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HER2 reader: ViT-S/16 encoders at every stage, the deployed reader, per-slide predictions and paper data
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This repository's encoders at stage 2 and later were trained by distillation from H-optimus-0 (Bioptimus), which is
released under the Apache License, Version 2.0: https://www.apache.org/licenses/LICENSE-2.0
H-optimus-0 itself is not redistributed here. Our encoders are new weights (a ViT-S/16, 22M parameters) trained to match
its outputs on TCGA tiles.
Training and evaluation data: The Cancer Genome Atlas (NCI Genomic Data Commons, open access); CPTAC-BRCA (open);
Yale-HER2 (The Cancer Imaging Archive, HER2-TUMOR-ROIS, CC BY 4.0). HEROHE (CC BY-NC-ND 3.0) and BCNB (non-commercial)
were used for evaluation only, and no per-slide data from them are included.