File size: 9,415 Bytes
59b15f5 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 |
"""
Train Multiple Model Variants for Milk Spoilage Classification
This script:
1. Loads training data from CSV files
2. Trains 10 RandomForest model variants with different feature subsets
3. Exports all model artifacts (*.joblib, variants_config.json)
"""
import json
import pandas as pd
import numpy as np
from sklearn.ensemble import RandomForestClassifier
from sklearn.metrics import accuracy_score, classification_report
import joblib
import os
from pathlib import Path
# Define all model variants with feature subsets
MODEL_VARIANTS = {
'baseline': {
'name': 'Baseline (All Features)',
'description': 'Uses all 6 microbiological measurements across all time points',
'features': ['SPC_D7', 'SPC_D14', 'SPC_D21', 'TGN_D7', 'TGN_D14', 'TGN_D21']
},
'scenario_1_days14_21': {
'name': 'Days 14 & 21',
'description': 'Uses measurements from days 14 and 21 only',
'features': ['SPC_D14', 'SPC_D21', 'TGN_D14', 'TGN_D21']
},
'scenario_2_days7_14': {
'name': 'Days 7 & 14',
'description': 'Uses measurements from days 7 and 14 only',
'features': ['SPC_D7', 'SPC_D14', 'TGN_D7', 'TGN_D14']
},
'scenario_3_day21': {
'name': 'Day 21 Only',
'description': 'Uses only day 21 measurements',
'features': ['SPC_D21', 'TGN_D21']
},
'scenario_4_day14': {
'name': 'Day 14 Only',
'description': 'Uses only day 14 measurements',
'features': ['SPC_D14', 'TGN_D14']
},
'scenario_5_day7': {
'name': 'Day 7 Only',
'description': 'Uses only day 7 measurements',
'features': ['SPC_D7', 'TGN_D7']
},
'scenario_6_spc_all': {
'name': 'SPC Only (All Days)',
'description': 'Uses only Standard Plate Count measurements across all days',
'features': ['SPC_D7', 'SPC_D14', 'SPC_D21']
},
'scenario_7_tgn_all': {
'name': 'TGN Only (All Days)',
'description': 'Uses only Total Gram-Negative measurements across all days',
'features': ['TGN_D7', 'TGN_D14', 'TGN_D21']
},
'scenario_8_spc_7_14': {
'name': 'SPC Days 7 & 14',
'description': 'Uses only SPC measurements from days 7 and 14',
'features': ['SPC_D7', 'SPC_D14']
},
'scenario_9_tgn_7_14': {
'name': 'TGN Days 7 & 14',
'description': 'Uses only TGN measurements from days 7 and 14',
'features': ['TGN_D7', 'TGN_D14']
}
}
# Feature descriptions (constant across all variants)
FEATURE_DESCRIPTIONS = {
"SPC_D7": "Standard Plate Count at Day 7 (log CFU/mL)",
"SPC_D14": "Standard Plate Count at Day 14 (log CFU/mL)",
"SPC_D21": "Standard Plate Count at Day 21 (log CFU/mL)",
"TGN_D7": "Total Gram-Negative count at Day 7 (log CFU/mL)",
"TGN_D14": "Total Gram-Negative count at Day 14 (log CFU/mL)",
"TGN_D21": "Total Gram-Negative count at Day 21 (log CFU/mL)"
}
# Class descriptions (constant across all variants)
CLASS_DESCRIPTIONS = {
"PPC": "Post-Pasteurization Contamination",
"no spoilage": "No spoilage detected",
"spore spoilage": "Spore-forming bacteria spoilage"
}
def load_data():
"""Load training and test data from CSV files."""
print("Loading data...")
# Adjust path based on where script is run from
data_dir = Path(__file__).parent.parent / "data"
if not data_dir.exists():
# Try alternate path
data_dir = Path("data")
train_df = pd.read_csv(data_dir / "train_df.csv")
test_df = pd.read_csv(data_dir / "test_df.csv")
print(f"✓ Loaded {len(train_df)} training samples and {len(test_df)} test samples")
return train_df, test_df
def train_model(X_train, y_train):
"""Train RandomForest model with best hyperparameters from notebook."""
# Best hyperparameters from GridSearchCV in original notebook
model = RandomForestClassifier(
n_estimators=100,
max_depth=None,
min_samples_split=5,
min_samples_leaf=1,
random_state=42
)
model.fit(X_train, y_train)
return model
def evaluate_model(model, X_test, y_test):
"""Evaluate model performance on test set."""
y_pred = model.predict(X_test)
accuracy = accuracy_score(y_test, y_pred)
report = classification_report(y_test, y_pred, output_dict=True)
return accuracy, report
def train_all_variants(train_df, test_df, output_dir="model/variants"):
"""Train all model variants and save artifacts."""
# Create output directory
output_path = Path(output_dir)
output_path.mkdir(parents=True, exist_ok=True)
target_col = 'spoilagetype'
variants_metadata = {}
print("\n" + "=" * 70)
print("Training All Model Variants")
print("=" * 70)
for variant_id, variant_config in MODEL_VARIANTS.items():
print(f"\n{variant_id}")
print(f" Name: {variant_config['name']}")
print(f" Features: {', '.join(variant_config['features'])}")
# Prepare data for this variant
features = variant_config['features']
train_set = train_df[features + [target_col]].dropna()
test_set = test_df[features + [target_col]].dropna()
X_train = train_set[features]
y_train = train_set[target_col]
X_test = test_set[features]
y_test = test_set[target_col]
print(f" Training samples: {len(X_train)}, Test samples: {len(X_test)}")
# Train model
model = train_model(X_train, y_train)
# Evaluate
test_accuracy, test_report = evaluate_model(model, X_test, y_test)
train_accuracy = accuracy_score(y_train, model.predict(X_train))
print(f" Train accuracy: {train_accuracy:.4f}")
print(f" Test accuracy: {test_accuracy:.4f}")
# Save model
model_path = output_path / f"{variant_id}.joblib"
joblib.dump(model, model_path)
print(f" ✓ Saved to {model_path}")
# Store metadata
variants_metadata[variant_id] = {
'name': variant_config['name'],
'description': variant_config['description'],
'features': features,
'train_accuracy': float(train_accuracy),
'test_accuracy': float(test_accuracy),
'n_train_samples': len(X_train),
'n_test_samples': len(X_test),
'classes': list(model.classes_),
'class_metrics': {
cls: {
'precision': float(test_report[cls]['precision']),
'recall': float(test_report[cls]['recall']),
'f1-score': float(test_report[cls]['f1-score']),
'support': int(test_report[cls]['support'])
}
for cls in model.classes_
}
}
return variants_metadata
def create_variants_config(variants_metadata, output_dir="model/variants"):
"""Create comprehensive config file for all variants."""
config = {
'model_type': 'RandomForestClassifier',
'framework': 'sklearn',
'task': 'classification',
'hyperparameters': {
'n_estimators': 100,
'max_depth': None,
'min_samples_split': 5,
'min_samples_leaf': 1,
'random_state': 42
},
'feature_descriptions': FEATURE_DESCRIPTIONS,
'class_descriptions': CLASS_DESCRIPTIONS,
'variants': variants_metadata
}
config_path = Path(output_dir) / "variants_config.json"
with open(config_path, 'w') as f:
json.dump(config, f, indent=2)
print(f"\n✓ Variants config saved to {config_path}")
return config
def print_summary(variants_metadata):
"""Print summary of all trained variants."""
print("\n" + "=" * 70)
print("Training Summary")
print("=" * 70)
# Sort by test accuracy
sorted_variants = sorted(
variants_metadata.items(),
key=lambda x: x[1]['test_accuracy'],
reverse=True
)
print(f"\n{'Rank':<6} {'Variant':<30} {'Test Acc':<12} {'Features'}")
print("-" * 70)
for rank, (variant_id, metadata) in enumerate(sorted_variants, 1):
medal = ['🥇', '🥈', '🥉'][rank - 1] if rank <= 3 else ' '
features_str = ', '.join(metadata['features'][:2]) + (
'...' if len(metadata['features']) > 2 else ''
)
print(f"{medal} {rank:<4} {variant_id:<30} {metadata['test_accuracy']:.4f} {features_str}")
print("\n" + "=" * 70)
def main():
"""Main function to train all model variants."""
print("=" * 70)
print("Milk Spoilage Classification - Multi-Variant Training")
print("=" * 70)
# Load data
train_df, test_df = load_data()
# Train all variants
variants_metadata = train_all_variants(train_df, test_df)
# Create config
create_variants_config(variants_metadata)
# Print summary
print_summary(variants_metadata)
print("\n✓ All model variants trained successfully!")
print(f"\nGenerated files:")
print(f" - model/variants/*.joblib (10 model files)")
print(f" - model/variants/variants_config.json")
print(f"\nNext step: Update API to load all variants")
if __name__ == "__main__":
main()
|