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925ee3b | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | """Pancreas endocrinogenesis dataset."""
from __future__ import annotations
from pathlib import Path
import anndata as ad
from anndata import AnnData
def pancreas() -> AnnData:
"""Load the pancreas endocrinogenesis dataset.
This dataset contains ~3,700 cells from mouse pancreas
endocrinogenesis (Bastidas-Ponce et al. 2019), commonly used
for RNA velocity benchmarking.
Returns
-------
AnnData with unspliced and spliced layers.
"""
cache_path = Path.home() / ".cache" / "scptr" / "pancreas.h5ad"
if cache_path.exists():
return ad.read_h5ad(cache_path)
from ._registry import fetch
path = fetch("pancreas.h5ad")
return ad.read_h5ad(path)
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