| | """Test functions for matrix module
|
| |
|
| | """
|
| | from numpy.testing import (
|
| | assert_equal, assert_array_equal, assert_array_max_ulp,
|
| | assert_array_almost_equal, assert_raises, assert_
|
| | )
|
| | from numpy import (
|
| | arange, add, fliplr, flipud, zeros, ones, eye, array, diag, histogram2d,
|
| | tri, mask_indices, triu_indices, triu_indices_from, tril_indices,
|
| | tril_indices_from, vander,
|
| | )
|
| | import numpy as np
|
| |
|
| | import pytest
|
| |
|
| |
|
| | def get_mat(n):
|
| | data = arange(n)
|
| | data = add.outer(data, data)
|
| | return data
|
| |
|
| |
|
| | class TestEye:
|
| | def test_basic(self):
|
| | assert_equal(eye(4),
|
| | array([[1, 0, 0, 0],
|
| | [0, 1, 0, 0],
|
| | [0, 0, 1, 0],
|
| | [0, 0, 0, 1]]))
|
| |
|
| | assert_equal(eye(4, dtype='f'),
|
| | array([[1, 0, 0, 0],
|
| | [0, 1, 0, 0],
|
| | [0, 0, 1, 0],
|
| | [0, 0, 0, 1]], 'f'))
|
| |
|
| | assert_equal(eye(3) == 1,
|
| | eye(3, dtype=bool))
|
| |
|
| | def test_uint64(self):
|
| |
|
| | assert_equal(eye(np.uint64(2), dtype=int), array([[1, 0], [0, 1]]))
|
| | assert_equal(eye(np.uint64(2), M=np.uint64(4), k=np.uint64(1)),
|
| | array([[0, 1, 0, 0], [0, 0, 1, 0]]))
|
| |
|
| | def test_diag(self):
|
| | assert_equal(eye(4, k=1),
|
| | array([[0, 1, 0, 0],
|
| | [0, 0, 1, 0],
|
| | [0, 0, 0, 1],
|
| | [0, 0, 0, 0]]))
|
| |
|
| | assert_equal(eye(4, k=-1),
|
| | array([[0, 0, 0, 0],
|
| | [1, 0, 0, 0],
|
| | [0, 1, 0, 0],
|
| | [0, 0, 1, 0]]))
|
| |
|
| | def test_2d(self):
|
| | assert_equal(eye(4, 3),
|
| | array([[1, 0, 0],
|
| | [0, 1, 0],
|
| | [0, 0, 1],
|
| | [0, 0, 0]]))
|
| |
|
| | assert_equal(eye(3, 4),
|
| | array([[1, 0, 0, 0],
|
| | [0, 1, 0, 0],
|
| | [0, 0, 1, 0]]))
|
| |
|
| | def test_diag2d(self):
|
| | assert_equal(eye(3, 4, k=2),
|
| | array([[0, 0, 1, 0],
|
| | [0, 0, 0, 1],
|
| | [0, 0, 0, 0]]))
|
| |
|
| | assert_equal(eye(4, 3, k=-2),
|
| | array([[0, 0, 0],
|
| | [0, 0, 0],
|
| | [1, 0, 0],
|
| | [0, 1, 0]]))
|
| |
|
| | def test_eye_bounds(self):
|
| | assert_equal(eye(2, 2, 1), [[0, 1], [0, 0]])
|
| | assert_equal(eye(2, 2, -1), [[0, 0], [1, 0]])
|
| | assert_equal(eye(2, 2, 2), [[0, 0], [0, 0]])
|
| | assert_equal(eye(2, 2, -2), [[0, 0], [0, 0]])
|
| | assert_equal(eye(3, 2, 2), [[0, 0], [0, 0], [0, 0]])
|
| | assert_equal(eye(3, 2, 1), [[0, 1], [0, 0], [0, 0]])
|
| | assert_equal(eye(3, 2, -1), [[0, 0], [1, 0], [0, 1]])
|
| | assert_equal(eye(3, 2, -2), [[0, 0], [0, 0], [1, 0]])
|
| | assert_equal(eye(3, 2, -3), [[0, 0], [0, 0], [0, 0]])
|
| |
|
| | def test_strings(self):
|
| | assert_equal(eye(2, 2, dtype='S3'),
|
| | [[b'1', b''], [b'', b'1']])
|
| |
|
| | def test_bool(self):
|
| | assert_equal(eye(2, 2, dtype=bool), [[True, False], [False, True]])
|
| |
|
| | def test_order(self):
|
| | mat_c = eye(4, 3, k=-1)
|
| | mat_f = eye(4, 3, k=-1, order='F')
|
| | assert_equal(mat_c, mat_f)
|
| | assert mat_c.flags.c_contiguous
|
| | assert not mat_c.flags.f_contiguous
|
| | assert not mat_f.flags.c_contiguous
|
| | assert mat_f.flags.f_contiguous
|
| |
|
| |
|
| | class TestDiag:
|
| | def test_vector(self):
|
| | vals = (100 * arange(5)).astype('l')
|
| | b = zeros((5, 5))
|
| | for k in range(5):
|
| | b[k, k] = vals[k]
|
| | assert_equal(diag(vals), b)
|
| | b = zeros((7, 7))
|
| | c = b.copy()
|
| | for k in range(5):
|
| | b[k, k + 2] = vals[k]
|
| | c[k + 2, k] = vals[k]
|
| | assert_equal(diag(vals, k=2), b)
|
| | assert_equal(diag(vals, k=-2), c)
|
| |
|
| | def test_matrix(self, vals=None):
|
| | if vals is None:
|
| | vals = (100 * get_mat(5) + 1).astype('l')
|
| | b = zeros((5,))
|
| | for k in range(5):
|
| | b[k] = vals[k, k]
|
| | assert_equal(diag(vals), b)
|
| | b = b * 0
|
| | for k in range(3):
|
| | b[k] = vals[k, k + 2]
|
| | assert_equal(diag(vals, 2), b[:3])
|
| | for k in range(3):
|
| | b[k] = vals[k + 2, k]
|
| | assert_equal(diag(vals, -2), b[:3])
|
| |
|
| | def test_fortran_order(self):
|
| | vals = array((100 * get_mat(5) + 1), order='F', dtype='l')
|
| | self.test_matrix(vals)
|
| |
|
| | def test_diag_bounds(self):
|
| | A = [[1, 2], [3, 4], [5, 6]]
|
| | assert_equal(diag(A, k=2), [])
|
| | assert_equal(diag(A, k=1), [2])
|
| | assert_equal(diag(A, k=0), [1, 4])
|
| | assert_equal(diag(A, k=-1), [3, 6])
|
| | assert_equal(diag(A, k=-2), [5])
|
| | assert_equal(diag(A, k=-3), [])
|
| |
|
| | def test_failure(self):
|
| | assert_raises(ValueError, diag, [[[1]]])
|
| |
|
| |
|
| | class TestFliplr:
|
| | def test_basic(self):
|
| | assert_raises(ValueError, fliplr, ones(4))
|
| | a = get_mat(4)
|
| | b = a[:, ::-1]
|
| | assert_equal(fliplr(a), b)
|
| | a = [[0, 1, 2],
|
| | [3, 4, 5]]
|
| | b = [[2, 1, 0],
|
| | [5, 4, 3]]
|
| | assert_equal(fliplr(a), b)
|
| |
|
| |
|
| | class TestFlipud:
|
| | def test_basic(self):
|
| | a = get_mat(4)
|
| | b = a[::-1, :]
|
| | assert_equal(flipud(a), b)
|
| | a = [[0, 1, 2],
|
| | [3, 4, 5]]
|
| | b = [[3, 4, 5],
|
| | [0, 1, 2]]
|
| | assert_equal(flipud(a), b)
|
| |
|
| |
|
| | class TestHistogram2d:
|
| | def test_simple(self):
|
| | x = array(
|
| | [0.41702200, 0.72032449, 1.1437481e-4, 0.302332573, 0.146755891])
|
| | y = array(
|
| | [0.09233859, 0.18626021, 0.34556073, 0.39676747, 0.53881673])
|
| | xedges = np.linspace(0, 1, 10)
|
| | yedges = np.linspace(0, 1, 10)
|
| | H = histogram2d(x, y, (xedges, yedges))[0]
|
| | answer = array(
|
| | [[0, 0, 0, 1, 0, 0, 0, 0, 0],
|
| | [0, 0, 0, 0, 0, 0, 1, 0, 0],
|
| | [0, 0, 0, 0, 0, 0, 0, 0, 0],
|
| | [1, 0, 1, 0, 0, 0, 0, 0, 0],
|
| | [0, 1, 0, 0, 0, 0, 0, 0, 0],
|
| | [0, 0, 0, 0, 0, 0, 0, 0, 0],
|
| | [0, 0, 0, 0, 0, 0, 0, 0, 0],
|
| | [0, 0, 0, 0, 0, 0, 0, 0, 0],
|
| | [0, 0, 0, 0, 0, 0, 0, 0, 0]])
|
| | assert_array_equal(H.T, answer)
|
| | H = histogram2d(x, y, xedges)[0]
|
| | assert_array_equal(H.T, answer)
|
| | H, xedges, yedges = histogram2d(list(range(10)), list(range(10)))
|
| | assert_array_equal(H, eye(10, 10))
|
| | assert_array_equal(xedges, np.linspace(0, 9, 11))
|
| | assert_array_equal(yedges, np.linspace(0, 9, 11))
|
| |
|
| | def test_asym(self):
|
| | x = array([1, 1, 2, 3, 4, 4, 4, 5])
|
| | y = array([1, 3, 2, 0, 1, 2, 3, 4])
|
| | H, xed, yed = histogram2d(
|
| | x, y, (6, 5), range=[[0, 6], [0, 5]], density=True)
|
| | answer = array(
|
| | [[0., 0, 0, 0, 0],
|
| | [0, 1, 0, 1, 0],
|
| | [0, 0, 1, 0, 0],
|
| | [1, 0, 0, 0, 0],
|
| | [0, 1, 1, 1, 0],
|
| | [0, 0, 0, 0, 1]])
|
| | assert_array_almost_equal(H, answer/8., 3)
|
| | assert_array_equal(xed, np.linspace(0, 6, 7))
|
| | assert_array_equal(yed, np.linspace(0, 5, 6))
|
| |
|
| | def test_density(self):
|
| | x = array([1, 2, 3, 1, 2, 3, 1, 2, 3])
|
| | y = array([1, 1, 1, 2, 2, 2, 3, 3, 3])
|
| | H, xed, yed = histogram2d(
|
| | x, y, [[1, 2, 3, 5], [1, 2, 3, 5]], density=True)
|
| | answer = array([[1, 1, .5],
|
| | [1, 1, .5],
|
| | [.5, .5, .25]])/9.
|
| | assert_array_almost_equal(H, answer, 3)
|
| |
|
| | def test_all_outliers(self):
|
| | r = np.random.rand(100) + 1. + 1e6
|
| | H, xed, yed = histogram2d(r, r, (4, 5), range=([0, 1], [0, 1]))
|
| | assert_array_equal(H, 0)
|
| |
|
| | def test_empty(self):
|
| | a, edge1, edge2 = histogram2d([], [], bins=([0, 1], [0, 1]))
|
| | assert_array_max_ulp(a, array([[0.]]))
|
| |
|
| | a, edge1, edge2 = histogram2d([], [], bins=4)
|
| | assert_array_max_ulp(a, np.zeros((4, 4)))
|
| |
|
| | def test_binparameter_combination(self):
|
| | x = array(
|
| | [0, 0.09207008, 0.64575234, 0.12875982, 0.47390599,
|
| | 0.59944483, 1])
|
| | y = array(
|
| | [0, 0.14344267, 0.48988575, 0.30558665, 0.44700682,
|
| | 0.15886423, 1])
|
| | edges = (0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1)
|
| | H, xe, ye = histogram2d(x, y, (edges, 4))
|
| | answer = array(
|
| | [[2., 0., 0., 0.],
|
| | [0., 1., 0., 0.],
|
| | [0., 0., 0., 0.],
|
| | [0., 0., 0., 0.],
|
| | [0., 1., 0., 0.],
|
| | [1., 0., 0., 0.],
|
| | [0., 1., 0., 0.],
|
| | [0., 0., 0., 0.],
|
| | [0., 0., 0., 0.],
|
| | [0., 0., 0., 1.]])
|
| | assert_array_equal(H, answer)
|
| | assert_array_equal(ye, array([0., 0.25, 0.5, 0.75, 1]))
|
| | H, xe, ye = histogram2d(x, y, (4, edges))
|
| | answer = array(
|
| | [[1., 1., 0., 1., 0., 0., 0., 0., 0., 0.],
|
| | [0., 0., 0., 0., 1., 0., 0., 0., 0., 0.],
|
| | [0., 1., 0., 0., 1., 0., 0., 0., 0., 0.],
|
| | [0., 0., 0., 0., 0., 0., 0., 0., 0., 1.]])
|
| | assert_array_equal(H, answer)
|
| | assert_array_equal(xe, array([0., 0.25, 0.5, 0.75, 1]))
|
| |
|
| | def test_dispatch(self):
|
| | class ShouldDispatch:
|
| | def __array_function__(self, function, types, args, kwargs):
|
| | return types, args, kwargs
|
| |
|
| | xy = [1, 2]
|
| | s_d = ShouldDispatch()
|
| | r = histogram2d(s_d, xy)
|
| |
|
| | assert_(r == ((ShouldDispatch,), (s_d, xy), {}))
|
| | r = histogram2d(xy, s_d)
|
| | assert_(r == ((ShouldDispatch,), (xy, s_d), {}))
|
| | r = histogram2d(xy, xy, bins=s_d)
|
| | assert_(r, ((ShouldDispatch,), (xy, xy), dict(bins=s_d)))
|
| | r = histogram2d(xy, xy, bins=[s_d, 5])
|
| | assert_(r, ((ShouldDispatch,), (xy, xy), dict(bins=[s_d, 5])))
|
| | assert_raises(Exception, histogram2d, xy, xy, bins=[s_d])
|
| | r = histogram2d(xy, xy, weights=s_d)
|
| | assert_(r, ((ShouldDispatch,), (xy, xy), dict(weights=s_d)))
|
| |
|
| | @pytest.mark.parametrize(("x_len", "y_len"), [(10, 11), (20, 19)])
|
| | def test_bad_length(self, x_len, y_len):
|
| | x, y = np.ones(x_len), np.ones(y_len)
|
| | with pytest.raises(ValueError,
|
| | match='x and y must have the same length.'):
|
| | histogram2d(x, y)
|
| |
|
| |
|
| | class TestTri:
|
| | def test_dtype(self):
|
| | out = array([[1, 0, 0],
|
| | [1, 1, 0],
|
| | [1, 1, 1]])
|
| | assert_array_equal(tri(3), out)
|
| | assert_array_equal(tri(3, dtype=bool), out.astype(bool))
|
| |
|
| |
|
| | def test_tril_triu_ndim2():
|
| | for dtype in np.typecodes['AllFloat'] + np.typecodes['AllInteger']:
|
| | a = np.ones((2, 2), dtype=dtype)
|
| | b = np.tril(a)
|
| | c = np.triu(a)
|
| | assert_array_equal(b, [[1, 0], [1, 1]])
|
| | assert_array_equal(c, b.T)
|
| |
|
| | assert_equal(b.dtype, a.dtype)
|
| | assert_equal(c.dtype, a.dtype)
|
| |
|
| |
|
| | def test_tril_triu_ndim3():
|
| | for dtype in np.typecodes['AllFloat'] + np.typecodes['AllInteger']:
|
| | a = np.array([
|
| | [[1, 1], [1, 1]],
|
| | [[1, 1], [1, 0]],
|
| | [[1, 1], [0, 0]],
|
| | ], dtype=dtype)
|
| | a_tril_desired = np.array([
|
| | [[1, 0], [1, 1]],
|
| | [[1, 0], [1, 0]],
|
| | [[1, 0], [0, 0]],
|
| | ], dtype=dtype)
|
| | a_triu_desired = np.array([
|
| | [[1, 1], [0, 1]],
|
| | [[1, 1], [0, 0]],
|
| | [[1, 1], [0, 0]],
|
| | ], dtype=dtype)
|
| | a_triu_observed = np.triu(a)
|
| | a_tril_observed = np.tril(a)
|
| | assert_array_equal(a_triu_observed, a_triu_desired)
|
| | assert_array_equal(a_tril_observed, a_tril_desired)
|
| | assert_equal(a_triu_observed.dtype, a.dtype)
|
| | assert_equal(a_tril_observed.dtype, a.dtype)
|
| |
|
| |
|
| | def test_tril_triu_with_inf():
|
| |
|
| | arr = np.array([[1, 1, np.inf],
|
| | [1, 1, 1],
|
| | [np.inf, 1, 1]])
|
| | out_tril = np.array([[1, 0, 0],
|
| | [1, 1, 0],
|
| | [np.inf, 1, 1]])
|
| | out_triu = out_tril.T
|
| | assert_array_equal(np.triu(arr), out_triu)
|
| | assert_array_equal(np.tril(arr), out_tril)
|
| |
|
| |
|
| | def test_tril_triu_dtype():
|
| |
|
| |
|
| | for c in np.typecodes['All']:
|
| | if c == 'V':
|
| | continue
|
| | arr = np.zeros((3, 3), dtype=c)
|
| | assert_equal(np.triu(arr).dtype, arr.dtype)
|
| | assert_equal(np.tril(arr).dtype, arr.dtype)
|
| |
|
| |
|
| | arr = np.array([['2001-01-01T12:00', '2002-02-03T13:56'],
|
| | ['2004-01-01T12:00', '2003-01-03T13:45']],
|
| | dtype='datetime64')
|
| | assert_equal(np.triu(arr).dtype, arr.dtype)
|
| | assert_equal(np.tril(arr).dtype, arr.dtype)
|
| |
|
| | arr = np.zeros((3, 3), dtype='f4,f4')
|
| | assert_equal(np.triu(arr).dtype, arr.dtype)
|
| | assert_equal(np.tril(arr).dtype, arr.dtype)
|
| |
|
| |
|
| | def test_mask_indices():
|
| |
|
| | iu = mask_indices(3, np.triu)
|
| | a = np.arange(9).reshape(3, 3)
|
| | assert_array_equal(a[iu], array([0, 1, 2, 4, 5, 8]))
|
| |
|
| | iu1 = mask_indices(3, np.triu, 1)
|
| | assert_array_equal(a[iu1], array([1, 2, 5]))
|
| |
|
| |
|
| | def test_tril_indices():
|
| |
|
| | il1 = tril_indices(4)
|
| | il2 = tril_indices(4, k=2)
|
| | il3 = tril_indices(4, m=5)
|
| | il4 = tril_indices(4, k=2, m=5)
|
| |
|
| | a = np.array([[1, 2, 3, 4],
|
| | [5, 6, 7, 8],
|
| | [9, 10, 11, 12],
|
| | [13, 14, 15, 16]])
|
| | b = np.arange(1, 21).reshape(4, 5)
|
| |
|
| |
|
| | assert_array_equal(a[il1],
|
| | array([1, 5, 6, 9, 10, 11, 13, 14, 15, 16]))
|
| | assert_array_equal(b[il3],
|
| | array([1, 6, 7, 11, 12, 13, 16, 17, 18, 19]))
|
| |
|
| |
|
| | a[il1] = -1
|
| | assert_array_equal(a,
|
| | array([[-1, 2, 3, 4],
|
| | [-1, -1, 7, 8],
|
| | [-1, -1, -1, 12],
|
| | [-1, -1, -1, -1]]))
|
| | b[il3] = -1
|
| | assert_array_equal(b,
|
| | array([[-1, 2, 3, 4, 5],
|
| | [-1, -1, 8, 9, 10],
|
| | [-1, -1, -1, 14, 15],
|
| | [-1, -1, -1, -1, 20]]))
|
| |
|
| | a[il2] = -10
|
| | assert_array_equal(a,
|
| | array([[-10, -10, -10, 4],
|
| | [-10, -10, -10, -10],
|
| | [-10, -10, -10, -10],
|
| | [-10, -10, -10, -10]]))
|
| | b[il4] = -10
|
| | assert_array_equal(b,
|
| | array([[-10, -10, -10, 4, 5],
|
| | [-10, -10, -10, -10, 10],
|
| | [-10, -10, -10, -10, -10],
|
| | [-10, -10, -10, -10, -10]]))
|
| |
|
| |
|
| | class TestTriuIndices:
|
| | def test_triu_indices(self):
|
| | iu1 = triu_indices(4)
|
| | iu2 = triu_indices(4, k=2)
|
| | iu3 = triu_indices(4, m=5)
|
| | iu4 = triu_indices(4, k=2, m=5)
|
| |
|
| | a = np.array([[1, 2, 3, 4],
|
| | [5, 6, 7, 8],
|
| | [9, 10, 11, 12],
|
| | [13, 14, 15, 16]])
|
| | b = np.arange(1, 21).reshape(4, 5)
|
| |
|
| |
|
| | assert_array_equal(a[iu1],
|
| | array([1, 2, 3, 4, 6, 7, 8, 11, 12, 16]))
|
| | assert_array_equal(b[iu3],
|
| | array([1, 2, 3, 4, 5, 7, 8, 9,
|
| | 10, 13, 14, 15, 19, 20]))
|
| |
|
| |
|
| | a[iu1] = -1
|
| | assert_array_equal(a,
|
| | array([[-1, -1, -1, -1],
|
| | [5, -1, -1, -1],
|
| | [9, 10, -1, -1],
|
| | [13, 14, 15, -1]]))
|
| | b[iu3] = -1
|
| | assert_array_equal(b,
|
| | array([[-1, -1, -1, -1, -1],
|
| | [6, -1, -1, -1, -1],
|
| | [11, 12, -1, -1, -1],
|
| | [16, 17, 18, -1, -1]]))
|
| |
|
| |
|
| |
|
| | a[iu2] = -10
|
| | assert_array_equal(a,
|
| | array([[-1, -1, -10, -10],
|
| | [5, -1, -1, -10],
|
| | [9, 10, -1, -1],
|
| | [13, 14, 15, -1]]))
|
| | b[iu4] = -10
|
| | assert_array_equal(b,
|
| | array([[-1, -1, -10, -10, -10],
|
| | [6, -1, -1, -10, -10],
|
| | [11, 12, -1, -1, -10],
|
| | [16, 17, 18, -1, -1]]))
|
| |
|
| |
|
| | class TestTrilIndicesFrom:
|
| | def test_exceptions(self):
|
| | assert_raises(ValueError, tril_indices_from, np.ones((2,)))
|
| | assert_raises(ValueError, tril_indices_from, np.ones((2, 2, 2)))
|
| |
|
| |
|
| |
|
| | class TestTriuIndicesFrom:
|
| | def test_exceptions(self):
|
| | assert_raises(ValueError, triu_indices_from, np.ones((2,)))
|
| | assert_raises(ValueError, triu_indices_from, np.ones((2, 2, 2)))
|
| |
|
| |
|
| |
|
| | class TestVander:
|
| | def test_basic(self):
|
| | c = np.array([0, 1, -2, 3])
|
| | v = vander(c)
|
| | powers = np.array([[0, 0, 0, 0, 1],
|
| | [1, 1, 1, 1, 1],
|
| | [16, -8, 4, -2, 1],
|
| | [81, 27, 9, 3, 1]])
|
| |
|
| | assert_array_equal(v, powers[:, 1:])
|
| |
|
| | m = powers.shape[1]
|
| | for n in range(6):
|
| | v = vander(c, N=n)
|
| | assert_array_equal(v, powers[:, m-n:m])
|
| |
|
| | def test_dtypes(self):
|
| | c = array([11, -12, 13], dtype=np.int8)
|
| | v = vander(c)
|
| | expected = np.array([[121, 11, 1],
|
| | [144, -12, 1],
|
| | [169, 13, 1]])
|
| | assert_array_equal(v, expected)
|
| |
|
| | c = array([1.0+1j, 1.0-1j])
|
| | v = vander(c, N=3)
|
| | expected = np.array([[2j, 1+1j, 1],
|
| | [-2j, 1-1j, 1]])
|
| |
|
| |
|
| |
|
| | assert_array_equal(v, expected)
|
| |
|