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README.md
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license: apache-2.0
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---
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| 1 |
---
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license: apache-2.0
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+
library_name: pytorch
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+
tags:
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- image-classification
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- medical-ai
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- dermatology
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- skin-lesion-classification
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- ham10000
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- efficientnetv2
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- pytorch
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- baseline
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datasets:
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- ham10000
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metrics:
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- accuracy
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- f1
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- balanced_accuracy
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pipeline_tag: image-classification
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---
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# EfficientNetV2-S HAM10000 Image-Only Baseline
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## Model Summary
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This repository contains an **EfficientNetV2-S image-only baseline** trained on the HAM10000 dataset for 7-class dermatoscopic skin-lesion classification.
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The checkpoint is intended as a **research baseline** for a multimodal learning study comparing:
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1. image-only classification,
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2. metadata-only classification,
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3. late-fusion image + metadata classification.
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This model uses **dermatoscopic images only**. It does **not** use patient metadata such as age, sex, or anatomical site.
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> **Important:** This model is not intended for clinical diagnosis, treatment decisions, patient triage, or deployment in medical settings.
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## Intended Use
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### Intended Uses
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- Research and education.
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- Baseline comparison for medical image classification experiments.
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- Reproducible comparison against metadata-only and late-fusion HAM10000 models.
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- Portfolio demonstration of medical AI model development, class-imbalance handling, and evaluation.
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### Out-of-Scope Uses
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- Clinical diagnosis or screening.
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- Replacing dermatologists, clinicians, or qualified medical professionals.
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- Patient-facing decision support.
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- Treatment recommendation or medical reassurance.
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- Real-world medical deployment without clinical validation, regulatory review, and appropriate safety controls.
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## Dataset
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The model was trained and evaluated on **HAM10000**, a dermatoscopic image dataset containing common pigmented skin lesions.
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The label mapping used in this project is:
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| Label ID | Class Code | Lesion Type |
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|---:|---|---|
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| 0 | `akiec` | Actinic keratoses and intraepithelial carcinoma / Bowen's disease |
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| 1 | `bcc` | Basal cell carcinoma |
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| 2 | `bkl` | Benign keratosis-like lesions |
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| 3 | `df` | Dermatofibroma |
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| 4 | `mel` | Melanoma |
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| 5 | `nv` | Melanocytic nevi |
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| 6 | `vasc` | Vascular lesions |
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## Data Split
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The model was trained using stratified train/validation/test splits.
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| Split | Size |
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|---|---:|
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| Train | 7,966 |
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| Validation | 996 |
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| Test | 996 |
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Training-set class counts:
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| Label ID | Class Code | Train Count |
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|---:|---|---:|
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| 0 | `akiec` | 261 |
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| 1 | `bcc` | 411 |
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| 2 | `bkl` | 871 |
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| 3 | `df` | 92 |
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| 4 | `mel` | 889 |
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| 5 | `nv` | 5,328 |
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| 6 | `vasc` | 114 |
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## Model Architecture
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- Backbone: `torchvision.models.efficientnet_v2_s`
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- Pretraining: ImageNet-1K pretrained weights
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- Classifier head: final linear layer replaced with a 7-class output layer
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- Input modality: RGB dermatoscopic images only
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- Output: 7-class lesion prediction
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## Preprocessing
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All images were resized and normalized before being passed into the model.
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- Input image mode: RGB
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- Image size: `224 x 224`
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- Normalization: ImageNet mean and standard deviation
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- Mean: `[0.485, 0.456, 0.406]`
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- Standard deviation: `[0.229, 0.224, 0.225]`
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Training augmentations:
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- Resize to `224 x 224`
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- Random horizontal flip
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- Random vertical flip
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- Random rotation up to 15 degrees
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- ImageNet normalization
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Evaluation preprocessing:
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- Resize to `224 x 224`
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- ImageNet normalization
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## Training Details
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Training setup:
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| Setting | Value |
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|---|---|
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| Framework | PyTorch / torchvision |
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| Hardware used in notebook | NVIDIA Tesla T4 |
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| Batch size | 32 |
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| Maximum epochs | 10 |
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| Early stopping patience | 3 epochs |
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| Selection metric | Validation macro-F1 |
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| Loss | Class-weighted cross-entropy |
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| Best epoch | 6 |
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| Best validation macro-F1 | 0.8370 |
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| Best validation balanced accuracy | 0.8312 |
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| Best validation accuracy | 0.8785 |
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Class weights were computed from the training split as:
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| Label ID | Class Code | Class Weight |
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|---:|---|---:|
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| 0 | `akiec` | 4.3602 |
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| 1 | `bcc` | 2.7689 |
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| 2 | `bkl` | 1.3065 |
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| 3 | `df` | 12.3696 |
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| 4 | `mel` | 1.2801 |
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| 5 | `nv` | 0.2136 |
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| 6 | `vasc` | 9.9825 |
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## Evaluation
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The model was evaluated on a held-out test set of 996 images.
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### Test Metrics
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| Metric | Value |
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|---|---:|
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| Accuracy | 0.8665 |
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| Macro-F1 | 0.8042 |
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| Weighted F1 | 0.8679 |
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| Balanced Accuracy | 0.8342 |
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### Per-Class Test Performance
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| Label ID | Class Code | Precision | Recall | F1-score | Support |
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|---:|---|---:|---:|---:|---:|
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| 0 | `akiec` | 0.7778 | 0.8485 | 0.8116 | 33 |
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| 1 | `bcc` | 0.7742 | 0.9231 | 0.8421 | 52 |
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| 2 | `bkl` | 0.7921 | 0.7339 | 0.7619 | 109 |
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| 3 | `df` | 0.8889 | 0.7273 | 0.8000 | 11 |
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| 4 | `mel` | 0.6364 | 0.6937 | 0.6638 | 111 |
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| 5 | `nv` | 0.9397 | 0.9129 | 0.9261 | 666 |
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| 6 | `vasc` | 0.7000 | 1.0000 | 0.8235 | 14 |
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### Confusion Matrix
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Rows are true labels and columns are predicted labels.
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| True \\ Pred | 0 | 1 | 2 | 3 | 4 | 5 | 6 |
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|---:|---:|---:|---:|---:|---:|---:|---:|
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| 0 | 28 | 3 | 0 | 1 | 0 | 1 | 0 |
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| 1 | 0 | 48 | 1 | 0 | 2 | 1 | 0 |
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| 2 | 5 | 3 | 80 | 0 | 10 | 10 | 1 |
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| 3 | 0 | 1 | 0 | 8 | 0 | 2 | 0 |
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| 4 | 1 | 0 | 6 | 0 | 77 | 25 | 2 |
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| 5 | 2 | 7 | 14 | 0 | 32 | 608 | 3 |
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| 6 | 0 | 0 | 0 | 0 | 0 | 0 | 14 |
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## Example Usage
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This checkpoint stores the model weights for an EfficientNetV2-S architecture with a 7-class classifier head.
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```python
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import torch
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import torch.nn as nn
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from torchvision import models, transforms
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from PIL import Image
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label_mapping = {
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0: "akiec",
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1: "bcc",
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2: "bkl",
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3: "df",
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4: "mel",
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5: "nv",
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6: "vasc",
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}
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image_size = 224
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preprocess = transforms.Compose([
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transforms.Resize((image_size, image_size)),
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transforms.ToTensor(),
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transforms.Normalize(
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mean=[0.485, 0.456, 0.406],
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std=[0.229, 0.224, 0.225],
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),
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])
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model = models.efficientnet_v2_s(weights=None)
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in_features = model.classifier[1].in_features
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model.classifier[1] = nn.Linear(in_features, 7)
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state_dict = torch.load("efficientnetv2s_image_only_state_dict.pt", map_location="cpu")
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model.load_state_dict(state_dict)
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model.eval()
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image = Image.open("example.jpg").convert("RGB")
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inputs = preprocess(image).unsqueeze(0)
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with torch.no_grad():
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logits = model(inputs)
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probs = torch.softmax(logits, dim=1)
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pred_id = int(probs.argmax(dim=1).item())
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print(label_mapping[pred_id], float(probs[0, pred_id]))
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```
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If using a full training checkpoint instead of a plain state dictionary, load the nested key:
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```python
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checkpoint = torch.load("best_efficientnetv2s_image_only_ham10000.pt", map_location="cpu")
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model.load_state_dict(checkpoint["model_state_dict"])
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```
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## Limitations
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- The model was trained on HAM10000 and may learn dataset-specific patterns or shortcuts.
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- HAM10000 is highly class-imbalanced, with melanocytic nevi (`nv`) heavily represented.
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- Some classes have small test support, such as dermatofibroma (`df`) and vascular lesions (`vasc`), so per-class estimates may be unstable.
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- The model does not use patient metadata such as age, sex, or anatomical site.
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- Performance may vary across demographic groups, imaging devices, clinical contexts, and lesion presentations.
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- The model has not been clinically validated.
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- This checkpoint is a research baseline and should not be interpreted as a medical device.
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## Ethical and Safety Considerations
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This model concerns medical image classification. Incorrect predictions could cause harm if used for clinical or patient-facing decisions. The model should only be used for research, education, and controlled experimentation.
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Do **not** use this model to diagnose skin cancer, decide whether a lesion is benign or malignant, delay care, recommend treatment, or replace consultation with qualified medical professionals.
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## Project Context
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This model is part of a broader portfolio project on multimodal HAM10000 classification. The planned comparison is:
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1. **Image-only EfficientNetV2-S baseline** — this model.
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2. **Metadata-only MLP baseline** — age, sex, and anatomical-site features only.
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3. **Late-fusion image + metadata model** — image features combined with tabular metadata.
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The purpose is to test whether metadata improves classification performance beyond the image-only baseline and to document the strengths, limitations, and possible shortcut risks of metadata fusion.
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## Training Notebook
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The training and evaluation workflow is documented in:
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- `ham10000-image-baseline.ipynb`
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## Citation
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If using this model or reproducing the project, cite the HAM10000 dataset paper:
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```bibtex
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@article{tschandl2018ham10000,
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title={The HAM10000 dataset, a large collection of multi-source dermatoscopic images of common pigmented skin lesions},
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| 288 |
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author={Tschandl, Philipp and Rosendahl, Cliff and Kittler, Harald},
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| 289 |
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journal={Scientific Data},
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| 290 |
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volume={5},
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| 291 |
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number={1},
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| 292 |
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pages={1--9},
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| 293 |
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year={2018},
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| 294 |
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publisher={Nature Publishing Group}
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| 295 |
+
}
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| 296 |
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```
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## License
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This model repository is released under the Apache License 2.0.
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