#!/usr/bin/env python # coding: utf-8 # # Import packages & functions # In[1]: import os import sys import json import argparse import numpy as np import math from einops import rearrange import time import random import string import h5py from tqdm import tqdm import webdataset as wds import matplotlib.pyplot as plt import torch import torch.nn as nn from torchvision import transforms from accelerate import Accelerator # SDXL unCLIP requires code from https://github.com/Stability-AI/generative-models/tree/main sys.path.append('generative_models/') import sgm from generative_models.sgm.modules.encoders.modules import FrozenOpenCLIPImageEmbedder # bigG embedder # tf32 data type is faster than standard float32 torch.backends.cuda.matmul.allow_tf32 = True # custom functions # import utils # In[34]: import torch import torch.nn.functional as F def classPrecision(logits, y_true, top=1): """ Calculate the precision of the top-n predictions. Parameters: logits (torch.Tensor): The output logits from the model (shape: [batch_size, num_classes]). y_true (torch.Tensor): The ground truth labels (shape: [batch_size]). top (int): The number of top predictions to consider. Returns: float: The precision percentage of the top-n predictions. """ # Apply softmax to get probabilities probs = F.softmax(logits, dim=1) # Get the top-n predictions top_n_preds = torch.topk(probs, top, dim=1).indices # Check if y_true is in top-n predictions correct = top_n_preds.eq(y_true.view(-1, 1).expand_as(top_n_preds)) # Calculate precision precision = correct.sum().item() / y_true.size(0) return precision * 100 # Example usage: logits = torch.randn(8, 41) # Example logits tensor y_true = torch.randint(0, 41, (8,)) # Example ground truth labels top_n_precision = classPrecision(logits, y_true, top=1) print(f"Top-1 Precision: {top_n_precision:.2f}%") # In[2]: ### Multi-GPU config ### local_rank = os.getenv('RANK') if local_rank is None: local_rank = 0 else: local_rank = int(local_rank) print("LOCAL RANK ", local_rank) data_type = torch.float16 # change depending on your mixed_precision num_devices = torch.cuda.device_count() if num_devices==0: num_devices = 1 # First use "accelerate config" in terminal and setup using deepspeed stage 2 with CPU offloading! accelerator = Accelerator(split_batches=False, mixed_precision="fp16") if utils.is_interactive(): # set batch size here if using interactive notebook instead of submitting job global_batch_size = batch_size = 8 else: global_batch_size = os.environ["GLOBAL_BATCH_SIZE"] batch_size = int(os.environ["GLOBAL_BATCH_SIZE"]) // num_devices # In[3]: print("PID of this process =",os.getpid()) device = accelerator.device print("device:",device) world_size = accelerator.state.num_processes distributed = not accelerator.state.distributed_type == 'NO' num_devices = torch.cuda.device_count() if num_devices==0 or not distributed: num_devices = 1 num_workers = num_devices print(accelerator.state) print("distributed =",distributed, "num_devices =", num_devices, "local rank =", local_rank, "world size =", world_size, "data_type =", data_type) print = accelerator.print # only print if local_rank=0 # # Configurations # In[4]: # if running this interactively, can specify jupyter_args here for argparser to use if utils.is_interactive(): model_name = "testing2" print("model_name:", model_name) # global_batch_size and batch_size should already be defined in the 2nd cell block jupyter_args = f"--data_path=/weka/proj-medarc/shared/mindeyev2_dataset \ --cache_dir=/weka/proj-medarc/shared/cache \ --model_name={model_name} \ --no-multi_subject --subj=1 --batch_size={batch_size} --num_sessions=40 \ --hidden_dim=1024 --clip_scale=1. \ --no-blurry_recon --blur_scale=.5 \ --use_prior --prior_scale=30 \ --n_blocks=4 --max_lr=3e-5 --mixup_pct=.33 --num_epochs=150 --no-use_image_aug \ --ckpt_interval=999 --no-ckpt_saving --wandb_log" # --multisubject_ckpt=../train_logs/multisubject_subj01_1024_24bs_nolow print(jupyter_args) jupyter_args = jupyter_args.split() from IPython.display import clear_output # function to clear print outputs in cell get_ipython().run_line_magic('load_ext', 'autoreload') # this allows you to change functions in models.py or utils.py and have this notebook automatically update with your revisions get_ipython().run_line_magic('autoreload', '2') # In[5]: parser = argparse.ArgumentParser(description="Model Training Configuration") parser.add_argument( "--model_name", type=str, default="testing2", help="name of model, used for ckpt saving and wandb logging (if enabled)", ) parser.add_argument( "--data_path", type=str, default=os.getcwd(), help="Path to where NSD data is stored / where to download it to", ) parser.add_argument( "--cache_dir", type=str, default=os.getcwd(), help="Path to where misc. files downloaded from huggingface are stored. Defaults to current src directory.", ) parser.add_argument( "--subj",type=int, default=1, choices=[1,2,3,4,5,6,7,8], help="Validate on which subject?", ) parser.add_argument( "--multisubject_ckpt", type=str, default=None, help="Path to pre-trained multisubject model to finetune a single subject from. multisubject must be False.", ) parser.add_argument( "--num_sessions", type=int, default=1, help="Number of training sessions to include", ) parser.add_argument( "--use_prior",action=argparse.BooleanOptionalAction,default=True, help="whether to train diffusion prior (True) or just rely on retrieval part of the pipeline (False)", ) parser.add_argument( "--batch_size", type=int, default=16, help="Batch size can be increased by 10x if only training retreival submodule and not diffusion prior", ) parser.add_argument( "--wandb_log",action=argparse.BooleanOptionalAction,default=False, help="whether to log to wandb", ) parser.add_argument( "--wandb_project",type=str,default="stability", help="wandb project name", ) parser.add_argument( "--mixup_pct",type=float,default=.33, help="proportion of way through training when to switch from BiMixCo to SoftCLIP", ) parser.add_argument( "--blurry_recon",action=argparse.BooleanOptionalAction,default=True, help="whether to output blurry reconstructions", ) parser.add_argument( "--blur_scale",type=float,default=.5, help="multiply loss from blurry recons by this number", ) parser.add_argument( "--clip_scale",type=float,default=1., help="multiply contrastive loss by this number", ) parser.add_argument( "--prior_scale",type=float,default=30, help="multiply diffusion prior loss by this", ) parser.add_argument( "--use_image_aug",action=argparse.BooleanOptionalAction,default=False, help="whether to use image augmentation", ) parser.add_argument( "--num_epochs",type=int,default=150, help="number of epochs of training", ) parser.add_argument( "--multi_subject",action=argparse.BooleanOptionalAction,default=False, ) parser.add_argument( "--new_test",action=argparse.BooleanOptionalAction,default=True, ) parser.add_argument( "--n_blocks",type=int,default=4, ) parser.add_argument( "--hidden_dim",type=int,default=1024, ) parser.add_argument( "--lr_scheduler_type",type=str,default='cycle',choices=['cycle','linear'], ) parser.add_argument( "--ckpt_saving",action=argparse.BooleanOptionalAction,default=True, ) parser.add_argument( "--ckpt_interval",type=int,default=5, help="save backup ckpt and reconstruct every x epochs", ) parser.add_argument( "--seed",type=int,default=42, ) parser.add_argument( "--max_lr",type=float,default=3e-5, ) if utils.is_interactive(): args = parser.parse_args(jupyter_args) else: args = parser.parse_args() # create global variables without the args prefix for attribute_name in vars(args).keys(): globals()[attribute_name] = getattr(args, attribute_name) # seed all random functions utils.seed_everything(seed) outdir = os.path.abspath(f'../train_logs/{model_name}') if not os.path.exists(outdir) and ckpt_saving: os.makedirs(outdir,exist_ok=True) if use_image_aug or blurry_recon: import kornia from kornia.augmentation.container import AugmentationSequential if use_image_aug: img_augment = AugmentationSequential( kornia.augmentation.ColorJitter(brightness=0.4, contrast=0.4, saturation=0.4, hue=0.1, p=0.3), same_on_batch=False, data_keys=["input"], ) if multi_subject: subj_list = np.arange(1,9) subj_list = subj_list[subj_list != subj] else: subj_list = [subj] print("subj_list", subj_list, "num_sessions", num_sessions) # In[6]: max_lr # # Prep data, models, and dataloaders # ### Creating wds dataloader, preload betas and all 73k possible images # In[7]: def my_split_by_node(urls): return urls num_voxels_list = [] if multi_subject: nsessions_allsubj=np.array([40, 40, 32, 30, 40, 32, 40, 30]) num_samples_per_epoch = (750*40) // num_devices else: num_samples_per_epoch = (750*num_sessions) // num_devices print("dividing batch size by subj_list, which will then be concatenated across subj during training...") batch_size = batch_size // len(subj_list) num_iterations_per_epoch = num_samples_per_epoch // (batch_size*len(subj_list)) print("batch_size =", batch_size, "num_iterations_per_epoch =",num_iterations_per_epoch, "num_samples_per_epoch =",num_samples_per_epoch) # In[8]: train_data = {} train_dl = {} num_voxels = {} voxels = {} for s in subj_list: print(f"Training with {num_sessions} sessions") if multi_subject: train_url = f"{data_path}/wds/subj0{s}/train/" + "{0.." + f"{nsessions_allsubj[s-1]-1}" + "}.tar" else: train_url = f"{data_path}/wds/subj0{s}/train/" + "{0.." + f"{num_sessions-1}" + "}.tar" print(train_url) train_data[f'subj0{s}'] = wds.WebDataset(train_url,resampled=True,nodesplitter=my_split_by_node)\ .shuffle(750, initial=1500, rng=random.Random(42))\ .decode("torch")\ .rename(behav="behav.npy", past_behav="past_behav.npy", future_behav="future_behav.npy", olds_behav="olds_behav.npy")\ .to_tuple(*["behav", "past_behav", "future_behav", "olds_behav"]) train_dl[f'subj0{s}'] = torch.utils.data.DataLoader(train_data[f'subj0{s}'], batch_size=batch_size, shuffle=False, drop_last=False, pin_memory=True) f = h5py.File(f'{data_path}/betas_all_subj0{s}_fp32_renorm.hdf5', 'r') betas = f['betas'][:] betas = torch.Tensor(betas).to("cpu").to(data_type) num_voxels_list.append(betas[0].shape[-1]) num_voxels[f'subj0{s}'] = betas[0].shape[-1] voxels[f'subj0{s}'] = betas print(f"num_voxels for subj0{s}: {num_voxels[f'subj0{s}']}") print("Loaded all subj train dls and betas!\n") # Validate only on one subject if multi_subject: subj = subj_list[0] # cant validate on the actual held out person so picking first in subj_list if not new_test: # using old test set from before full dataset released (used in original MindEye paper) if subj==3: num_test=2113 elif subj==4: num_test=1985 elif subj==6: num_test=2113 elif subj==8: num_test=1985 else: num_test=2770 test_url = f"{data_path}/wds/subj0{subj}/test/" + "0.tar" elif new_test: # using larger test set from after full dataset released if subj==3: num_test=2371 elif subj==4: num_test=2188 elif subj==6: num_test=2371 elif subj==8: num_test=2188 else: num_test=3000 test_url = f"{data_path}/wds/subj0{subj}/new_test/" + "0.tar" print(test_url) test_data = wds.WebDataset(test_url,resampled=False,nodesplitter=my_split_by_node)\ .shuffle(750, initial=1500, rng=random.Random(42))\ .decode("torch")\ .rename(behav="behav.npy", past_behav="past_behav.npy", future_behav="future_behav.npy", olds_behav="olds_behav.npy")\ .to_tuple(*["behav", "past_behav", "future_behav", "olds_behav"]) test_dl = torch.utils.data.DataLoader(test_data, batch_size=num_test, shuffle=False, drop_last=True, pin_memory=True) print(f"Loaded test dl for subj{subj}!\n") # In[9]: # Load 73k NSD images f = h5py.File(f'{data_path}/coco_images_224_float16.hdf5', 'r') images = f['images'] print("Loaded all 73k possible NSD images to cpu!", images.shape) # ## Load models # ### CLIP image embeddings model # In[10]: clip_img_embedder = FrozenOpenCLIPImageEmbedder( arch="ViT-bigG-14", version="laion2b_s39b_b160k", output_tokens=True, only_tokens=True, ) clip_img_embedder.to(device) clip_seq_dim = 256 clip_emb_dim = 1664 # ### SD VAE # In[11]: if blurry_recon: from diffusers import AutoencoderKL autoenc = AutoencoderKL( down_block_types=['DownEncoderBlock2D', 'DownEncoderBlock2D', 'DownEncoderBlock2D', 'DownEncoderBlock2D'], up_block_types=['UpDecoderBlock2D', 'UpDecoderBlock2D', 'UpDecoderBlock2D', 'UpDecoderBlock2D'], block_out_channels=[128, 256, 512, 512], layers_per_block=2, sample_size=256, ) ckpt = torch.load(f'{cache_dir}/sd_image_var_autoenc.pth') autoenc.load_state_dict(ckpt) autoenc.eval() autoenc.requires_grad_(False) autoenc.to(device) utils.count_params(autoenc) from autoencoder.convnext import ConvnextXL cnx = ConvnextXL(f'{cache_dir}/convnext_xlarge_alpha0.75_fullckpt.pth') cnx.requires_grad_(False) cnx.eval() cnx.to(device) mean = torch.tensor([0.485, 0.456, 0.406]).to(device).reshape(1,3,1,1) std = torch.tensor([0.228, 0.224, 0.225]).to(device).reshape(1,3,1,1) blur_augs = AugmentationSequential( kornia.augmentation.ColorJitter(brightness=0.4, contrast=0.4, saturation=0.2, hue=0.1, p=0.8), kornia.augmentation.RandomGrayscale(p=0.1), kornia.augmentation.RandomSolarize(p=0.1), kornia.augmentation.RandomResizedCrop((224,224), scale=(.9,.9), ratio=(1,1), p=1.0), data_keys=["input"], ) # ### MindEye modules # In[12]: class MindEyeModule(nn.Module): def __init__(self): super(MindEyeModule, self).__init__() def forward(self, x): return x model = MindEyeModule() model # In[13]: class RidgeRegression(torch.nn.Module): # make sure to add weight_decay when initializing optimizer to enable regularization def __init__(self, input_sizes, out_features): super(RidgeRegression, self).__init__() self.out_features = out_features self.linears = torch.nn.ModuleList([ torch.nn.Linear(input_size, out_features) for input_size in input_sizes ]) def forward(self, x, subj_idx): out = self.linears[subj_idx](x[:,0]).unsqueeze(1) return out class IndividRidgeRegression(torch.nn.Module): def __init__(self, input_size, out_features): super(IndividRidgeRegression, self).__init__() self.out_features = out_features self.linear = torch.nn.Linear(input_size, out_features) def forward(self, x): out = self.linear(x) return out model.ridge = RidgeRegression(num_voxels_list, out_features=hidden_dim) utils.count_params(model.ridge) utils.count_params(model) # test on subject 1 with fake data b = torch.randn((2,1,num_voxels_list[0])) print(b.shape, model.ridge(b,0).shape) # In[14]: from models import BrainNetwork model.backbone = BrainNetwork(h=hidden_dim, in_dim=hidden_dim, seq_len=1, n_blocks=n_blocks, clip_size=clip_emb_dim, out_dim=clip_emb_dim*clip_seq_dim, blurry_recon=blurry_recon, clip_scale=clip_scale) utils.count_params(model.backbone) utils.count_params(model) # test that the model works on some fake data b = torch.randn((2,1,hidden_dim)) print("b.shape",b.shape) backbone_, clip_, blur_ = model.backbone(b) print(backbone_.shape, clip_.shape, blur_[0].shape, blur_[1].shape) # ### Load semantic clusters # In[15]: path_semantic_names = "/weka/proj-medarc/shared/mindeyev2_dataset/semantic_cluster_names.npy" path_semantic_cluster = "/weka/proj-medarc/shared/mindeyev2_dataset/COCO_73k_semantic_cluster.npy" semantic_cluster_names = np.load(path_semantic_names) semantic_cluster = np.load(path_semantic_cluster) possible_semantic_clusters = np.unique(semantic_cluster) # one-hot encode semantic clusters # move possible_semantic_clusters to numbers and create a dictionary semantic_cluster_dict = {cluster: i for i, cluster in enumerate(possible_semantic_clusters)} semantic_cluster_onehot = torch.zeros((len(semantic_cluster), len(possible_semantic_clusters))) for i, cluster in enumerate(semantic_cluster): semantic_cluster_onehot[i, semantic_cluster_dict[cluster]] = 1 print("semantic_cluster_onehot.shape", semantic_cluster_onehot.shape) num_seman_clusters = len(np.unique(semantic_cluster)) print("num_seman_clusters", num_seman_clusters) # ### Adding the ridge regression to the class # In[16]: # if use_prior: # from models import * # # setup diffusion prior network # out_dim = clip_emb_dim # depth = 6 # dim_head = 52 # heads = clip_emb_dim//52 # heads * dim_head = clip_emb_dim # timesteps = 100 # prior_network = PriorNetwork( # dim=out_dim, # depth=depth, # dim_head=dim_head, # heads=heads, # causal=False, # num_tokens = clip_seq_dim, # learned_query_mode="pos_emb" # ) # model.diffusion_prior = BrainDiffusionPrior( # net=prior_network, # image_embed_dim=out_dim, # condition_on_text_encodings=False, # timesteps=timesteps, # cond_drop_prob=0.2, # image_embed_scale=None, # ) # utils.count_params(model.diffusion_prior) # utils.count_params(model) model.RRClassifier = IndividRidgeRegression(clip_emb_dim*clip_seq_dim, out_features=num_seman_clusters) utils.count_params(model.RRClassifier) utils.count_params(model) # ### Setup optimizer / lr / ckpt saving # In[17]: no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] opt_grouped_parameters = [ {'params': [p for n, p in model.ridge.named_parameters()], 'weight_decay': 1e-2}, {'params': [p for n, p in model.backbone.named_parameters() if not any(nd in n for nd in no_decay)], 'weight_decay': 1e-2}, {'params': [p for n, p in model.backbone.named_parameters() if any(nd in n for nd in no_decay)], 'weight_decay': 0.0}, ] # if use_prior: # opt_grouped_parameters.extend([ # {'params': [p for n, p in model.diffusion_prior.named_parameters() if not any(nd in n for nd in no_decay)], 'weight_decay': 1e-2}, # {'params': [p for n, p in model.diffusion_prior.named_parameters() if any(nd in n for nd in no_decay)], 'weight_decay': 0.0} # ]) opt_grouped_parameters.extend([ {'params': [p for n, p in model.RRClassifier.named_parameters()], 'weight_decay': 1e-2}, ]) optimizer = torch.optim.AdamW(opt_grouped_parameters, lr=max_lr) if lr_scheduler_type == 'linear': lr_scheduler = torch.optim.lr_scheduler.LinearLR( optimizer, total_iters=int(np.floor(num_epochs*num_iterations_per_epoch)), last_epoch=-1 ) elif lr_scheduler_type == 'cycle': total_steps=int(np.floor(num_epochs*num_iterations_per_epoch)) print("total_steps", total_steps) lr_scheduler = torch.optim.lr_scheduler.OneCycleLR( optimizer, max_lr=max_lr, total_steps=total_steps, final_div_factor=1000, last_epoch=-1, pct_start=2/num_epochs ) def save_ckpt(tag): ckpt_path = outdir+f'/{tag}.pth' if accelerator.is_main_process: unwrapped_model = accelerator.unwrap_model(model) torch.save({ 'epoch': epoch, 'model_state_dict': unwrapped_model.state_dict(), 'optimizer_state_dict': optimizer.state_dict(), 'lr_scheduler': lr_scheduler.state_dict(), 'train_losses': losses, 'test_losses': test_losses, 'lrs': lrs, }, ckpt_path) print(f"\n---saved {outdir}/{tag} ckpt!---\n") def load_ckpt(tag,load_lr=True,load_optimizer=True,load_epoch=True,strict=True,outdir=outdir,multisubj_loading=False): print(f"\n---loading {outdir}/{tag}.pth ckpt---\n") checkpoint = torch.load(outdir+'/last.pth', map_location='cpu') state_dict = checkpoint['model_state_dict'] if multisubj_loading: # remove incompatible ridge layer that will otherwise error state_dict.pop('ridge.linears.0.weight',None) model.load_state_dict(state_dict, strict=strict) if load_epoch: globals()["epoch"] = checkpoint['epoch'] print("Epoch",epoch) if load_optimizer: optimizer.load_state_dict(checkpoint['optimizer_state_dict']) if load_lr: lr_scheduler.load_state_dict(checkpoint['lr_scheduler']) del checkpoint print("\nDone with model preparations!") num_params = utils.count_params(model) # # Weights and Biases # In[18]: if local_rank==0 and wandb_log: # only use main process for wandb logging import wandb wandb_project = 'mindeye_semantic_cluster' print(f"wandb {wandb_project} run {model_name}") # need to configure wandb beforehand in terminal with "wandb init"! wandb_config = { "model_name": model_name, "global_batch_size": global_batch_size, "batch_size": batch_size, "num_epochs": num_epochs, "num_sessions": num_sessions, "num_params": num_params, "clip_scale": clip_scale, "prior_scale": prior_scale, "blur_scale": blur_scale, "use_image_aug": use_image_aug, "max_lr": max_lr, "mixup_pct": mixup_pct, "num_samples_per_epoch": num_samples_per_epoch, "num_test": num_test, "ckpt_interval": ckpt_interval, "ckpt_saving": ckpt_saving, "seed": seed, "distributed": distributed, "num_devices": num_devices, "world_size": world_size, "train_url": train_url, "test_url": test_url, } print("wandb_config:\n",wandb_config) print("wandb_id:",model_name) wandb.login(host='https://stability.wandb.io') wandb.init( id=model_name, project=wandb_project, name=model_name, config=wandb_config, resume="allow", ) else: wandb_log = False # # Main # In[19]: epoch = 0 losses, test_losses, lrs = [], [], [] best_test_loss = 1e9 torch.cuda.empty_cache() # In[20]: # load multisubject stage1 ckpt if set if multisubject_ckpt is not None: load_ckpt("last",outdir=multisubject_ckpt,load_lr=False,load_optimizer=False,load_epoch=False,strict=False,multisubj_loading=True) # In[21]: train_dls = [train_dl[f'subj0{s}'] for s in subj_list] model, optimizer, *train_dls, lr_scheduler, semantic_cluster_onehot = accelerator.prepare(model, optimizer, *train_dls, lr_scheduler, semantic_cluster_onehot) # leaving out test_dl since we will only have local_rank 0 device do evals # In[22]: print(num_iterations_per_epoch) # In[ ]: print(f"{model_name} starting with epoch {epoch} / {num_epochs}") progress_bar = tqdm(range(epoch,num_epochs), ncols=1200, disable=(local_rank!=0)) test_image, test_voxel = None, None mse = nn.MSELoss() l1 = nn.L1Loss() soft_loss_temps = utils.cosine_anneal(0.004, 0.0075, num_epochs - int(mixup_pct * num_epochs)) for epoch in progress_bar: model.train() fwd_percent_correct = 0. bwd_percent_correct = 0. test_fwd_percent_correct = 0. test_bwd_percent_correct = 0. recon_cossim = 0. test_recon_cossim = 0. recon_mse = 0. test_recon_mse = 0. loss_clip_total = 0. loss_blurry_total = 0. loss_blurry_cont_total = 0. test_loss_clip_total = 0. loss_prior_total = 0. test_loss_prior_total = 0. loss_RR_total = 0. test_loss_RR_total = 0. blurry_pixcorr = 0. test_blurry_pixcorr = 0. # needs >.456 to beat low-level subj01 results in mindeye v1 class_precisions_1 = 0 test_class_precisions_1 = 0 class_precisions_5 = 0 test_class_precisions_5 = 0 class_precisions_10 = 0 test_class_precisions_10 = 0 # pre-load all batches for this epoch (it's MUCH faster to pre-load in bulk than to separate loading per batch) voxel_iters = {} # empty dict because diff subjects have differing # of voxels image_iters = torch.zeros(num_iterations_per_epoch, batch_size*len(subj_list), 3, 224, 224).float() annot_iters = {} perm_iters, betas_iters, select_iters = {}, {}, {} images_indexes = {} for s, train_dl in enumerate(train_dls): with torch.cuda.amp.autocast(dtype=data_type): iter = -1 for behav0, past_behav0, future_behav0, old_behav0 in train_dl: # Load images to cpu from hdf5 (requires sorted indexing) image_idx = behav0[:,0,0].cpu().long().numpy() image0, image_sorted_idx = np.unique(image_idx, return_index=True) if len(image0) != len(image_idx): # hdf5 cant handle duplicate indexing continue iter += 1 image0 = torch.tensor(images[image0], dtype=data_type) image_iters[iter,s*batch_size:s*batch_size+batch_size] = image0 images_indexes[f"subj0{s}_iter{iter}"] = image_sorted_idx # Load voxels for current batch, matching above indexing voxel_idx = behav0[:,0,5].cpu().long().numpy() voxel_sorted_idx = voxel_idx[image_sorted_idx] voxel0 = voxels[f'subj0{subj_list[s]}'][voxel_sorted_idx] voxel0 = torch.Tensor(voxel0).unsqueeze(1) if epoch < int(mixup_pct * num_epochs): voxel0, perm, betas, select = utils.mixco(voxel0) perm_iters[f"subj0{subj_list[s]}_iter{iter}"] = perm betas_iters[f"subj0{subj_list[s]}_iter{iter}"] = betas select_iters[f"subj0{subj_list[s]}_iter{iter}"] = select voxel_iters[f"subj0{subj_list[s]}_iter{iter}"] = voxel0 if iter >= num_iterations_per_epoch-1: break # you now have voxel_iters and image_iters with num_iterations_per_epoch batches each for train_i in range(num_iterations_per_epoch): with torch.cuda.amp.autocast(dtype=data_type): optimizer.zero_grad() loss=0. voxel_list = [voxel_iters[f"subj0{s}_iter{train_i}"].detach().to(device) for s in subj_list] image = image_iters[train_i].detach() image = image.to(device) if use_image_aug: image = img_augment(image) clip_target = clip_img_embedder(image) assert not torch.any(torch.isnan(clip_target)) if epoch < int(mixup_pct * num_epochs): perm_list = [perm_iters[f"subj0{s}_iter{train_i}"].detach().to(device) for s in subj_list] perm = torch.cat(perm_list, dim=0) betas_list = [betas_iters[f"subj0{s}_iter{train_i}"].detach().to(device) for s in subj_list] betas = torch.cat(betas_list, dim=0) select_list = [select_iters[f"subj0{s}_iter{train_i}"].detach().to(device) for s in subj_list] select = torch.cat(select_list, dim=0) voxel_ridge_list = [model.ridge(voxel_list[si],si) for si,s in enumerate(subj_list)] voxel_ridge = torch.cat(voxel_ridge_list, dim=0) backbone, clip_voxels, blurry_image_enc_ = model.backbone(voxel_ridge) if clip_scale>0: clip_voxels_norm = nn.functional.normalize(clip_voxels.flatten(1), dim=-1) clip_target_norm = nn.functional.normalize(clip_target.flatten(1), dim=-1) # if use_prior: # loss_prior, prior_out = model.diffusion_prior(text_embed=backbone, image_embed=clip_target) # loss_prior_total += loss_prior.item() # loss_prior *= prior_scale # loss += loss_prior # recon_cossim += nn.functional.cosine_similarity(prior_out, clip_target).mean().item() # recon_mse += mse(prior_out, clip_target).item() logits = model.RRClassifier(backbone.flatten(1)) #print(logits.shape, torch.argmax(semantic_cluster_onehot[images_indexes[f"subj0{s}_iter{train_i}"]], dim=1).shape) #print(logits, torch.argmax(semantic_cluster_onehot[images_indexes[f"subj0{s}_iter{train_i}"]], dim=1)) loss_RR = nn.functional.cross_entropy(logits, torch.argmax(semantic_cluster_onehot[images_indexes[f"subj0{s}_iter{train_i}"]], dim=1).to(logits.device)) #print("backbone.shape",backbone.shape, "clip_voxels.shape",clip_voxels.shape, "blurry_image_enc_[0].shape",blurry_image_enc_[0].shape, "blurry_image_enc_[1].shape",blurry_image_enc_[1].shape) #something loss_RR_total += loss_RR.item() loss += loss_RR if clip_scale>0: if epoch < int(mixup_pct * num_epochs): loss_clip = utils.mixco_nce( clip_voxels_norm, clip_target_norm, temp=.006, perm=perm, betas=betas, select=select) else: epoch_temp = soft_loss_temps[epoch-int(mixup_pct*num_epochs)] loss_clip = utils.soft_clip_loss( clip_voxels_norm, clip_target_norm, temp=epoch_temp) loss_clip_total += loss_clip.item() loss_clip *= clip_scale loss += loss_clip if blurry_recon: image_enc_pred, transformer_feats = blurry_image_enc_ image_enc = autoenc.encode(2*image-1).latent_dist.mode() * 0.18215 loss_blurry = l1(image_enc_pred, image_enc) loss_blurry_total += loss_blurry.item() if epoch < int(mixup_pct * num_epochs): image_enc_shuf = image_enc[perm] betas_shape = [-1] + [1]*(len(image_enc.shape)-1) image_enc[select] = image_enc[select] * betas[select].reshape(*betas_shape) + \ image_enc_shuf[select] * (1 - betas[select]).reshape(*betas_shape) image_norm = (image - mean)/std image_aug = (blur_augs(image) - mean)/std _, cnx_embeds = cnx(image_norm) _, cnx_aug_embeds = cnx(image_aug) cont_loss = utils.soft_cont_loss( nn.functional.normalize(transformer_feats.reshape(-1, transformer_feats.shape[-1]), dim=-1), nn.functional.normalize(cnx_embeds.reshape(-1, cnx_embeds.shape[-1]), dim=-1), nn.functional.normalize(cnx_aug_embeds.reshape(-1, cnx_embeds.shape[-1]), dim=-1), temp=0.2) loss_blurry_cont_total += cont_loss.item() loss += (loss_blurry + 0.1*cont_loss) * blur_scale #/.18215 if clip_scale>0: # forward and backward top 1 accuracy labels = torch.arange(len(clip_voxels_norm)).to(clip_voxels_norm.device) fwd_percent_correct += utils.topk(utils.batchwise_cosine_similarity(clip_voxels_norm, clip_target_norm), labels, k=1).item() bwd_percent_correct += utils.topk(utils.batchwise_cosine_similarity(clip_target_norm, clip_voxels_norm), labels, k=1).item() if blurry_recon: with torch.no_grad(): # only doing pixcorr eval on a subset of the samples per batch because its costly & slow to compute autoenc.decode() random_samps = np.random.choice(np.arange(len(image)), size=len(image)//5, replace=False) blurry_recon_images = (autoenc.decode(image_enc_pred[random_samps]/0.18215).sample/ 2 + 0.5).clamp(0,1) pixcorr = utils.pixcorr(image[random_samps], blurry_recon_images) blurry_pixcorr += pixcorr.item() class_precisions_1 += classPrecision(logits, semantic_cluster_onehot[images_indexes[f"subj0{s}_iter{train_i}"]]) class_precisions_5 += classPrecision(logits, semantic_cluster_onehot[images_indexes[f"subj0{s}_iter{train_i}"]], 5) class_precisions_10 += classPrecision(logits, semantic_cluster_onehot[images_indexes[f"subj0{s}_iter{train_i}"]], 10) utils.check_loss(loss) accelerator.backward(loss) optimizer.step() losses.append(loss.item()) lrs.append(optimizer.param_groups[0]['lr']) if lr_scheduler_type is not None: lr_scheduler.step() model.eval() if local_rank==0: with torch.no_grad(), torch.cuda.amp.autocast(dtype=data_type): for test_i, (behav, past_behav, future_behav, old_behav) in enumerate(test_dl): # all test samples should be loaded per batch such that test_i should never exceed 0 assert len(behav) == num_test ## Average same-image repeats ## if test_image is None: voxel = voxels[f'subj0{subj}'][behav[:,0,5].cpu().long()].unsqueeze(1) image = behav[:,0,0].cpu().long() unique_image, sort_indices = torch.unique(image, return_inverse=True) for im in unique_image: locs = torch.where(im == image)[0] if len(locs)==1: locs = locs.repeat(3) elif len(locs)==2: locs = locs.repeat(2)[:3] assert len(locs)==3 if test_image is None: test_image = torch.Tensor(images[im][None]) test_voxel = voxel[locs][None] else: test_image = torch.vstack((test_image, torch.Tensor(images[im][None]))) test_voxel = torch.vstack((test_voxel, voxel[locs][None])) loss=0. test_indices = torch.arange(len(test_voxel))[:300] voxel = test_voxel[test_indices].to(device) image = test_image[test_indices].to(device) assert len(image) == 300 clip_target = clip_img_embedder(image.float()) for rep in range(3): voxel_ridge = model.ridge(voxel[:,rep],0) # 0th index of subj_list backbone0, clip_voxels0, blurry_image_enc_ = model.backbone(voxel_ridge) logits0 = model.RRClassifier(backbone0.flatten(1)) if rep==0: clip_voxels = clip_voxels0 backbone = backbone0 logits = logits0 else: clip_voxels += clip_voxels0 backbone += backbone0 logits += logits0 clip_voxels /= 3 backbone /= 3 logits /= 3 print(logits.shape, torch.argmax(semantic_cluster_onehot[test_indices], dim=1).shape) RR_loss = nn.functional.cross_entropy(logits, torch.argmax(semantic_cluster_onehot[test_indices], dim=1).to(logits.device)) test_loss_RR_total += RR_loss.item() loss += RR_loss if clip_scale>0: clip_voxels_norm = nn.functional.normalize(clip_voxels.flatten(1), dim=-1) clip_target_norm = nn.functional.normalize(clip_target.flatten(1), dim=-1) # for some evals, only doing a subset of the samples per batch because of computational cost random_samps = np.random.choice(np.arange(len(image)), size=len(image)//5, replace=False) # if use_prior: # loss_prior, contaminated_prior_out = model.diffusion_prior(text_embed=backbone[random_samps], image_embed=clip_target[random_samps]) # test_loss_prior_total += loss_prior.item() # loss_prior *= prior_scale # loss += loss_prior if clip_scale>0: loss_clip = utils.soft_clip_loss( clip_voxels_norm, clip_target_norm, temp=.006) test_loss_clip_total += loss_clip.item() loss_clip = loss_clip * clip_scale loss += loss_clip if blurry_recon: image_enc_pred, _ = blurry_image_enc_ blurry_recon_images = (autoenc.decode(image_enc_pred[random_samps]/0.18215).sample / 2 + 0.5).clamp(0,1) pixcorr = utils.pixcorr(image[random_samps], blurry_recon_images) test_blurry_pixcorr += pixcorr.item() if clip_scale>0: # forward and backward top 1 accuracy labels = torch.arange(len(clip_voxels_norm)).to(clip_voxels_norm.device) test_fwd_percent_correct += utils.topk(utils.batchwise_cosine_similarity(clip_voxels_norm, clip_target_norm), labels, k=1).item() test_bwd_percent_correct += utils.topk(utils.batchwise_cosine_similarity(clip_target_norm, clip_voxels_norm), labels, k=1).item() test_class_precisions_1 += classPrecision(logits, semantic_cluster_onehot[test_indices]) test_class_precisions_5 += classPrecision(logits, semantic_cluster_onehot[test_indices], 5) test_class_precisions_10 += classPrecision(logits, semantic_cluster_onehot[test_indices], 10) utils.check_loss(loss) test_losses.append(loss.item()) assert (test_i+1) == 1 logs = {"train/loss": np.mean(losses[-(train_i+1):]), "test/loss": np.mean(test_losses[-(test_i+1):]), "train/lr": lrs[-1], "train/num_steps": len(losses), "test/num_steps": len(test_losses), "train/fwd_pct_correct": fwd_percent_correct / (train_i + 1), "train/bwd_pct_correct": bwd_percent_correct / (train_i + 1), "test/test_fwd_pct_correct": test_fwd_percent_correct / (test_i + 1), "test/test_bwd_pct_correct": test_bwd_percent_correct / (test_i + 1), "train/loss_clip_total": loss_clip_total / (train_i + 1), "train/loss_blurry_total": loss_blurry_total / (train_i + 1), "train/loss_blurry_cont_total": loss_blurry_cont_total / (train_i + 1), "test/loss_clip_total": test_loss_clip_total / (test_i + 1), "train/blurry_pixcorr": blurry_pixcorr / (train_i + 1), "test/blurry_pixcorr": test_blurry_pixcorr / (test_i + 1), "train/recon_cossim": recon_cossim / (train_i + 1), "test/recon_cossim": test_recon_cossim / (test_i + 1), "train/recon_mse": recon_mse / (train_i + 1), "test/recon_mse": test_recon_mse / (test_i + 1), "train/loss_prior": loss_prior_total / (train_i + 1), "test/loss_prior": test_loss_prior_total / (test_i + 1), "train/loss_RR": loss_RR_total / (train_i + 1), "test/loss_RR": test_loss_RR_total / (test_i + 1), "train/class_precisions_1": class_precisions_1 / (train_i + 1), "test/class_precisions_1": test_class_precisions_1 / (test_i + 1), "train/class_precisions_5": class_precisions_5 / (train_i + 1), "test/class_precisions_5": test_class_precisions_5 / (test_i + 1), "train/class_precisions_10": class_precisions_10 / (train_i + 1), "test/class_precisions_10": test_class_precisions_10 / (test_i + 1), } # if finished training, save jpg recons if they exist if (epoch == num_epochs-1) or (epoch % ckpt_interval == 0): if blurry_recon: image_enc = autoenc.encode(2*image[:4]-1).latent_dist.mode() * 0.18215 # transform blurry recon latents to images and plot it fig, axes = plt.subplots(1, 8, figsize=(10, 4)) jj=-1 for j in [0,1,2,3]: jj+=1 axes[jj].imshow(utils.torch_to_Image((autoenc.decode(image_enc[[j]]/0.18215).sample / 2 + 0.5).clamp(0,1))) axes[jj].axis('off') jj+=1 axes[jj].imshow(utils.torch_to_Image((autoenc.decode(image_enc_pred[[j]]/0.18215).sample / 2 + 0.5).clamp(0,1))) axes[jj].axis('off') if wandb_log: logs[f"test/blur_recons"] = wandb.Image(fig, caption=f"epoch{epoch:03d}") plt.close() else: plt.show() progress_bar.set_postfix(**logs) if wandb_log: wandb.log(logs) # Save model checkpoint and reconstruct if (ckpt_saving) and (epoch % ckpt_interval == 0): save_ckpt(f'last') # wait for other GPUs to catch up if needed accelerator.wait_for_everyone() torch.cuda.empty_cache() print("\n===Finished!===\n") if ckpt_saving: save_ckpt(f'last') # In[ ]: plt.plot(losses) plt.show() plt.plot(test_losses) plt.show() # In[ ]: import wandb wandb.login()