Upload README.md with huggingface_hub
Browse files
README.md
ADDED
|
@@ -0,0 +1,70 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: mit
|
| 3 |
+
tags:
|
| 4 |
+
- pytorch
|
| 5 |
+
- diffusers
|
| 6 |
+
- stable-diffusion
|
| 7 |
+
- latent-diffusion
|
| 8 |
+
- medical-imaging
|
| 9 |
+
- brain-mri
|
| 10 |
+
- multiple-sclerosis
|
| 11 |
+
- dataset-conditioning
|
| 12 |
+
---
|
| 13 |
+
|
| 14 |
+
# Brain MRI Synthesis with Stable Diffusion (fine-tuned with dataset prompts)
|
| 15 |
+
|
| 16 |
+
This model is a **fine-tuned version of Stable Diffusion v1-4** for **prompt-conditioned synthesis of brain MRI FLAIR slices**. It leverages **latent diffusion** and dataset-specific prompts to generate realistic 256x256 FLAIR scans with control over the source dataset's style or distribution.
|
| 17 |
+
|
| 18 |
+
## 🔍 Prompt Conditioning
|
| 19 |
+
|
| 20 |
+
The model introduces three special prompt tokens corresponding to the dataset of origin. During training, each image was paired with a prompt indicating its source:
|
| 21 |
+
|
| 22 |
+
- `"SHIFTS FLAIR MRI"`
|
| 23 |
+
- `"VH FLAIR MRI"`
|
| 24 |
+
- `"WMH2017 FLAIR MRI"`
|
| 25 |
+
|
| 26 |
+
These prompts were added as special tokens to the tokenizer, and their embeddings were fine-tuned alongside the U-Net, enabling dataset-specific synthesis.
|
| 27 |
+
|
| 28 |
+
## 🧠 Training Details
|
| 29 |
+
|
| 30 |
+
- **Base Model:** [`CompVis/stable-diffusion-v1-4`](https://huggingface.co/CompVis/stable-diffusion-v1-4)
|
| 31 |
+
- **Architecture:** Latent Diffusion with U-Net + ResNet + Attention
|
| 32 |
+
- **Input resolution (latent):** 32x32
|
| 33 |
+
- **Output resolution (decoded):** 256x256 pixels
|
| 34 |
+
- **Datasets:** SHIFTS, VH, and WMH2017 (FLAIR MRI slices)
|
| 35 |
+
- **Channels:** 4 latent channels
|
| 36 |
+
- **Epochs:** 50
|
| 37 |
+
- **Batch size:** 8
|
| 38 |
+
- **Gradient accumulation:** 4 steps
|
| 39 |
+
- **Optimizer:** AdamW
|
| 40 |
+
- Learning Rate: `1.0e-4`
|
| 41 |
+
- Betas: (0.95, 0.999)
|
| 42 |
+
- Weight Decay: `1.0e-6`
|
| 43 |
+
- Epsilon: `1.0e-8`
|
| 44 |
+
- **LR Scheduler:** Cosine schedule with 500 warm-up steps
|
| 45 |
+
- **Noise Scheduler:** DDPM with:
|
| 46 |
+
- `num_train_timesteps`: 1000
|
| 47 |
+
- `beta_start`: 0.0001
|
| 48 |
+
- `beta_end`: 0.02
|
| 49 |
+
- `beta_schedule`: "linear"
|
| 50 |
+
- **Mixed Precision:** Disabled
|
| 51 |
+
- **Gradient Clipping:** max norm 1.0
|
| 52 |
+
- **Hardware:** NVIDIA A30 GPU with 4 dataloader workers
|
| 53 |
+
|
| 54 |
+
## 🧪 Usage
|
| 55 |
+
|
| 56 |
+
You can use this model via the `diffusers` library for conditional generation:
|
| 57 |
+
|
| 58 |
+
```python
|
| 59 |
+
from diffusers import DiffusionPipeline
|
| 60 |
+
import torch
|
| 61 |
+
|
| 62 |
+
# Load the model
|
| 63 |
+
pipe = DiffusionPipeline.from_pretrained("benetraco/latent_finetuning")
|
| 64 |
+
pipe.to("cuda") # or "cpu"
|
| 65 |
+
|
| 66 |
+
# Generate a brain MRI image in SHIFTS style
|
| 67 |
+
prompt = "SHIFTS FLAIR MRI"
|
| 68 |
+
image = pipe(prompt=prompt, num_inference_steps=50, guidance_scale=2.0).images[0]
|
| 69 |
+
|
| 70 |
+
image.show()
|