# scripts/figures

figure builders for `PAPER.tex` + `figures/PANDA_supplement.pdf`. all figures load
from real artefacts under `discovery/`, `checkpoints/`, and the corpus files -- no
hardcoded numbers.

| script | output |
|---|---|
| `generate_paper_figures.py`   | main-text figures 1-4 (per-class F1 bars, volcano, heatmap, stage stack) |
| `generate_umap.py`            | Dingwall 2-panel UMAP (predicted class + genotype) |
| `generate_multi_umap.py`      | 3-panel cross-system UMAP (Dingwall + Dahlin + Veres) |
| `build_skin_corpus_umap.py`   | full pan-skin training-corpus UMAP |
| `build_figure_supplement.py`  | master builder for the multi-page supplement |
| `build_umaps_and_discovery.py`| per-target UMAPs + mechanistic-evidence panels |