| | """ |
| | array.pxd |
| | |
| | Cython interface to Python's array.array module. |
| | |
| | * 1D contiguous data view |
| | * tools for fast array creation, maximum C-speed and handiness |
| | * suitable as allround light weight auto-array within Cython code too |
| | |
| | Usage: |
| | |
| | >>> cimport array |
| | |
| | Usage through Cython buffer interface (Py2.3+): |
| | |
| | >>> def f(arg1, unsigned i, double dx) |
| | ... array.array[double] a = arg1 |
| | ... a[i] += dx |
| | |
| | Fast C-level new_array(_zeros), resize_array, copy_array, Py_SIZE(obj), |
| | zero_array |
| | |
| | cdef array.array[double] k = array.copy(d) |
| | cdef array.array[double] n = array.array(d, Py_SIZE(d) * 2 ) |
| | cdef array.array[double] m = array.zeros_like(FLOAT_TEMPLATE) |
| | array.resize(f, 200000) |
| | |
| | Zero overhead with naked data pointer views by union: |
| | _f, _d, _i, _c, _u, ... |
| | => Original C array speed + Python dynamic memory management |
| | |
| | cdef array.array a = inarray |
| | if |
| | a._d[2] += 0.66 # use as double array without extra casting |
| | |
| | float *subview = vector._f + 10 # starting from 10th element |
| | unsigned char *subview_buffer = vector._B + 4 |
| | |
| | Suitable as lightweight arrays intra Cython without speed penalty. |
| | Replacement for C stack/malloc arrays; no trouble with refcounting, |
| | mem.leaks; seamless Python compatibility, buffer() optional |
| | |
| | |
| | last changes: 2009-05-15 rk |
| | : 2009-12-06 bp |
| | : 2012-05-02 andreasvc |
| | : (see revision control) |
| | """ |
| | from libc.string cimport strcat, strncat, \ |
| | memset, memchr, memcmp, memcpy, memmove |
| |
|
| | from cpython.object cimport Py_SIZE |
| | from cpython.ref cimport PyTypeObject, Py_TYPE |
| | from cpython.exc cimport PyErr_BadArgument |
| | from cpython.mem cimport PyObject_Malloc, PyObject_Free |
| |
|
| | cdef extern from *: |
| | ctypedef class array.array [object arrayobject] |
| | ctypedef object GETF(array a, Py_ssize_t ix) |
| | ctypedef object SETF(array a, Py_ssize_t ix, object o) |
| | ctypedef struct arraydescr: |
| | char typecode |
| | int itemsize |
| | GETF getitem |
| | SETF setitem |
| |
|
| | ctypedef union __data_union: |
| | |
| | float* as_floats |
| | double* as_doubles |
| | int* as_ints |
| | unsigned int *as_uints |
| | unsigned char *as_uchars |
| | signed char *as_schars |
| | char *as_chars |
| | unsigned long *as_ulongs |
| | long *as_longs |
| | unsigned long long *as_ulonglongs |
| | long long *as_longlongs |
| | short *as_shorts |
| | unsigned short *as_ushorts |
| | Py_UNICODE *as_pyunicodes |
| | void *as_voidptr |
| |
|
| | ctypedef class array.array [object arrayobject]: |
| | cdef __cythonbufferdefaults__ = {'ndim' : 1, 'mode':'c'} |
| |
|
| | cdef: |
| | Py_ssize_t ob_size |
| | arraydescr* ob_descr |
| | __data_union data |
| |
|
| | def __getbuffer__(self, Py_buffer* info, int flags): |
| | |
| | |
| | |
| | |
| | item_count = Py_SIZE(self) |
| |
|
| | info.suboffsets = NULL |
| | info.buf = self.data.as_chars |
| | info.readonly = 0 |
| | info.ndim = 1 |
| | info.itemsize = self.ob_descr.itemsize |
| | info.len = info.itemsize * item_count |
| |
|
| | info.shape = <Py_ssize_t*> PyObject_Malloc(sizeof(Py_ssize_t) + 2) |
| | if not info.shape: |
| | raise MemoryError() |
| | info.shape[0] = item_count |
| | info.strides = &info.itemsize |
| |
|
| | info.format = <char*> (info.shape + 1) |
| | info.format[0] = self.ob_descr.typecode |
| | info.format[1] = 0 |
| | info.obj = self |
| |
|
| | def __releasebuffer__(self, Py_buffer* info): |
| | PyObject_Free(info.shape) |
| |
|
| | array newarrayobject(PyTypeObject* type, Py_ssize_t size, arraydescr *descr) |
| |
|
| | |
| | |
| | int resize(array self, Py_ssize_t n) except -1 |
| | |
| | int resize_smart(array self, Py_ssize_t n) except -1 |
| |
|
| |
|
| | cdef inline array clone(array template, Py_ssize_t length, bint zero): |
| | """ fast creation of a new array, given a template array. |
| | type will be same as template. |
| | if zero is true, new array will be initialized with zeroes.""" |
| | cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr) |
| | if zero and op is not None: |
| | memset(op.data.as_chars, 0, length * op.ob_descr.itemsize) |
| | return op |
| |
|
| | cdef inline array copy(array self): |
| | """ make a copy of an array. """ |
| | cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr) |
| | memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize) |
| | return op |
| |
|
| | cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1: |
| | """ efficient appending of new stuff of same type |
| | (e.g. of same array type) |
| | n: number of elements (not number of bytes!) """ |
| | cdef Py_ssize_t itemsize = self.ob_descr.itemsize |
| | cdef Py_ssize_t origsize = Py_SIZE(self) |
| | resize_smart(self, origsize + n) |
| | memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize) |
| | return 0 |
| |
|
| | cdef inline int extend(array self, array other) except -1: |
| | """ extend array with data from another array; types must match. """ |
| | if self.ob_descr.typecode != other.ob_descr.typecode: |
| | PyErr_BadArgument() |
| | return extend_buffer(self, other.data.as_chars, Py_SIZE(other)) |
| |
|
| | cdef inline void zero(array self): |
| | """ set all elements of array to zero. """ |
| | memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize) |
| |
|