plannotate/RL/feature_breakdown.json

{
  "n_sequences_annotated": 3892,
  "total_hits": 74381,
  "by_type": {
    "CDS": 34613,
    "promoter": 14421,
    "rep_origin": 7807,
    "protein_bind": 6007,
    "terminator": 4020,
    "misc_feature": 3117,
    "RBS": 2900,
    "polyA_signal": 798,
    "enhancer": 518,
    "gene": 89,
    "LTR": 39,
    "intron": 27,
    "mobile_element": 13,
    "ncRNA": 4,
    "oriT": 3,
    "sig_peptide": 3,
    "repeat_region": 2
  },
  "by_type_and_description": [
    {
      "type": "CDS",
      "description": "tetracycline efflux protein; tet; confers resistance to tetracycline",
      "count": 6771
    },
    {
      "type": "rep_origin",
      "description": "high-copy-number ColE1/pMB1/pBR322/pUC origin of replication",
      "count": 4353
    },
    {
      "type": "promoter",
      "description": "Drosophila melanogaster actin 5C promoter",
      "count": 3825
    },
    {
      "type": "promoter",
      "description": "bla",
      "count": 3815
    },
    {
      "type": "CDS",
      "description": "aminoglycoside phosphotransferase; aph(3')-Ia; confers resistance to kanamycin in bacteria or G418 (Geneticin\u00ae) in eukaryotes",
      "count": 3327
    },
    {
      "type": "CDS",
      "description": "lac repressor; lacI; The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-\u03b2-D-thiogalactopyranoside (IPTG).",
      "count": 3029
    },
    {
      "type": "promoter",
      "description": "promoter for bacteriophage T7 RNA polymerase",
      "count": 2985
    },
    {
      "type": "misc_feature",
      "description": "basis of mobility region from pBR322",
      "count": 2934
    },
    {
      "type": "CDS",
      "description": "Rop protein, which maintains plasmids at low copy number; rop",
      "count": 2930
    },
    {
      "type": "protein_bind",
      "description": "CAP binding activates transcription in the presence of cAMP. E. coli catabolite activator protein",
      "count": 2929
    },
    {
      "type": "protein_bind",
      "description": "The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-\u03b2-D-thiogalactopyranoside (IPTG). lac repressor encoded by lacI",
      "count": 2913
    },
    {
      "type": "CDS",
      "description": "composite tag for in vivo biotinylation, TEV protease cleavage, and 6xHis tagging",
      "count": 2904
    },
    {
      "type": "CDS",
      "description": "Protein predicted: Swiss-Prot protein existence level 4. From Escherichia coli.",
      "count": 2902
    },
    {
      "type": "RBS",
      "description": "efficient ribosome binding site from bacteriophage T7 gene 10 (Olins and Rangwala, 1989)",
      "count": 2900
    },
    {
      "type": "promoter",
      "description": "lacI",
      "count": 2898
    },
    {
      "type": "CDS",
      "description": "thrombin recognition and cleavage site",
      "count": 2882
    },
    {
      "type": "rep_origin",
      "description": "f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis",
      "count": 2859
    },
    {
      "type": "terminator",
      "description": "transcription terminator for bacteriophage T7 RNA polymerase",
      "count": 2853
    },
    {
      "type": "CDS",
      "description": "solubility-enhancement tag derived from T7 phage gene 10B",
      "count": 2848
    },
    {
      "type": "CDS",
      "description": "9xHis affinity tag",
      "count": 2747
    },
    {
      "type": "CDS",
      "description": "\u03b2-lactamase; bla; confers resistance to ampicillin, carbenicillin, and related antibiotics",
      "count": 991
    },
    {
      "type": "polyA_signal",
      "description": "SV40 polyadenylation signal",
      "count": 763
    },
    {
      "type": "CDS",
      "description": "large T antigen from SV40 (simian virus 40)",
      "count": 759
    },
    {
      "type": "CDS",
      "description": "epitope tag from simian virus 5",
      "count": 750
    },
    {
      "type": "CDS",
      "description": "puromycin N-acetyltransferase; pac from Streptomyces; confers resistance to puromycin",
      "count": 635
    },
    {
      "type": "terminator",
      "description": "transcription terminator T1 from the E. coli rrnB gene",
      "count": 539
    },
    {
      "type": "terminator",
      "description": "phage T7 early transcription terminator",
      "count": 537
    },
    {
      "type": "promoter",
      "description": "bacterial promoter (Registry of Standard Biological Parts BBa J23119)",
      "count": 525
    },
    {
      "type": "rep_origin",
      "description": "Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.",
      "count": 515
    },
    {
      "type": "enhancer",
      "description": "human cytomegalovirus immediate early enhancer",
      "count": 507
    },
    {
      "type": "CDS",
      "description": "hfriFP is a fluorescent protein published in 2013, derived from Herbaspirillum frisingense.",
      "count": 500
    },
    {
      "type": "promoter",
      "description": "E. coli promoter for tetracycline efflux protein gene",
      "count": 91
    },
    {
      "type": "protein_bind",
      "description": "mutant version of attB; recombination site for the Gateway\u00ae BP reaction BP Clonase\u2122",
      "count": 90
    },
    {
      "type": "gene",
      "description": "yeast selectable marker conferring kanamycin resistance (Wach et al., 1994)",
      "count": 69
    },
    {
      "type": "misc_feature",
      "description": "universal suffix for all parts",
      "count": 62
    },
    {
      "type": "protein_bind",
      "description": "mutant version of attB; core recombination site for the Gateway\u00ae BP reaction BP Clonase\u2122",
      "count": 52
    },
    {
      "type": "CDS",
      "description": "LacZ\u03b1 fragment of \u03b2-galactosidase; lacZ fragment",
      "count": 41
    },
    {
      "type": "promoter",
      "description": "Ashbya gossypii TEF promoter",
      "count": 34
    },
    {
      "type": "CDS",
      "description": "stability protein from the Pseudomonas plasmid pVS1 (Heeb et al., 2000)",
      "count": 33
    },
    {
      "type": "CDS",
      "description": "\u03b2-lactamase lacking the signal sequence; bla(M); allows cytosolic expression of \u03b2-lactamase",
      "count": 29
    },
    {
      "type": "terminator",
      "description": "transcription terminator from phage lambda",
      "count": 25
    },
    {
      "type": "misc_feature",
      "description": "pUC18/19 multiple cloning site",
      "count": 25
    },
    {
      "type": "CDS",
      "description": "replication protein from the Pseudomonas plasmid pVS1 (Heeb et al., 2000)",
      "count": 24
    },
    {
      "type": "misc_feature",
      "description": "S. cerevisiae CEN6 centromere fused to an autonomously replicating sequence",
      "count": 23
    },
    {
      "type": "promoter",
      "description": "promoter for the E. coli lac operon",
      "count": 23
    },
    {
      "type": "CDS",
      "description": "gentamycin acetyltransferase; aacC1; confers resistance to gentamycin",
      "count": 22
    },
    {
      "type": "CDS",
      "description": "aminoglycoside adenylyltransferase (Murphy, 1985); aadA; confers resistance to spectinomycin and streptomycin",
      "count": 22
    },
    {
      "type": "CDS",
      "description": "orotidine-5'-phosphate decarboxylase, required for uracil biosynthesis; S. cerevisiae URA3; yeast auxotrophic marker, counterselectable with 5-fluoroorotic acid (5-FOA)",
      "count": 20
    },
    {
      "type": "gene",
      "description": "yeast selectable marker conferring hygromycin resistance",
      "count": 20
    },
    {
      "type": "promoter",
      "description": "promoter for bacteriophage SP6 RNA polymerase",
      "count": 18
    },
    {
      "type": "CDS",
      "description": "aminoglycoside phosphotransferase from E. coli confers resistance to hygromycin",
      "count": 17
    },
    {
      "type": "CDS",
      "description": "three tandem HA epitope tags",
      "count": 16
    },
    {
      "type": "CDS",
      "description": "REGN_LAMBD - Experimental evidence at protein level: Swiss-Prot protein existence level 1. Plays a role as a transcriptional antitermination factor that allows the virus to initiate its lytic phase. Activates expression of the delayed viral early genes by modifying host RNA polymerase (RNAP) into a form that is resistant to termination signals. This antitermination function requires the host NusA protein which serves to stabilize the interaction between antitermination protein N and host RNA polymerase. From Escherichia phage lambda (Bacteriophage lambda).",
      "count": 16
    },
    {
      "type": "rep_origin",
      "description": "incP origin of replication",
      "count": 16
    },
    {
      "type": "promoter",
      "description": "promoter for bacteriophage T3 RNA polymerase",
      "count": 16
    },
    {
      "type": "terminator",
      "description": "putative bacterial transcription terminator",
      "count": 16
    },
    {
      "type": "rep_origin",
      "description": "yeast 2\u03bc plasmid origin of replication",
      "count": 15
    },
    {
      "type": "promoter",
      "description": "Drosophila melanogaster actin 5c promoter",
      "count": 15
    },
    {
      "type": "LTR",
      "description": "truncated 5' long terminal repeat (LTR) from HIV-1",
      "count": 15
    },
    {
      "type": "promoter",
      "description": "strong E. coli promoter; hybrid between the trp and lac UV5 promoters",
      "count": 15
    }
  ]
}