her2-reader / data /paper /paper-data /table_her2tasks_full.tex
nsugar's picture
HER2 reader: ViT-S/16 encoders at every stage, the deployed reader, per-slide predictions and paper data (part 3)
4367928 verified
Raw History Blame Contribute Delete
1.86 kB
% Generated by docs/paper/paper_her2tasks.py (TCGA-BRCA; 10 paired seeds; p: exact one-sided Wilcoxon)
\begin{tabularx}{\linewidth}{@{}>{\raggedright\arraybackslash}X c c c c c c c@{}}
\toprule
test & \textbf{ours} & Phikon & H-optimus-0 & Hibou-B & Midnight-12k & ResNet-50 & DINOv2-S \\
\midrule
HER2-low, head & \textbf{0.649$^{4}$} & 0.741$^{1}$ & 0.692$^{2}$ & 0.678$^{3}$ & 0.626$^{5}$ & 0.615$^{6}$ & 0.613$^{7}$ \\
\quad SD; $p$ vs ours & 0.024; -- & 0.028; $<$0.01 & 0.026; $<$0.01 & 0.014; 0.02 & 0.036; 0.08 & 0.031; 0.02 & 0.037; $<$0.01 \\
HER2-low, reader Y & \textbf{0.456$^{6}$} & 0.479$^{4}$ & 0.500$^{2}$ & 0.542$^{1}$ & 0.494$^{3}$ & 0.462$^{5}$ & 0.441$^{7}$ \\
\quad SD; $p$ vs ours & 0.010; -- & 0.013; $<$0.01 & 0.007; $<$0.01 & 0.015; $<$0.01 & 0.010; $<$0.01 & 0.014; 0.28 & 0.019; 0.03 \\
HER2-low, reader T & \textbf{0.560$^{4}$} & 0.551$^{6}$ & 0.569$^{2}$ & 0.553$^{5}$ & 0.570$^{1}$ & 0.541$^{7}$ & 0.565$^{3}$ \\
\quad SD; $p$ vs ours & 0.026; -- & 0.044; 0.28 & 0.030; 0.28 & 0.032; 0.31 & 0.029; 0.28 & 0.028; 0.05 & 0.051; 0.31 \\
FISH, head & \textbf{0.544$^{2}$} & 0.475$^{5}$ & 0.546$^{1}$ & 0.485$^{4}$ & 0.538$^{3}$ & 0.468$^{7}$ & 0.471$^{6}$ \\
\quad SD; $p$ vs ours & 0.022; -- & 0.017; $<$0.01 & 0.025; 0.35 & 0.029; $<$0.01 & 0.034; 0.28 & 0.022; $<$0.01 & 0.048; $<$0.01 \\
FISH, reader Y & \textbf{0.682$^{2}$} & 0.619$^{6}$ & 0.706$^{1}$ & 0.672$^{3}$ & 0.650$^{4}$ & 0.575$^{7}$ & 0.632$^{5}$ \\
\quad SD; $p$ vs ours & 0.019; -- & 0.007; $<$0.01 & 0.009; $<$0.01 & 0.015; 0.12 & 0.005; $<$0.01 & 0.016; $<$0.01 & 0.014; $<$0.01 \\
FISH, reader T & \textbf{0.669$^{2}$} & 0.654$^{3}$ & 0.690$^{1}$ & 0.572$^{5}$ & 0.644$^{4}$ & 0.445$^{7}$ & 0.469$^{6}$ \\
\quad SD; $p$ vs ours & 0.024; -- & 0.020; 0.04 & 0.034; 0.04 & 0.034; $<$0.01 & 0.030; 0.01 & 0.030; $<$0.01 & 0.035; $<$0.01 \\
\bottomrule
\end{tabularx}