_per_device,
self.cluster_info.intra_node_bw_per_device
]
beta = [
self.cluster_info.inter_node_latency,
self.cluster_info.intra_node_latency
]
sharp = [
self.cluster_info.inter_node_sharp,
self.cluster_info.intra_node_sharp
]
return LogicalDeviceMesh(
self.phy_devices_id.shape,
self.phy_devices_id.shape,
self.phy_devices_id,
self.config,
alpha,
beta,
sharp,
self.prof_database,
self.shape_consistency_manager,
self.host_ips,
)
def get_logical_meshes(self):
logical_meshes = []
# (1, 2) -> (1, 2)
# (1, 4) -> (2, 2)
# (1, 8) -> (2, 4)
# (1, 16) -> (2, 8), (4, 4)
# (1, 32) -> (2, 16), (4, 8)
# (1, 48) -> (2, 24), (3, 16), (4, 12), (6, 8)
# (1, 64) -> (2, 32), (4, 16), (8, 8)
# we will traverse logical shape's axis in sharding spec, thus (2, 8) contains (8, 2)
# we will merge logical shapes' axis, thus (2, 8) contains (1, 16) and (16, 1)
if self.num_hosts == 1:
alpha = [self.cluster_info.intra_node_bw_per_device]
beta = [self.cluster_info.intra_node_latency]
sharp = [self.cluster_info.intra_node_sharp]
for i in range(2, self.num_devices_per_host):
if self.num_devices_per_host % i == 0 and i * i <= self.num_devices_per_host:
lmesh_shape = (i, self.num_devices_per_host // i)
lmesh_phy_ids = self.phy_devices_id.reshape(lmesh_shape)
logical_meshes.append(
LogicalDeviceMesh(self.phy_devices_id.shape,
lmesh_shape, lmesh_phy_ids,
self.config, alpha, beta, sharp,
self.prof_database,
self.shape_consistency_manager,
self.host_ips))
# (8, 1) -> (2, 4)
# (16, 1) -> (2, 8), (4, 4)
elif self.num_devices_per_host == 1:
alpha = [self.cluster_info.inter_node_bw_per_device]
beta = [self.cluster_info.inter_node_latency]
sharp = [self.cluster_info.inter_node_sharp]
for i in range(2, self.num_hosts):
if self.num_hosts % i == 0 and i * i <= self.num_hosts:
lmesh_shape = (i, self.num_hosts // i)
lmesh_phy_ids = self.phy_devices_id.reshape(lmesh_shape)
logical_meshes.append(
LogicalDeviceMesh(self.phy_devices_id.shape,
lmesh_phy_ids, self.config, alpha,
beta, sharp, self.prof_database,
self.shape_consistency_manager,
self.host_ips))
# (2, 1) -> (2, 1)
# (2, 8) -> (2, 8)
# (1, 2) -> (1, 2)
# (1, 3) -> (1, 3)
# (1, 5) -> (1, 5)
if 0 == len(logical_meshes):
logical_meshes.append(self.as_logical_mesh())
return logical_meshes
'''
we assume we can evenly split the pipeline and deviceMesh
'''
def _list_all_sub_meshes(self):
sub_meshes = []
for num_devices_per_stage in range(1, self.num_devices_per_host + 1):
if self.num_devices_per_host % num_devices_per_stage == 0:
num_stages = self.num_hosts * self.num_devices_per_host // num_devices_per_stage
sub_meshes.append(
self.split_pipeline_meshes(num_stages,
num_devices_per_stage)[0])
for num_hosts_per_stage in range(2, self.num_hosts + 1):
if self.num_hosts % num_hosts_per_stage == 0:
num_stages = self.num_hosts // num_hosts_per_stage
sub_meshes.append(
self.split_pipeline_meshes(
num_stages,
num_hosts_per_stage * self.num_devices_per_host)[0])
return sub_meshes
def list_all_pipeline_configs(self):
configs = []
for num_devices_per_stage in range(1, self.num_devices_per_host + 1):
if self.num_devices_per_host % num_devices_per_stage == 0:
num_stages = self.num_hosts * self.num_devices_per_host // num_devices_per_stage
configs.append((num_stages, num_devices_per_stage))
for num_hosts_per_stage in range(2, self.num_hosts + 1):
if self.num_hosts % num_hosts_per_stage == 0:
num_stages = self.num_hosts // num_hosts_per_stage
configs.append(
(num_stages,
num_hosts_per_stage * self.num_devices_per_host))
return configs
def profile_s_curve(self, step):
sub_phy_device_meshes = self._list_all_sub_meshes()
for phy_mesh in sub_phy_device_meshes:
lmeshes = phy_mesh.get_logical_meshes()
self._profile_logical_meshes(lmeshes, step)
if 2 == step:
self.save_profile_database()
def profile_alpha_beta(self):
alpha = [250, 25]
beta = [100, 100]
return alpha, beta
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