scPTR / src /scptr /datasets /_sci_fate.py
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"""sci-fate metabolic labeling dataset."""
from __future__ import annotations
import anndata as ad
from anndata import AnnData
from ._registry import fetch
def sci_fate() -> AnnData:
"""Load the sci-fate metabolic labeling dataset.
This dataset contains cells with metabolic labeling (Cao et al. 2020),
useful for validating degradation rate estimates against direct
measurements of RNA turnover.
Returns
-------
AnnData with unspliced and spliced layers.
"""
path = fetch("sci_fate.h5ad")
return ad.read_h5ad(path)