best val_rmse 0.0000

config.json

@@ -1,5 +1,5 @@
 {
-  "best_val_loss": 0.026249421760439873,
+  "best_val_loss": 0.0,
   "comet_ai_key": null,
   "context_observations": {
     "add_rem": true,
@@ -12,12 +12,13 @@
     "obs_type": "observations_pk_peak_halflife",
     "past_time_ratio": 0.1
   },
+  "debug_test": false,
   "dosing": {
     "dose": 1.0,
     "route": "oral",
     "time": 0.0
   },
-  "experiment_dir": "/work/ojedamarin/Projects/Pharma/Results/comet/node_pk_compartments/1211b9517a6d4b3cb2593b2fed1c3737",
+  "experiment_dir": "/work/ojedamarin/Projects/Pharma/Results/comet/node_pk_compartments/40a0407247cf4a4ba5af1dc855f2dd1e",
   "experiment_indentifier": null,
   "experiment_name": "node_pk_compartments",
   "hf_model_card_path": [
@@ -131,8 +132,9 @@
   },
   "mix_data": {
     "evaluate_prediction_steps_past": 5,
+    "keep_tempfile": false,
     "log_transform": false,
-    "n_of_databatches": 3,
+    "n_of_databatches": 10,
     "n_of_target_individuals": 1,
     "normalize_by_max": true,
     "normalize_time": true,
@@ -143,9 +145,15 @@
     ],
     "pretraining_epochs": 4800,
     "pretraining_protocol": "none",
+    "recreate_tempfile": false,
     "return_split_versions": true,
     "split_seed": 42,
     "split_strategy": "study",
+    "store_in_tempfile": false,
+    "tempfile_path": [
+      "preprocessed",
+      "simulated_ou_as_rates.tr"
+    ],
     "test_protocol": "simulated",
     "test_size": 5,
     "train_size": 100,
@@ -189,9 +197,9 @@
     "use_kl_s": true,
     "zi_latent_dim": 256
   },
-  "run_index": 0,
+  "run_index": 2,
   "tags": [
-    "np-pk",
+    "NPPK",
     "N-0"
   ],
   "target_observations": {
@@ -215,8 +223,8 @@
     "epochs": 6000,
     "eps": 1e-08,
     "gradient_clip_val": 1.0,
-    "learning_rate": 0.0001,
-    "log_image_every_epoch": 30,
+    "learning_rate": 1e-05,
+    "log_image_every_epoch": 25,
     "log_interval": 1,
     "log_vcp": false,
     "num_batch_plot": 1,

pytorch_model.bin

@@ -1,3 +1,3 @@
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+oid sha256:11ada6df72dd2808044c6db59e08dc5cafc8af7c84140ee1a69980fed6bec540
 size 37691910