Lilith-Weather / data /loaders /forecast_dataset.py
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"""
Forecast Dataset for LILITH.
Provides data loading optimized for multi-station forecasting
with graph-based models.
"""
from pathlib import Path
from typing import Dict, List, Optional, Tuple, Union
import numpy as np
import pandas as pd
import torch
from torch.utils.data import Dataset
from loguru import logger
class ForecastDataset(Dataset):
"""
Dataset for graph-based multi-station forecasting.
Instead of loading single stations, this dataset loads data for
multiple stations simultaneously, suitable for GNN-based models.
Each sample contains:
- Observations from N stations for the input period
- Targets for N stations for the forecast period
- Station coordinates and connectivity graph
"""
def __init__(
self,
data_dir: Union[str, Path],
sequence_length: int = 30,
forecast_length: int = 14,
max_stations: int = 500,
spatial_radius: float = 5.0, # degrees
target_variables: Optional[List[str]] = None,
start_date: Optional[str] = None,
end_date: Optional[str] = None,
seed: int = 42,
):
"""
Initialize the forecast dataset.
Args:
data_dir: Directory with processed Parquet files
sequence_length: Days of input history
forecast_length: Days to forecast
max_stations: Maximum stations per sample
spatial_radius: Radius in degrees for station sampling
target_variables: Variables to forecast
start_date: Start date for data (YYYY-MM-DD)
end_date: End date for data (YYYY-MM-DD)
seed: Random seed for reproducibility
"""
self.data_dir = Path(data_dir)
self.sequence_length = sequence_length
self.forecast_length = forecast_length
self.total_length = sequence_length + forecast_length
self.max_stations = max_stations
self.spatial_radius = spatial_radius
self.target_variables = target_variables or ["TMAX", "TMIN", "PRCP"]
self.seed = seed
self.rng = np.random.default_rng(seed)
# Load station metadata
self.stations = pd.read_parquet(self.data_dir / "stations.parquet")
# Parse date range
self.start_date = pd.Timestamp(start_date) if start_date else pd.Timestamp("2000-01-01")
self.end_date = pd.Timestamp(end_date) if end_date else pd.Timestamp("2023-12-31")
# Build date index
self.dates = pd.date_range(
self.start_date,
self.end_date - pd.Timedelta(days=self.total_length),
freq="D",
)
# Build spatial clusters for efficient sampling
self._build_spatial_clusters()
# Cache for loaded data
self._data_cache: Dict[int, pd.DataFrame] = {}
logger.info(
f"ForecastDataset: {len(self.dates)} dates, "
f"{len(self.stations)} stations, {len(self.clusters)} clusters"
)
def _build_spatial_clusters(self) -> None:
"""
Build spatial clusters of stations for efficient sampling.
Groups stations into overlapping clusters based on spatial proximity.
"""
self.clusters = []
# Grid-based clustering
lat_bins = np.arange(-90, 90, self.spatial_radius * 2)
lon_bins = np.arange(-180, 180, self.spatial_radius * 2)
for lat in lat_bins:
for lon in lon_bins:
# Find stations in this grid cell (with overlap)
mask = (
(self.stations["latitude"] >= lat - self.spatial_radius) &
(self.stations["latitude"] < lat + self.spatial_radius * 3) &
(self.stations["longitude"] >= lon - self.spatial_radius) &
(self.stations["longitude"] < lon + self.spatial_radius * 3)
)
cluster_stations = self.stations[mask]["station_id"].tolist()
if len(cluster_stations) >= 10: # Minimum cluster size
self.clusters.append({
"center_lat": lat + self.spatial_radius,
"center_lon": lon + self.spatial_radius,
"station_ids": cluster_stations,
})
def _load_data_for_date(self, date: pd.Timestamp) -> pd.DataFrame:
"""Load data for a specific date range, with caching."""
year = date.year
end_year = (date + pd.Timedelta(days=self.total_length)).year
# Load required years
dfs = []
for y in range(year, end_year + 1):
if y in self._data_cache:
dfs.append(self._data_cache[y])
else:
year_file = self.data_dir / f"observations_{y}.parquet"
if year_file.exists():
df = pd.read_parquet(year_file)
self._data_cache[y] = df
dfs.append(df)
if not dfs:
return pd.DataFrame()
return pd.concat(dfs)
def _build_station_graph(
self,
station_coords: np.ndarray,
) -> Tuple[np.ndarray, np.ndarray]:
"""
Build adjacency information for stations.
Returns edge_index and edge_attr for PyTorch Geometric.
Args:
station_coords: (N, 3) array of [lat, lon, elev]
Returns:
edge_index: (2, E) source and target node indices
edge_attr: (E, 1) edge distances
"""
n_stations = len(station_coords)
edges_src = []
edges_dst = []
edge_weights = []
# Connect stations within spatial radius
for i in range(n_stations):
for j in range(i + 1, n_stations):
# Calculate distance
dlat = station_coords[i, 0] - station_coords[j, 0]
dlon = station_coords[i, 1] - station_coords[j, 1]
dist = np.sqrt(dlat**2 + dlon**2)
if dist < self.spatial_radius:
# Bidirectional edges
edges_src.extend([i, j])
edges_dst.extend([j, i])
edge_weights.extend([dist, dist])
if not edges_src:
# Fallback: connect to k nearest neighbors
from scipy.spatial import KDTree
tree = KDTree(station_coords[:, :2])
for i in range(n_stations):
_, neighbors = tree.query(station_coords[i, :2], k=min(5, n_stations))
for j in neighbors:
if i != j:
dist = np.linalg.norm(station_coords[i, :2] - station_coords[j, :2])
edges_src.append(i)
edges_dst.append(j)
edge_weights.append(dist)
edge_index = np.array([edges_src, edges_dst], dtype=np.int64)
edge_attr = np.array(edge_weights, dtype=np.float32).reshape(-1, 1)
return edge_index, edge_attr
def __len__(self) -> int:
return len(self.dates) * len(self.clusters)
def __getitem__(self, idx: int) -> Dict[str, torch.Tensor]:
"""
Get a multi-station sample.
Returns:
Dict with keys:
- node_features: (N, seq_len, F) station observations
- node_coords: (N, 3) lat/lon/elev
- edge_index: (2, E) graph connectivity
- edge_attr: (E, 1) edge weights
- target_features: (N, forecast_len, T) targets
- mask: (N, seq_len + forecast_len) valid mask
"""
# Decode index
date_idx = idx // len(self.clusters)
cluster_idx = idx % len(self.clusters)
date = self.dates[date_idx]
cluster = self.clusters[cluster_idx]
# Sample stations from cluster
station_ids = cluster["station_ids"]
if len(station_ids) > self.max_stations:
station_ids = self.rng.choice(station_ids, self.max_stations, replace=False).tolist()
n_stations = len(station_ids)
# Load data
data = self._load_data_for_date(date)
if data.empty:
return self._empty_sample(n_stations)
# Filter to selected stations and date range
end_date = date + pd.Timedelta(days=self.total_length - 1)
mask = (
data["station_id"].isin(station_ids) &
(data.index >= date) &
(data.index <= end_date)
)
data = data[mask]
# Prepare feature arrays
feature_cols = [c for c in self.target_variables if c in data.columns]
n_features = len(feature_cols)
node_features = np.zeros((n_stations, self.sequence_length, n_features), dtype=np.float32)
target_features = np.zeros((n_stations, self.forecast_length, n_features), dtype=np.float32)
node_coords = np.zeros((n_stations, 3), dtype=np.float32)
valid_mask = np.zeros((n_stations, self.total_length), dtype=bool)
# Fill in data for each station
for i, station_id in enumerate(station_ids):
station_data = data[data["station_id"] == station_id].sort_index()
# Get station coords
station_meta = self.stations[self.stations["station_id"] == station_id]
if not station_meta.empty:
node_coords[i] = [
station_meta.iloc[0]["latitude"],
station_meta.iloc[0]["longitude"],
station_meta.iloc[0].get("elevation", 0),
]
# Fill input sequence
for j, d in enumerate(pd.date_range(date, periods=self.sequence_length, freq="D")):
if d in station_data.index:
row = station_data.loc[d]
if isinstance(row, pd.DataFrame):
row = row.iloc[0]
for k, col in enumerate(feature_cols):
val = row.get(col, np.nan)
if not pd.isna(val):
node_features[i, j, k] = val
valid_mask[i, j] = True
# Fill target sequence
target_start = date + pd.Timedelta(days=self.sequence_length)
for j, d in enumerate(pd.date_range(target_start, periods=self.forecast_length, freq="D")):
if d in station_data.index:
row = station_data.loc[d]
if isinstance(row, pd.DataFrame):
row = row.iloc[0]
for k, col in enumerate(feature_cols):
val = row.get(col, np.nan)
if not pd.isna(val):
target_features[i, j, k] = val
valid_mask[i, self.sequence_length + j] = True
# Build graph
edge_index, edge_attr = self._build_station_graph(node_coords)
# Replace NaN with 0 (mask indicates valid values)
node_features = np.nan_to_num(node_features, nan=0.0)
target_features = np.nan_to_num(target_features, nan=0.0)
return {
"node_features": torch.from_numpy(node_features),
"node_coords": torch.from_numpy(node_coords),
"edge_index": torch.from_numpy(edge_index),
"edge_attr": torch.from_numpy(edge_attr),
"target_features": torch.from_numpy(target_features),
"mask": torch.from_numpy(valid_mask),
"n_stations": n_stations,
"date": str(date.date()),
}
def _empty_sample(self, n_stations: int) -> Dict[str, torch.Tensor]:
"""Return an empty sample for error cases."""
return {
"node_features": torch.zeros(n_stations, self.sequence_length, len(self.target_variables)),
"node_coords": torch.zeros(n_stations, 3),
"edge_index": torch.zeros(2, 0, dtype=torch.long),
"edge_attr": torch.zeros(0, 1),
"target_features": torch.zeros(n_stations, self.forecast_length, len(self.target_variables)),
"mask": torch.zeros(n_stations, self.total_length, dtype=torch.bool),
"n_stations": n_stations,
"date": "",
}
def collate_variable_graphs(batch: List[Dict]) -> Dict[str, torch.Tensor]:
"""
Custom collate function for variable-size graphs.
Combines multiple samples into a single batched graph.
"""
# Stack fixed-size tensors
node_features = torch.cat([b["node_features"] for b in batch], dim=0)
node_coords = torch.cat([b["node_coords"] for b in batch], dim=0)
target_features = torch.cat([b["target_features"] for b in batch], dim=0)
masks = torch.cat([b["mask"] for b in batch], dim=0)
# Combine edge indices with offsets
edge_indices = []
edge_attrs = []
offset = 0
for b in batch:
edge_index = b["edge_index"]
if edge_index.size(1) > 0:
edge_indices.append(edge_index + offset)
edge_attrs.append(b["edge_attr"])
offset += b["n_stations"]
if edge_indices:
edge_index = torch.cat(edge_indices, dim=1)
edge_attr = torch.cat(edge_attrs, dim=0)
else:
edge_index = torch.zeros(2, 0, dtype=torch.long)
edge_attr = torch.zeros(0, 1)
# Batch indices for graph batching
batch_idx = torch.cat([
torch.full((b["n_stations"],), i, dtype=torch.long)
for i, b in enumerate(batch)
])
return {
"node_features": node_features,
"node_coords": node_coords,
"edge_index": edge_index,
"edge_attr": edge_attr,
"target_features": target_features,
"mask": masks,
"batch": batch_idx,
}