| python -u pcomol_batch_multi_edits_log_length_tier_runtime.py \ | |
| --config /scratch/pranamlab/tong/pCoMol/configs/config_gfp.yaml \ | |
| --ckpt /scratch/pranamlab/tong/pCoMol/gfp/ckpt/lr1e-5_epoch500_scale0.5_optimal0_uniprot_mt4096_leq350_n50k_lr1e-5_ge_1_gr_1.ckpt \ | |
| --num_steps 10 \ | |
| --num_candidates 50 \ | |
| --num_rollouts 10 \ | |
| --objective_weights 3 1 1 \ | |
| --objective_set length_brightness_excitation \ | |
| --rho 0.5 \ | |
| --output_file './samples/uniprot/pcomol_gfp_tier_runtime.csv' \ | |
| --first_hit_file './samples/uniprot/pcomol_gfp_tier_first_hit_summary.csv' \ | |
| --input 'MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK' \ | |
| --max_samples 100 \ | |
| --stop_after_all_tiers |
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