evaluation/temperature_sweep/Base_summary.csv

model,temperature,n_total,n_passed,pass_rate_pct,n_distinct_ori_families_plannotate,top_ori_families,diversity_21mer_jaccard
Base,0.3,200,1,0.5,9,M13 bacteriophage origin of replication; arrow indicates direction of;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;SV40 origin of replication;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication;origin of replication for the Pseudomonas plasmid pVS1;secondary origin of replication for the bacterial F plasmid; also known as oriS,0.9687
Base,0.5,200,8,4.0,13,M13 bacteriophage origin of replication; arrow indicates direction of;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;S. cerevisiae autonomously replicating sequence ARS1;SV40 origin of replication;VRPO_LAMBD - Protein inferred from homology: Swiss-Prot protein existence level 3. Necessary for the bidirectional replication of DNA. It interacts with the ori;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication,0.9727
Base,0.8,200,12,6.0,18,"Epstein-Barr nuclear antigen 1, also known as EBNA-1 crucial for latent viral infection, and for episomal amplification of vectors containing the oriP origin;Epstein-Barr virus oriP replication origin;M13 bacteriophage origin of replication; arrow indicates direction of;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;RepA protein needed for replication with the pSC101 origin; rep101;S. cerevisiae autonomously replicating sequence ARS1;SV40 origin of replication",0.9727
Base,0.95,200,17,8.5,19,"M13 bacteriophage origin of replication; arrow indicates direction of;Plasmids containing the CloDF13;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;Protein inferred from homology: Swiss-Prot protein existence level 3. Isoform large T antigen is a key early protein essential for both driving viral replication and inducing cellular transformation. Plays a role in viral genome replication by driving entry of quiescent cells into the cell cycle and by autoregulating the synthesis of viral early mRNA. Displays highly oncogenic activities by corrupting the host cellular checkpoint mechanisms that guard cell division and the transcription, replication, and repair of DNA. Participates in the modulation of cellular gene expression preceeding viral DNA replication. This step involves binding to host key cell cycle regulators retinoblastoma protein RB1/pRb and TP53. Induces the disassembly of host E2F1 transcription factors from RB1, thus promoting transcriptional activation of E2F1-regulated S-phase genes. Inhibits host TP53 binding to DNA, abrogating the ability of TP53 to stimulate gene expression. Plays the role of a TFIID-associated factor;RepA protein needed for replication with the pSC101 origin; rep101;S. cerevisiae autonomously replicating sequence ARS1;SV40 origin of replication",0.9775
Base,1.0,200,22,11.0,15,M13 bacteriophage origin of replication; arrow indicates direction of;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;S. cerevisiae autonomously replicating sequence ARS1;SV40 origin of replication;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication,0.9754
Base,1.15,200,19,9.5,17,M13 bacteriophage origin of replication; arrow indicates direction of;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;RepA protein needed for replication with the pSC101 origin; rep101;S. cerevisiae autonomously replicating sequence ARS1;SV40 origin of replication;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication,0.9725
Base,1.3,200,16,8.0,20,Epstein-Barr virus oriP replication origin;M13 bacteriophage origin of replication; arrow indicates direction of;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;S. cerevisiae autonomously replicating sequence ARS1;SV40 origin of replication;TRAI6_ECOLX - Experimental evidence at protein level: Swiss-Prot protein existence level 1. The initiation process of transfer DNA synthesis requires the interaction of at least three plasmid-specific components;f1 bacteriophage origin of replication; arrow indicates direction of,0.9769