Image Feature Extraction
timm
Safetensors
pathology
histopathology
her2
breast-cancer
h-and-e
vision-transformer
multiple-instance-learning
Instructions to use cloudkites/her2-reader with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- timm
How to use cloudkites/her2-reader with timm:
import timm model = timm.create_model("hf-hub:cloudkites/her2-reader", pretrained=True) - Notebooks
- Google Colab
- Kaggle
Download data/paper/book-data/her2_dot_rows.dat from cloudkites/her2-reader: direct link, hf CLI and curl.
- Browser
- Download file 1.45 kB
-
https://huggingface.co/cloudkites/her2-reader/resolve/main/data/paper/book-data/her2_dot_rows.dat
- Command line
-
hf download hf://cloudkites/her2-reader/data/paper/book-data/her2_dot_rows.dat
-
curl -L -o her2_dot_rows.dat https://huggingface.co/cloudkites/her2-reader/resolve/main/data/paper/book-data/her2_dot_rows.dat
1.45 kB
| y label | |
| 1 \textbf{Controls} | |
| 2 random weights, ViT-S/16 | |
| 3 DINOv2 ViT-S/14 (natural images) | |
| 4 ResNet-50, ImageNet (Aug.) | |
| 5.6 \textbf{Ours: ssl-vits16} | |
| 6.6 ssl-vits16 step 5k | |
| 7.6 ssl-vits16 step 20k | |
| 8.6 ssl-vits16 step 35k | |
| 9.6 ssl-vits16 step 40k | |
| 10.6 ssl-vits16 step 45k | |
| 11.6 ssl-vits16 step 50k | |
| 12.6 ssl-vits16 step 55k | |
| 13.6 ssl-vits16 step 60k | |
| 14.6 ssl-vits16 step 65k | |
| 15.6 ssl-vits16 final (93k) | |
| 17.2 \textbf{Ours: ssl-vitb16} | |
| 18.2 ssl-vitb16 step 10k | |
| 19.2 ssl-vitb16 step 35k | |
| 20.2 ssl-vitb16 step 40k | |
| 21.8 \textbf{Ours: distilled students} | |
| 22.8 D13: Midnight-12k teacher, 20k steps | |
| 23.8 D14: H-optimus-0 teacher, 20k steps | |
| 24.8 D15: Midnight, 5k, from random | |
| 25.8 D15: Midnight, 5k, from step 50k | |
| 26.8 D15: Midnight, 5k, from final | |
| 27.8 D16: H-optimus-0, 5k, from random | |
| 28.8 D16: H-optimus-0, 5k, from step 50k | |
| 29.8 \textbf{\textcolor{hrBest}{D16: H-optimus-0, 5k, from final}} | |
| 31.4 \textbf{Ours: ViT-B/16 students} | |
| 32.4 D18: H-optimus-0, ViT-B/16, 5k, from step 40k | |
| 33.4 D18: H-optimus-0, ViT-B/16, 5k, from step 45k | |
| 34.4 D18: H-optimus-0, ViT-B/16, 5k, from step 50k | |
| 36 \textbf{Released encoders} | |
| 37 Hibou-B (Aug.) | |
| 38 Phikon v1, ViT-B/16 (Aug.) | |
| 39 Virchow2 (Aug.) | |
| 40 Midnight-12k, CLS | |
| 41 Midnight-12k, CLS+mean | |
| 42 Midnight-12k, CLS, 1.0\,\textmu m/px | |
| 43 H-optimus-0, ImageNet norm. (Aug.) | |
| 44 H-optimus-0, ImageNet norm. (Sep.) | |
| 45 H-optimus-0, card norm., CLS | |
| 46 H-optimus-0, card norm., CLS+mean | |
| 47 H-optimus-0, card norm., CLS, 1.0\,\textmu m/px | |