evaluation/temperature_sweep/GRPO_summary.csv

model,temperature,n_total,n_passed,pass_rate_pct,n_distinct_ori_families_plannotate,top_ori_families,diversity_21mer_jaccard
GRPO,0.3,200,0,0.0,7,Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication;origin of replication for the Pseudomonas plasmid pVS1;secondary origin of replication for the bacterial F plasmid; also known as oriS;yeast 2μ plasmid origin of replication,0.8401
GRPO,0.5,200,9,4.5,9,Epstein-Barr virus oriP replication origin;Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.;S. cerevisiae autonomously replicating sequence ARS1;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication;incP origin of transfer;internally truncated variant of the Epstein-Barr virus oriP replication origin,0.6898
GRPO,0.8,200,116,58.0,7,Epstein-Barr virus oriP replication origin;Plasmids containing the RSF 1030 origin of replication can be propagated in E. coli cells that contain additional plasmids with compatible origins.;SV40 origin of replication;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication;yeast 2μ plasmid origin of replication,0.5939
GRPO,0.95,200,167,83.5,5,f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication;internally truncated variant of the Epstein-Barr virus oriP replication origin;yeast 2μ plasmid origin of replication,0.5487
GRPO,1.0,200,164,82.0,9,Epstein-Barr virus oriP replication origin;M13 bacteriophage origin of replication; arrow indicates direction of;SV40 origin of replication;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication;incP origin of transfer;temperature-sensitive version of the RepA protein needed for replication with the pSC101 origin,0.5576
GRPO,1.15,200,193,96.5,8,"Epstein-Barr virus oriP replication origin;S. cerevisiae autonomously replicating sequence ARS1;TERM_ADE02 - Experimental evidence at protein level: Swiss-Prot protein existence level 1. Protein covalently bound to the viral DNA that acts as a primer for viral genomic replication by DNA strand displacement. Assembles on the viral origin of replication in an initiation complex with viral polymerase, DBP, host NFIA and host POU2F1/OCT1. During initiation, the polymerase covalently couples the first dCTP with Ser- 580 of pTP. The terminal protein stimulates the template activity over 20 fold compared to protein-free templates. Neo-synthesized viral genomes are linked to two preterminal proteins, one for each 5' end. These new genomes are encapsidated in the nucleus, and during capsid maturation by viral protease, preterminal protein is first cleaved into intermediary;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;origin of replication for the Pseudomonas plasmid pVS1;temperature-sensitive version of the RepA protein needed for replication with the pSC101 origin;yeast 2μ plasmid origin of replication",0.5372
GRPO,1.3,200,192,96.0,8,"S. cerevisiae autonomously replicating sequence ARS1;SV40 origin of replication;TERM_ADE02 - Experimental evidence at protein level: Swiss-Prot protein existence level 1. Protein covalently bound to the viral DNA that acts as a primer for viral genomic replication by DNA strand displacement. Assembles on the viral origin of replication in an initiation complex with viral polymerase, DBP, host NFIA and host POU2F1/OCT1. During initiation, the polymerase covalently couples the first dCTP with Ser- 580 of pTP. The terminal protein stimulates the template activity over 20 fold compared to protein-free templates. Neo-synthesized viral genomes are linked to two preterminal proteins, one for each 5' end. These new genomes are encapsidated in the nucleus, and during capsid maturation by viral protease, preterminal protein is first cleaved into intermediary;f1 bacteriophage origin of replication; arrow indicates direction of;high-copy-number ColE1/pMB1/pBR322/pUC origin of replication;incP origin of replication;origin of replication for the Pseudomonas plasmid pVS1;yeast 2μ plasmid origin of replication",0.5823