Image Feature Extraction
timm
Safetensors
pathology
histopathology
her2
breast-cancer
h-and-e
vision-transformer
multiple-instance-learning
Instructions to use cloudkites/her2-reader with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- timm
How to use cloudkites/her2-reader with timm:
import timm model = timm.create_model("hf-hub:cloudkites/her2-reader", pretrained=True) - Notebooks
- Google Colab
- Kaggle
Download data/paper/book-data/her2_matrix.dat from cloudkites/her2-reader: direct link, hf CLI and curl.
- Browser
- Download file 5.65 kB
-
https://huggingface.co/cloudkites/her2-reader/resolve/main/data/paper/book-data/her2_matrix.dat
- Command line
-
hf download hf://cloudkites/her2-reader/data/paper/book-data/her2_matrix.dat
-
curl -L -o her2_matrix.dat https://huggingface.co/cloudkites/her2-reader/resolve/main/data/paper/book-data/her2_matrix.dat
5.65 kB
| key group probe yy yy_sd tt tt_sd ty ty_sd yt yt_sd yy_mf yy_mf_sd tt_mf tt_mf_sd ty_mf ty_mf_sd yt_mf yt_mf_sd | |
| vits16-random-init ctl 0.0962 0.5900 0.0040 0.5080 0.0124 0.4375 0.0317 0.4849 0.0020 0.6021 0.0104 0.5166 0.0137 0.4466 0.0333 0.4892 0.0020 | |
| dinov2-vits14 ctl 0.3104 0.7192 0.0203 0.5011 0.0226 0.5889 0.0203 0.5764 0.0115 0.7333 0.0085 0.5249 0.0178 0.5615 0.0139 0.5629 0.0065 | |
| resnet50-imagenet ctl nan 0.7009 0.0427 0.5517 0.0279 0.6296 0.0149 0.5606 0.0069 0.7204 0.0603 0.5541 0.0277 0.6048 0.0082 0.5400 0.0031 | |
| ssl-vits16-step5k s16 0.1954 0.7264 0.0064 0.5697 0.0129 0.6764 0.0184 0.5228 0.0041 0.7500 0.0056 0.5762 0.0147 0.6074 0.0217 0.5122 0.0058 | |
| ssl-vits16-step20k s16 0.2883 0.7382 0.0126 0.5675 0.0106 0.6174 0.0430 0.5451 0.0010 0.7838 0.0231 0.5838 0.0086 0.5928 0.0179 0.5393 0.0016 | |
| ssl-vits16-step35k s16 0.3337 0.8039 0.0106 0.5992 0.0082 0.5613 0.0149 0.5306 0.0038 0.8191 0.0050 0.6349 0.0055 0.5750 0.0144 0.5265 0.0048 | |
| ssl-vits16-step40k s16 0.3363 0.7919 0.0193 0.6199 0.0090 0.5651 0.0174 0.5144 0.0034 0.8122 0.0083 0.6318 0.0188 0.5590 0.0152 0.5137 0.0028 | |
| ssl-vits16-step45k s16 0.3368 0.7601 0.0245 0.5887 0.0192 0.5873 0.0660 0.5253 0.0061 0.7785 0.0237 0.5968 0.0295 0.5824 0.0382 0.5262 0.0033 | |
| ssl-vits16-step50k s16 0.3379 0.7808 0.0174 0.6085 0.0042 0.5499 0.0167 0.5281 0.0060 0.8165 0.0120 0.6248 0.0064 0.5506 0.0041 0.5204 0.0063 | |
| ssl-vits16-step55k s16 0.3422 0.7880 0.0285 0.5888 0.0031 0.6004 0.0520 0.5322 0.0064 0.8096 0.0256 0.6164 0.0160 0.5806 0.0272 0.5236 0.0040 | |
| ssl-vits16-step60k s16 0.3412 0.7775 0.0090 0.5958 0.0062 0.5922 0.0314 0.5318 0.0034 0.8186 0.0078 0.6057 0.0076 0.5742 0.0079 0.5262 0.0047 | |
| ssl-vits16-step65k s16 0.3448 0.7588 0.0154 0.6211 0.0165 0.5530 0.0541 0.5177 0.0018 0.8045 0.0095 0.6338 0.0107 0.5392 0.0256 0.5188 0.0055 | |
| ssl-vits16-final s16 0.3415 0.7675 0.0267 0.5891 0.0128 0.5841 0.0385 0.5205 0.0029 0.8204 0.0206 0.6085 0.0177 0.5872 0.0372 0.5155 0.0030 | |
| ssl-vitb16-step10k b16 0.2753 0.7575 0.0358 0.5877 0.0045 0.5724 0.0202 0.5307 0.0105 0.7751 0.0165 0.6038 0.0033 0.5575 0.0028 0.5275 0.0085 | |
| ssl-vitb16-step35k b16 0.3636 0.8290 0.0099 0.5819 0.0184 0.6380 0.0233 0.5455 0.0017 0.8518 0.0021 0.6152 0.0111 0.5975 0.0230 0.5364 0.0029 | |
| ssl-vitb16-step40k b16 0.3834 0.7934 0.0135 0.6074 0.0161 0.6651 0.0377 0.5472 0.0057 0.8103 0.0140 0.6306 0.0085 0.6187 0.0115 0.5319 0.0027 | |
| distill-midnight-20k dst 0.4872 0.7714 0.0195 0.5899 0.0170 0.7010 0.0206 0.5454 0.0081 0.8063 0.0047 0.5863 0.0236 0.6666 0.0171 0.5403 0.0053 | |
| distill-hoptimus-20k dst 0.4891 0.8064 0.0183 0.6688 0.0101 0.7157 0.0151 0.5733 0.0040 0.8438 0.0134 0.6764 0.0125 0.6989 0.0201 0.5672 0.0056 | |
| distill-midnight-5k-from-random dst 0.2887 0.7616 0.0241 0.5474 0.0242 0.6205 0.0347 0.5288 0.0026 0.7686 0.0230 0.5606 0.0207 0.5987 0.0349 0.5241 0.0050 | |
| distill-midnight-5k-from-vits16-step50k dst 0.4502 0.7718 0.0161 0.5688 0.0093 0.7244 0.0175 0.5576 0.0113 0.8077 0.0152 0.5826 0.0130 0.6784 0.0132 0.5555 0.0049 | |
| distill-midnight-5k-from-vits16-final dst 0.4605 0.7923 0.0214 0.5878 0.0072 0.6512 0.0293 0.5526 0.0017 0.8221 0.0128 0.6054 0.0199 0.6192 0.0122 0.5426 0.0035 | |
| distill-hoptimus-5k-from-random dst 0.3291 0.7922 0.0088 0.5922 0.0143 0.7387 0.0281 0.5632 0.0016 0.8157 0.0167 0.6197 0.0025 0.6986 0.0170 0.5618 0.0011 | |
| distill-hoptimus-5k-from-vits16-step50k dst 0.4459 0.8143 0.0083 0.6361 0.0038 0.7393 0.0173 0.6215 0.0038 0.8295 0.0044 0.6721 0.0082 0.7225 0.0131 0.5962 0.0058 | |
| distill-hoptimus-5k-from-vits16-final dst 0.4514 0.8196 0.0197 0.6228 0.0229 0.7443 0.0219 0.5930 0.0059 0.8425 0.0088 0.6577 0.0155 0.7283 0.0126 0.5774 0.0025 | |
| distill-hoptimus-vitb16-5k-from-vitb16-step40k dstb 0.4714 0.8177 0.0098 0.6332 0.0157 0.7757 0.0098 0.6406 0.0080 0.8471 0.0013 0.6621 0.0065 0.7585 0.0118 0.6224 0.0025 | |
| distill-hoptimus-vitb16-5k-from-vitb16-step45k dstb 0.4797 0.7765 0.0094 0.6329 0.0143 0.7623 0.0040 0.6215 0.0069 0.8289 0.0128 0.6675 0.0138 0.7474 0.0091 0.6038 0.0048 | |
| distill-hoptimus-vitb16-5k-from-vitb16-step50k dstb 0.4899 0.8032 0.0397 0.6148 0.0022 0.7547 0.0075 0.6136 0.0012 0.8414 0.0124 0.6414 0.0020 0.7293 0.0107 0.6005 0.0038 | |
| hibou-b ref nan 0.7794 0.0119 0.6442 0.0161 0.7172 0.0299 0.6309 0.0105 0.8167 0.0151 0.6643 0.0093 0.6791 0.0243 0.6057 0.0049 | |
| phikon ref 0.5507 0.8756 0.0047 0.6690 0.0085 0.8128 0.0191 0.6606 0.0003 0.8902 0.0064 0.6872 0.0065 0.7682 0.0168 0.6484 0.0030 | |
| virchow2 ref nan 0.8673 0.0086 0.6336 0.0146 0.7425 0.0349 0.6541 0.0058 0.8889 0.0095 0.6652 0.0192 0.7082 0.0240 0.6356 0.0092 | |
| midnight12k ref 0.6904 0.8064 0.0091 0.5970 0.0028 0.7163 0.0086 0.6240 0.0039 0.8340 0.0028 0.6111 0.0049 0.6954 0.0027 0.6059 0.0020 | |
| midnight12k-cls-mean ref 0.7050 0.8114 0.0112 0.6105 0.0084 0.7337 0.0209 0.6376 0.0039 0.8533 0.0071 0.6324 0.0042 0.6998 0.0115 0.6271 0.0043 | |
| midnight12k-1.0um ref nan 0.8013 0.0060 0.5858 0.0127 0.7243 0.0269 0.6087 0.0054 0.8253 0.0222 0.5984 0.0129 0.6807 0.0189 0.6007 0.0034 | |
| hoptimus0-imagenetnorm ref nan 0.8978 0.0104 0.6685 0.0232 0.7977 0.0172 0.6562 0.0013 0.9119 0.0064 0.6828 0.0155 0.7465 0.0191 0.6420 0.0020 | |
| hoptimus0-imagenetnorm-repeat ref nan 0.8954 0.0143 0.6683 0.0145 0.7871 0.0310 0.6562 0.0052 0.9124 0.0064 0.6784 0.0145 0.7509 0.0163 0.6425 0.0028 | |
| hoptimus0-cardnorm ref 0.5811 0.8868 0.0072 0.6755 0.0162 0.8100 0.0116 0.6531 0.0078 0.9056 0.0065 0.6957 0.0132 0.7642 0.0102 0.6419 0.0071 | |
| hoptimus0-cls-mean ref 0.5920 0.8925 0.0157 0.6723 0.0179 0.8028 0.0253 0.6630 0.0057 0.9151 0.0018 0.6882 0.0111 0.7640 0.0115 0.6488 0.0050 | |
| hoptimus0-1.0um ref nan 0.9088 0.0066 0.6591 0.0153 0.8033 0.0109 0.6419 0.0071 0.9247 0.0076 0.6774 0.0127 0.7640 0.0200 0.6298 0.0042 | |