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""" |
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********** |
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Matplotlib |
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********** |
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|
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Draw networks with matplotlib. |
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|
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Examples |
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-------- |
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>>> G = nx.complete_graph(5) |
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>>> nx.draw(G) |
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|
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See Also |
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-------- |
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- :doc:`matplotlib <matplotlib:index>` |
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- :func:`matplotlib.pyplot.scatter` |
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- :obj:`matplotlib.patches.FancyArrowPatch` |
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""" |
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from numbers import Number |
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import networkx as nx |
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from networkx.drawing.layout import ( |
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circular_layout, |
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kamada_kawai_layout, |
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planar_layout, |
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random_layout, |
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shell_layout, |
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spectral_layout, |
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spring_layout, |
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) |
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__all__ = [ |
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"draw", |
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"draw_networkx", |
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"draw_networkx_nodes", |
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"draw_networkx_edges", |
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"draw_networkx_labels", |
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"draw_networkx_edge_labels", |
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"draw_circular", |
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"draw_kamada_kawai", |
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"draw_random", |
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"draw_spectral", |
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"draw_spring", |
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"draw_planar", |
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"draw_shell", |
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] |
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def draw(G, pos=None, ax=None, **kwds): |
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"""Draw the graph G with Matplotlib. |
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Draw the graph as a simple representation with no node |
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labels or edge labels and using the full Matplotlib figure area |
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and no axis labels by default. See draw_networkx() for more |
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full-featured drawing that allows title, axis labels etc. |
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Parameters |
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---------- |
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G : graph |
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A networkx graph |
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pos : dictionary, optional |
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A dictionary with nodes as keys and positions as values. |
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If not specified a spring layout positioning will be computed. |
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See :py:mod:`networkx.drawing.layout` for functions that |
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compute node positions. |
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ax : Matplotlib Axes object, optional |
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Draw the graph in specified Matplotlib axes. |
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kwds : optional keywords |
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See networkx.draw_networkx() for a description of optional keywords. |
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Examples |
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-------- |
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>>> G = nx.dodecahedral_graph() |
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>>> nx.draw(G) |
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>>> nx.draw(G, pos=nx.spring_layout(G)) # use spring layout |
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|
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See Also |
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-------- |
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draw_networkx |
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draw_networkx_nodes |
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draw_networkx_edges |
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draw_networkx_labels |
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draw_networkx_edge_labels |
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Notes |
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----- |
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This function has the same name as pylab.draw and pyplot.draw |
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so beware when using `from networkx import *` |
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since you might overwrite the pylab.draw function. |
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With pyplot use |
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>>> import matplotlib.pyplot as plt |
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>>> G = nx.dodecahedral_graph() |
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>>> nx.draw(G) # networkx draw() |
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>>> plt.draw() # pyplot draw() |
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Also see the NetworkX drawing examples at |
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https://networkx.org/documentation/latest/auto_examples/index.html |
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""" |
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import matplotlib.pyplot as plt |
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if ax is None: |
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cf = plt.gcf() |
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else: |
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cf = ax.get_figure() |
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cf.set_facecolor("w") |
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if ax is None: |
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if cf.axes: |
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ax = cf.gca() |
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else: |
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ax = cf.add_axes((0, 0, 1, 1)) |
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if "with_labels" not in kwds: |
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kwds["with_labels"] = "labels" in kwds |
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draw_networkx(G, pos=pos, ax=ax, **kwds) |
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ax.set_axis_off() |
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plt.draw_if_interactive() |
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return |
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def draw_networkx(G, pos=None, arrows=None, with_labels=True, **kwds): |
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r"""Draw the graph G using Matplotlib. |
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Draw the graph with Matplotlib with options for node positions, |
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labeling, titles, and many other drawing features. |
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See draw() for simple drawing without labels or axes. |
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Parameters |
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---------- |
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G : graph |
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A networkx graph |
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pos : dictionary, optional |
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A dictionary with nodes as keys and positions as values. |
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If not specified a spring layout positioning will be computed. |
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See :py:mod:`networkx.drawing.layout` for functions that |
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compute node positions. |
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arrows : bool or None, optional (default=None) |
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If `None`, directed graphs draw arrowheads with |
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`~matplotlib.patches.FancyArrowPatch`, while undirected graphs draw edges |
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via `~matplotlib.collections.LineCollection` for speed. |
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If `True`, draw arrowheads with FancyArrowPatches (bendable and stylish). |
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If `False`, draw edges using LineCollection (linear and fast). |
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For directed graphs, if True draw arrowheads. |
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Note: Arrows will be the same color as edges. |
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arrowstyle : str (default='-\|>' for directed graphs) |
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For directed graphs, choose the style of the arrowsheads. |
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For undirected graphs default to '-' |
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See `matplotlib.patches.ArrowStyle` for more options. |
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arrowsize : int or list (default=10) |
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For directed graphs, choose the size of the arrow head's length and |
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width. A list of values can be passed in to assign a different size for arrow head's length and width. |
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See `matplotlib.patches.FancyArrowPatch` for attribute `mutation_scale` |
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for more info. |
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with_labels : bool (default=True) |
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Set to True to draw labels on the nodes. |
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ax : Matplotlib Axes object, optional |
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Draw the graph in the specified Matplotlib axes. |
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nodelist : list (default=list(G)) |
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Draw only specified nodes |
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edgelist : list (default=list(G.edges())) |
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Draw only specified edges |
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node_size : scalar or array (default=300) |
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Size of nodes. If an array is specified it must be the |
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same length as nodelist. |
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node_color : color or array of colors (default='#1f78b4') |
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Node color. Can be a single color or a sequence of colors with the same |
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length as nodelist. Color can be string or rgb (or rgba) tuple of |
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floats from 0-1. If numeric values are specified they will be |
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mapped to colors using the cmap and vmin,vmax parameters. See |
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matplotlib.scatter for more details. |
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node_shape : string (default='o') |
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The shape of the node. Specification is as matplotlib.scatter |
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marker, one of 'so^>v<dph8'. |
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alpha : float or None (default=None) |
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The node and edge transparency |
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cmap : Matplotlib colormap, optional |
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Colormap for mapping intensities of nodes |
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vmin,vmax : float, optional |
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Minimum and maximum for node colormap scaling |
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linewidths : scalar or sequence (default=1.0) |
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Line width of symbol border |
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width : float or array of floats (default=1.0) |
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Line width of edges |
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edge_color : color or array of colors (default='k') |
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Edge color. Can be a single color or a sequence of colors with the same |
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length as edgelist. Color can be string or rgb (or rgba) tuple of |
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floats from 0-1. If numeric values are specified they will be |
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mapped to colors using the edge_cmap and edge_vmin,edge_vmax parameters. |
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edge_cmap : Matplotlib colormap, optional |
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Colormap for mapping intensities of edges |
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edge_vmin,edge_vmax : floats, optional |
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Minimum and maximum for edge colormap scaling |
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style : string (default=solid line) |
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Edge line style e.g.: '-', '--', '-.', ':' |
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|
or words like 'solid' or 'dashed'. |
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(See `matplotlib.patches.FancyArrowPatch`: `linestyle`) |
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labels : dictionary (default=None) |
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Node labels in a dictionary of text labels keyed by node |
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font_size : int (default=12 for nodes, 10 for edges) |
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Font size for text labels |
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font_color : color (default='k' black) |
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Font color string. Color can be string or rgb (or rgba) tuple of |
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floats from 0-1. |
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font_weight : string (default='normal') |
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Font weight |
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font_family : string (default='sans-serif') |
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Font family |
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label : string, optional |
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Label for graph legend |
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kwds : optional keywords |
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See networkx.draw_networkx_nodes(), networkx.draw_networkx_edges(), and |
|
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networkx.draw_networkx_labels() for a description of optional keywords. |
|
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|
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|
Notes |
|
|
----- |
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|
For directed graphs, arrows are drawn at the head end. Arrows can be |
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|
turned off with keyword arrows=False. |
|
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|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.dodecahedral_graph() |
|
|
>>> nx.draw(G) |
|
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>>> nx.draw(G, pos=nx.spring_layout(G)) # use spring layout |
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|
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>>> import matplotlib.pyplot as plt |
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>>> limits = plt.axis("off") # turn off axis |
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|
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|
Also see the NetworkX drawing examples at |
|
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https://networkx.org/documentation/latest/auto_examples/index.html |
|
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|
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|
See Also |
|
|
-------- |
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|
draw |
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|
draw_networkx_nodes |
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draw_networkx_edges |
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|
draw_networkx_labels |
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draw_networkx_edge_labels |
|
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""" |
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from inspect import signature |
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import matplotlib.pyplot as plt |
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valid_node_kwds = signature(draw_networkx_nodes).parameters.keys() |
|
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valid_edge_kwds = signature(draw_networkx_edges).parameters.keys() |
|
|
valid_label_kwds = signature(draw_networkx_labels).parameters.keys() |
|
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valid_kwds = (valid_node_kwds | valid_edge_kwds | valid_label_kwds) - { |
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"G", |
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"pos", |
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"arrows", |
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"with_labels", |
|
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} |
|
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|
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if any(k not in valid_kwds for k in kwds): |
|
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invalid_args = ", ".join([k for k in kwds if k not in valid_kwds]) |
|
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raise ValueError(f"Received invalid argument(s): {invalid_args}") |
|
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node_kwds = {k: v for k, v in kwds.items() if k in valid_node_kwds} |
|
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edge_kwds = {k: v for k, v in kwds.items() if k in valid_edge_kwds} |
|
|
label_kwds = {k: v for k, v in kwds.items() if k in valid_label_kwds} |
|
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|
|
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if pos is None: |
|
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pos = nx.drawing.spring_layout(G) |
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draw_networkx_nodes(G, pos, **node_kwds) |
|
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draw_networkx_edges(G, pos, arrows=arrows, **edge_kwds) |
|
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if with_labels: |
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draw_networkx_labels(G, pos, **label_kwds) |
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plt.draw_if_interactive() |
|
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|
|
|
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|
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def draw_networkx_nodes( |
|
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G, |
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pos, |
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nodelist=None, |
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node_size=300, |
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node_color="#1f78b4", |
|
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node_shape="o", |
|
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alpha=None, |
|
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cmap=None, |
|
|
vmin=None, |
|
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vmax=None, |
|
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ax=None, |
|
|
linewidths=None, |
|
|
edgecolors=None, |
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label=None, |
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|
margins=None, |
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): |
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"""Draw the nodes of the graph G. |
|
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|
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|
This draws only the nodes of the graph G. |
|
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|
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|
Parameters |
|
|
---------- |
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|
G : graph |
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|
A networkx graph |
|
|
|
|
|
pos : dictionary |
|
|
A dictionary with nodes as keys and positions as values. |
|
|
Positions should be sequences of length 2. |
|
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|
|
|
ax : Matplotlib Axes object, optional |
|
|
Draw the graph in the specified Matplotlib axes. |
|
|
|
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|
nodelist : list (default list(G)) |
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|
Draw only specified nodes |
|
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|
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|
node_size : scalar or array (default=300) |
|
|
Size of nodes. If an array it must be the same length as nodelist. |
|
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|
|
|
node_color : color or array of colors (default='#1f78b4') |
|
|
Node color. Can be a single color or a sequence of colors with the same |
|
|
length as nodelist. Color can be string or rgb (or rgba) tuple of |
|
|
floats from 0-1. If numeric values are specified they will be |
|
|
mapped to colors using the cmap and vmin,vmax parameters. See |
|
|
matplotlib.scatter for more details. |
|
|
|
|
|
node_shape : string (default='o') |
|
|
The shape of the node. Specification is as matplotlib.scatter |
|
|
marker, one of 'so^>v<dph8'. |
|
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|
|
|
alpha : float or array of floats (default=None) |
|
|
The node transparency. This can be a single alpha value, |
|
|
in which case it will be applied to all the nodes of color. Otherwise, |
|
|
if it is an array, the elements of alpha will be applied to the colors |
|
|
in order (cycling through alpha multiple times if necessary). |
|
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|
|
|
cmap : Matplotlib colormap (default=None) |
|
|
Colormap for mapping intensities of nodes |
|
|
|
|
|
vmin,vmax : floats or None (default=None) |
|
|
Minimum and maximum for node colormap scaling |
|
|
|
|
|
linewidths : [None | scalar | sequence] (default=1.0) |
|
|
Line width of symbol border |
|
|
|
|
|
edgecolors : [None | scalar | sequence] (default = node_color) |
|
|
Colors of node borders. Can be a single color or a sequence of colors with the |
|
|
same length as nodelist. Color can be string or rgb (or rgba) tuple of floats |
|
|
from 0-1. If numeric values are specified they will be mapped to colors |
|
|
using the cmap and vmin,vmax parameters. See `~matplotlib.pyplot.scatter` for more details. |
|
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|
|
|
label : [None | string] |
|
|
Label for legend |
|
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|
|
|
margins : float or 2-tuple, optional |
|
|
Sets the padding for axis autoscaling. Increase margin to prevent |
|
|
clipping for nodes that are near the edges of an image. Values should |
|
|
be in the range ``[0, 1]``. See :meth:`matplotlib.axes.Axes.margins` |
|
|
for details. The default is `None`, which uses the Matplotlib default. |
|
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|
|
|
Returns |
|
|
------- |
|
|
matplotlib.collections.PathCollection |
|
|
`PathCollection` of the nodes. |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.dodecahedral_graph() |
|
|
>>> nodes = nx.draw_networkx_nodes(G, pos=nx.spring_layout(G)) |
|
|
|
|
|
Also see the NetworkX drawing examples at |
|
|
https://networkx.org/documentation/latest/auto_examples/index.html |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
draw |
|
|
draw_networkx |
|
|
draw_networkx_edges |
|
|
draw_networkx_labels |
|
|
draw_networkx_edge_labels |
|
|
""" |
|
|
from collections.abc import Iterable |
|
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|
|
|
import matplotlib as mpl |
|
|
import matplotlib.collections |
|
|
import matplotlib.pyplot as plt |
|
|
import numpy as np |
|
|
|
|
|
if ax is None: |
|
|
ax = plt.gca() |
|
|
|
|
|
if nodelist is None: |
|
|
nodelist = list(G) |
|
|
|
|
|
if len(nodelist) == 0: |
|
|
return mpl.collections.PathCollection(None) |
|
|
|
|
|
try: |
|
|
xy = np.asarray([pos[v] for v in nodelist]) |
|
|
except KeyError as err: |
|
|
raise nx.NetworkXError(f"Node {err} has no position.") from err |
|
|
|
|
|
if isinstance(alpha, Iterable): |
|
|
node_color = apply_alpha(node_color, alpha, nodelist, cmap, vmin, vmax) |
|
|
alpha = None |
|
|
|
|
|
node_collection = ax.scatter( |
|
|
xy[:, 0], |
|
|
xy[:, 1], |
|
|
s=node_size, |
|
|
c=node_color, |
|
|
marker=node_shape, |
|
|
cmap=cmap, |
|
|
vmin=vmin, |
|
|
vmax=vmax, |
|
|
alpha=alpha, |
|
|
linewidths=linewidths, |
|
|
edgecolors=edgecolors, |
|
|
label=label, |
|
|
) |
|
|
ax.tick_params( |
|
|
axis="both", |
|
|
which="both", |
|
|
bottom=False, |
|
|
left=False, |
|
|
labelbottom=False, |
|
|
labelleft=False, |
|
|
) |
|
|
|
|
|
if margins is not None: |
|
|
if isinstance(margins, Iterable): |
|
|
ax.margins(*margins) |
|
|
else: |
|
|
ax.margins(margins) |
|
|
|
|
|
node_collection.set_zorder(2) |
|
|
return node_collection |
|
|
|
|
|
|
|
|
def draw_networkx_edges( |
|
|
G, |
|
|
pos, |
|
|
edgelist=None, |
|
|
width=1.0, |
|
|
edge_color="k", |
|
|
style="solid", |
|
|
alpha=None, |
|
|
arrowstyle=None, |
|
|
arrowsize=10, |
|
|
edge_cmap=None, |
|
|
edge_vmin=None, |
|
|
edge_vmax=None, |
|
|
ax=None, |
|
|
arrows=None, |
|
|
label=None, |
|
|
node_size=300, |
|
|
nodelist=None, |
|
|
node_shape="o", |
|
|
connectionstyle="arc3", |
|
|
min_source_margin=0, |
|
|
min_target_margin=0, |
|
|
): |
|
|
r"""Draw the edges of the graph G. |
|
|
|
|
|
This draws only the edges of the graph G. |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
pos : dictionary |
|
|
A dictionary with nodes as keys and positions as values. |
|
|
Positions should be sequences of length 2. |
|
|
|
|
|
edgelist : collection of edge tuples (default=G.edges()) |
|
|
Draw only specified edges |
|
|
|
|
|
width : float or array of floats (default=1.0) |
|
|
Line width of edges |
|
|
|
|
|
edge_color : color or array of colors (default='k') |
|
|
Edge color. Can be a single color or a sequence of colors with the same |
|
|
length as edgelist. Color can be string or rgb (or rgba) tuple of |
|
|
floats from 0-1. If numeric values are specified they will be |
|
|
mapped to colors using the edge_cmap and edge_vmin,edge_vmax parameters. |
|
|
|
|
|
style : string or array of strings (default='solid') |
|
|
Edge line style e.g.: '-', '--', '-.', ':' |
|
|
or words like 'solid' or 'dashed'. |
|
|
Can be a single style or a sequence of styles with the same |
|
|
length as the edge list. |
|
|
If less styles than edges are given the styles will cycle. |
|
|
If more styles than edges are given the styles will be used sequentially |
|
|
and not be exhausted. |
|
|
Also, `(offset, onoffseq)` tuples can be used as style instead of a strings. |
|
|
(See `matplotlib.patches.FancyArrowPatch`: `linestyle`) |
|
|
|
|
|
alpha : float or array of floats (default=None) |
|
|
The edge transparency. This can be a single alpha value, |
|
|
in which case it will be applied to all specified edges. Otherwise, |
|
|
if it is an array, the elements of alpha will be applied to the colors |
|
|
in order (cycling through alpha multiple times if necessary). |
|
|
|
|
|
edge_cmap : Matplotlib colormap, optional |
|
|
Colormap for mapping intensities of edges |
|
|
|
|
|
edge_vmin,edge_vmax : floats, optional |
|
|
Minimum and maximum for edge colormap scaling |
|
|
|
|
|
ax : Matplotlib Axes object, optional |
|
|
Draw the graph in the specified Matplotlib axes. |
|
|
|
|
|
arrows : bool or None, optional (default=None) |
|
|
If `None`, directed graphs draw arrowheads with |
|
|
`~matplotlib.patches.FancyArrowPatch`, while undirected graphs draw edges |
|
|
via `~matplotlib.collections.LineCollection` for speed. |
|
|
If `True`, draw arrowheads with FancyArrowPatches (bendable and stylish). |
|
|
If `False`, draw edges using LineCollection (linear and fast). |
|
|
|
|
|
Note: Arrowheads will be the same color as edges. |
|
|
|
|
|
arrowstyle : str (default='-\|>' for directed graphs) |
|
|
For directed graphs and `arrows==True` defaults to '-\|>', |
|
|
For undirected graphs default to '-'. |
|
|
|
|
|
See `matplotlib.patches.ArrowStyle` for more options. |
|
|
|
|
|
arrowsize : int (default=10) |
|
|
For directed graphs, choose the size of the arrow head's length and |
|
|
width. See `matplotlib.patches.FancyArrowPatch` for attribute |
|
|
`mutation_scale` for more info. |
|
|
|
|
|
connectionstyle : string (default="arc3") |
|
|
Pass the connectionstyle parameter to create curved arc of rounding |
|
|
radius rad. For example, connectionstyle='arc3,rad=0.2'. |
|
|
See `matplotlib.patches.ConnectionStyle` and |
|
|
`matplotlib.patches.FancyArrowPatch` for more info. |
|
|
|
|
|
node_size : scalar or array (default=300) |
|
|
Size of nodes. Though the nodes are not drawn with this function, the |
|
|
node size is used in determining edge positioning. |
|
|
|
|
|
nodelist : list, optional (default=G.nodes()) |
|
|
This provides the node order for the `node_size` array (if it is an array). |
|
|
|
|
|
node_shape : string (default='o') |
|
|
The marker used for nodes, used in determining edge positioning. |
|
|
Specification is as a `matplotlib.markers` marker, e.g. one of 'so^>v<dph8'. |
|
|
|
|
|
label : None or string |
|
|
Label for legend |
|
|
|
|
|
min_source_margin : int (default=0) |
|
|
The minimum margin (gap) at the beginning of the edge at the source. |
|
|
|
|
|
min_target_margin : int (default=0) |
|
|
The minimum margin (gap) at the end of the edge at the target. |
|
|
|
|
|
Returns |
|
|
------- |
|
|
matplotlib.collections.LineCollection or a list of matplotlib.patches.FancyArrowPatch |
|
|
If ``arrows=True``, a list of FancyArrowPatches is returned. |
|
|
If ``arrows=False``, a LineCollection is returned. |
|
|
If ``arrows=None`` (the default), then a LineCollection is returned if |
|
|
`G` is undirected, otherwise returns a list of FancyArrowPatches. |
|
|
|
|
|
Notes |
|
|
----- |
|
|
For directed graphs, arrows are drawn at the head end. Arrows can be |
|
|
turned off with keyword arrows=False or by passing an arrowstyle without |
|
|
an arrow on the end. |
|
|
|
|
|
Be sure to include `node_size` as a keyword argument; arrows are |
|
|
drawn considering the size of nodes. |
|
|
|
|
|
Self-loops are always drawn with `~matplotlib.patches.FancyArrowPatch` |
|
|
regardless of the value of `arrows` or whether `G` is directed. |
|
|
When ``arrows=False`` or ``arrows=None`` and `G` is undirected, the |
|
|
FancyArrowPatches corresponding to the self-loops are not explicitly |
|
|
returned. They should instead be accessed via the ``Axes.patches`` |
|
|
attribute (see examples). |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.dodecahedral_graph() |
|
|
>>> edges = nx.draw_networkx_edges(G, pos=nx.spring_layout(G)) |
|
|
|
|
|
>>> G = nx.DiGraph() |
|
|
>>> G.add_edges_from([(1, 2), (1, 3), (2, 3)]) |
|
|
>>> arcs = nx.draw_networkx_edges(G, pos=nx.spring_layout(G)) |
|
|
>>> alphas = [0.3, 0.4, 0.5] |
|
|
>>> for i, arc in enumerate(arcs): # change alpha values of arcs |
|
|
... arc.set_alpha(alphas[i]) |
|
|
|
|
|
The FancyArrowPatches corresponding to self-loops are not always |
|
|
returned, but can always be accessed via the ``patches`` attribute of the |
|
|
`matplotlib.Axes` object. |
|
|
|
|
|
>>> import matplotlib.pyplot as plt |
|
|
>>> fig, ax = plt.subplots() |
|
|
>>> G = nx.Graph([(0, 1), (0, 0)]) # Self-loop at node 0 |
|
|
>>> edge_collection = nx.draw_networkx_edges(G, pos=nx.circular_layout(G), ax=ax) |
|
|
>>> self_loop_fap = ax.patches[0] |
|
|
|
|
|
Also see the NetworkX drawing examples at |
|
|
https://networkx.org/documentation/latest/auto_examples/index.html |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
draw |
|
|
draw_networkx |
|
|
draw_networkx_nodes |
|
|
draw_networkx_labels |
|
|
draw_networkx_edge_labels |
|
|
|
|
|
""" |
|
|
import matplotlib as mpl |
|
|
import matplotlib.collections |
|
|
import matplotlib.colors |
|
|
import matplotlib.patches |
|
|
import matplotlib.path |
|
|
import matplotlib.pyplot as plt |
|
|
import numpy as np |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
use_linecollection = not G.is_directed() |
|
|
if arrows in (True, False): |
|
|
use_linecollection = not arrows |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
if use_linecollection and any( |
|
|
[ |
|
|
arrowstyle is not None, |
|
|
arrowsize != 10, |
|
|
connectionstyle != "arc3", |
|
|
min_source_margin != 0, |
|
|
min_target_margin != 0, |
|
|
] |
|
|
): |
|
|
import warnings |
|
|
|
|
|
msg = ( |
|
|
"\n\nThe {0} keyword argument is not applicable when drawing edges\n" |
|
|
"with LineCollection.\n\n" |
|
|
"To make this warning go away, either specify `arrows=True` to\n" |
|
|
"force FancyArrowPatches or use the default value for {0}.\n" |
|
|
"Note that using FancyArrowPatches may be slow for large graphs.\n" |
|
|
) |
|
|
if arrowstyle is not None: |
|
|
msg = msg.format("arrowstyle") |
|
|
if arrowsize != 10: |
|
|
msg = msg.format("arrowsize") |
|
|
if connectionstyle != "arc3": |
|
|
msg = msg.format("connectionstyle") |
|
|
if min_source_margin != 0: |
|
|
msg = msg.format("min_source_margin") |
|
|
if min_target_margin != 0: |
|
|
msg = msg.format("min_target_margin") |
|
|
warnings.warn(msg, category=UserWarning, stacklevel=2) |
|
|
|
|
|
if arrowstyle == None: |
|
|
if G.is_directed(): |
|
|
arrowstyle = "-|>" |
|
|
else: |
|
|
arrowstyle = "-" |
|
|
|
|
|
if ax is None: |
|
|
ax = plt.gca() |
|
|
|
|
|
if edgelist is None: |
|
|
edgelist = list(G.edges()) |
|
|
|
|
|
if len(edgelist) == 0: |
|
|
return [] |
|
|
|
|
|
if nodelist is None: |
|
|
nodelist = list(G.nodes()) |
|
|
|
|
|
|
|
|
if edge_color is None: |
|
|
edge_color = "k" |
|
|
edgelist_tuple = list(map(tuple, edgelist)) |
|
|
|
|
|
|
|
|
edge_pos = np.asarray([(pos[e[0]], pos[e[1]]) for e in edgelist]) |
|
|
|
|
|
|
|
|
|
|
|
if ( |
|
|
np.iterable(edge_color) |
|
|
and (len(edge_color) == len(edge_pos)) |
|
|
and np.all([isinstance(c, Number) for c in edge_color]) |
|
|
): |
|
|
if edge_cmap is not None: |
|
|
assert isinstance(edge_cmap, mpl.colors.Colormap) |
|
|
else: |
|
|
edge_cmap = plt.get_cmap() |
|
|
if edge_vmin is None: |
|
|
edge_vmin = min(edge_color) |
|
|
if edge_vmax is None: |
|
|
edge_vmax = max(edge_color) |
|
|
color_normal = mpl.colors.Normalize(vmin=edge_vmin, vmax=edge_vmax) |
|
|
edge_color = [edge_cmap(color_normal(e)) for e in edge_color] |
|
|
|
|
|
def _draw_networkx_edges_line_collection(): |
|
|
edge_collection = mpl.collections.LineCollection( |
|
|
edge_pos, |
|
|
colors=edge_color, |
|
|
linewidths=width, |
|
|
antialiaseds=(1,), |
|
|
linestyle=style, |
|
|
alpha=alpha, |
|
|
) |
|
|
edge_collection.set_cmap(edge_cmap) |
|
|
edge_collection.set_clim(edge_vmin, edge_vmax) |
|
|
edge_collection.set_zorder(1) |
|
|
edge_collection.set_label(label) |
|
|
ax.add_collection(edge_collection) |
|
|
|
|
|
return edge_collection |
|
|
|
|
|
def _draw_networkx_edges_fancy_arrow_patch(): |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
def to_marker_edge(marker_size, marker): |
|
|
if marker in "s^>v<d": |
|
|
return np.sqrt(2 * marker_size) / 2 |
|
|
else: |
|
|
return np.sqrt(marker_size) / 2 |
|
|
|
|
|
|
|
|
arrow_collection = [] |
|
|
|
|
|
if isinstance(arrowsize, list): |
|
|
if len(arrowsize) != len(edge_pos): |
|
|
raise ValueError("arrowsize should have the same length as edgelist") |
|
|
else: |
|
|
mutation_scale = arrowsize |
|
|
|
|
|
base_connection_style = mpl.patches.ConnectionStyle(connectionstyle) |
|
|
|
|
|
|
|
|
|
|
|
max_nodesize = np.array(node_size).max() |
|
|
|
|
|
def _connectionstyle(posA, posB, *args, **kwargs): |
|
|
|
|
|
if np.all(posA == posB): |
|
|
|
|
|
|
|
|
|
|
|
selfloop_ht = 0.005 * max_nodesize if h == 0 else h |
|
|
|
|
|
|
|
|
data_loc = ax.transData.inverted().transform(posA) |
|
|
v_shift = 0.1 * selfloop_ht |
|
|
h_shift = v_shift * 0.5 |
|
|
|
|
|
path = [ |
|
|
|
|
|
data_loc + np.asarray([0, v_shift]), |
|
|
|
|
|
data_loc + np.asarray([h_shift, v_shift]), |
|
|
data_loc + np.asarray([h_shift, 0]), |
|
|
data_loc, |
|
|
|
|
|
data_loc + np.asarray([-h_shift, 0]), |
|
|
data_loc + np.asarray([-h_shift, v_shift]), |
|
|
data_loc + np.asarray([0, v_shift]), |
|
|
] |
|
|
|
|
|
ret = mpl.path.Path(ax.transData.transform(path), [1, 4, 4, 4, 4, 4, 4]) |
|
|
|
|
|
else: |
|
|
ret = base_connection_style(posA, posB, *args, **kwargs) |
|
|
|
|
|
return ret |
|
|
|
|
|
|
|
|
arrow_colors = mpl.colors.colorConverter.to_rgba_array(edge_color, alpha) |
|
|
for i, (src, dst) in zip(fancy_edges_indices, edge_pos): |
|
|
x1, y1 = src |
|
|
x2, y2 = dst |
|
|
shrink_source = 0 |
|
|
shrink_target = 0 |
|
|
|
|
|
if isinstance(arrowsize, list): |
|
|
|
|
|
mutation_scale = arrowsize[i] |
|
|
|
|
|
if np.iterable(node_size): |
|
|
source, target = edgelist[i][:2] |
|
|
source_node_size = node_size[nodelist.index(source)] |
|
|
target_node_size = node_size[nodelist.index(target)] |
|
|
shrink_source = to_marker_edge(source_node_size, node_shape) |
|
|
shrink_target = to_marker_edge(target_node_size, node_shape) |
|
|
else: |
|
|
shrink_source = shrink_target = to_marker_edge(node_size, node_shape) |
|
|
|
|
|
if shrink_source < min_source_margin: |
|
|
shrink_source = min_source_margin |
|
|
|
|
|
if shrink_target < min_target_margin: |
|
|
shrink_target = min_target_margin |
|
|
|
|
|
if len(arrow_colors) > i: |
|
|
arrow_color = arrow_colors[i] |
|
|
elif len(arrow_colors) == 1: |
|
|
arrow_color = arrow_colors[0] |
|
|
else: |
|
|
arrow_color = arrow_colors[i % len(arrow_colors)] |
|
|
|
|
|
if np.iterable(width): |
|
|
if len(width) > i: |
|
|
line_width = width[i] |
|
|
else: |
|
|
line_width = width[i % len(width)] |
|
|
else: |
|
|
line_width = width |
|
|
|
|
|
if ( |
|
|
np.iterable(style) |
|
|
and not isinstance(style, str) |
|
|
and not isinstance(style, tuple) |
|
|
): |
|
|
if len(style) > i: |
|
|
linestyle = style[i] |
|
|
else: |
|
|
linestyle = style[i % len(style)] |
|
|
else: |
|
|
linestyle = style |
|
|
|
|
|
arrow = mpl.patches.FancyArrowPatch( |
|
|
(x1, y1), |
|
|
(x2, y2), |
|
|
arrowstyle=arrowstyle, |
|
|
shrinkA=shrink_source, |
|
|
shrinkB=shrink_target, |
|
|
mutation_scale=mutation_scale, |
|
|
color=arrow_color, |
|
|
linewidth=line_width, |
|
|
connectionstyle=_connectionstyle, |
|
|
linestyle=linestyle, |
|
|
zorder=1, |
|
|
) |
|
|
|
|
|
arrow_collection.append(arrow) |
|
|
ax.add_patch(arrow) |
|
|
|
|
|
return arrow_collection |
|
|
|
|
|
|
|
|
minx = np.amin(np.ravel(edge_pos[:, :, 0])) |
|
|
maxx = np.amax(np.ravel(edge_pos[:, :, 0])) |
|
|
miny = np.amin(np.ravel(edge_pos[:, :, 1])) |
|
|
maxy = np.amax(np.ravel(edge_pos[:, :, 1])) |
|
|
w = maxx - minx |
|
|
h = maxy - miny |
|
|
|
|
|
|
|
|
if use_linecollection: |
|
|
edge_viz_obj = _draw_networkx_edges_line_collection() |
|
|
|
|
|
selfloops_to_draw = [loop for loop in nx.selfloop_edges(G) if loop in edgelist] |
|
|
if selfloops_to_draw: |
|
|
fancy_edges_indices = [ |
|
|
edgelist_tuple.index(loop) for loop in selfloops_to_draw |
|
|
] |
|
|
edge_pos = np.asarray([(pos[e[0]], pos[e[1]]) for e in selfloops_to_draw]) |
|
|
arrowstyle = "-" |
|
|
_draw_networkx_edges_fancy_arrow_patch() |
|
|
else: |
|
|
fancy_edges_indices = range(len(edgelist)) |
|
|
edge_viz_obj = _draw_networkx_edges_fancy_arrow_patch() |
|
|
|
|
|
|
|
|
padx, pady = 0.05 * w, 0.05 * h |
|
|
corners = (minx - padx, miny - pady), (maxx + padx, maxy + pady) |
|
|
ax.update_datalim(corners) |
|
|
ax.autoscale_view() |
|
|
|
|
|
ax.tick_params( |
|
|
axis="both", |
|
|
which="both", |
|
|
bottom=False, |
|
|
left=False, |
|
|
labelbottom=False, |
|
|
labelleft=False, |
|
|
) |
|
|
|
|
|
return edge_viz_obj |
|
|
|
|
|
|
|
|
def draw_networkx_labels( |
|
|
G, |
|
|
pos, |
|
|
labels=None, |
|
|
font_size=12, |
|
|
font_color="k", |
|
|
font_family="sans-serif", |
|
|
font_weight="normal", |
|
|
alpha=None, |
|
|
bbox=None, |
|
|
horizontalalignment="center", |
|
|
verticalalignment="center", |
|
|
ax=None, |
|
|
clip_on=True, |
|
|
): |
|
|
"""Draw node labels on the graph G. |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
pos : dictionary |
|
|
A dictionary with nodes as keys and positions as values. |
|
|
Positions should be sequences of length 2. |
|
|
|
|
|
labels : dictionary (default={n: n for n in G}) |
|
|
Node labels in a dictionary of text labels keyed by node. |
|
|
Node-keys in labels should appear as keys in `pos`. |
|
|
If needed use: `{n:lab for n,lab in labels.items() if n in pos}` |
|
|
|
|
|
font_size : int (default=12) |
|
|
Font size for text labels |
|
|
|
|
|
font_color : color (default='k' black) |
|
|
Font color string. Color can be string or rgb (or rgba) tuple of |
|
|
floats from 0-1. |
|
|
|
|
|
font_weight : string (default='normal') |
|
|
Font weight |
|
|
|
|
|
font_family : string (default='sans-serif') |
|
|
Font family |
|
|
|
|
|
alpha : float or None (default=None) |
|
|
The text transparency |
|
|
|
|
|
bbox : Matplotlib bbox, (default is Matplotlib's ax.text default) |
|
|
Specify text box properties (e.g. shape, color etc.) for node labels. |
|
|
|
|
|
horizontalalignment : string (default='center') |
|
|
Horizontal alignment {'center', 'right', 'left'} |
|
|
|
|
|
verticalalignment : string (default='center') |
|
|
Vertical alignment {'center', 'top', 'bottom', 'baseline', 'center_baseline'} |
|
|
|
|
|
ax : Matplotlib Axes object, optional |
|
|
Draw the graph in the specified Matplotlib axes. |
|
|
|
|
|
clip_on : bool (default=True) |
|
|
Turn on clipping of node labels at axis boundaries |
|
|
|
|
|
Returns |
|
|
------- |
|
|
dict |
|
|
`dict` of labels keyed on the nodes |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.dodecahedral_graph() |
|
|
>>> labels = nx.draw_networkx_labels(G, pos=nx.spring_layout(G)) |
|
|
|
|
|
Also see the NetworkX drawing examples at |
|
|
https://networkx.org/documentation/latest/auto_examples/index.html |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
draw |
|
|
draw_networkx |
|
|
draw_networkx_nodes |
|
|
draw_networkx_edges |
|
|
draw_networkx_edge_labels |
|
|
""" |
|
|
import matplotlib.pyplot as plt |
|
|
|
|
|
if ax is None: |
|
|
ax = plt.gca() |
|
|
|
|
|
if labels is None: |
|
|
labels = {n: n for n in G.nodes()} |
|
|
|
|
|
text_items = {} |
|
|
for n, label in labels.items(): |
|
|
(x, y) = pos[n] |
|
|
if not isinstance(label, str): |
|
|
label = str(label) |
|
|
t = ax.text( |
|
|
x, |
|
|
y, |
|
|
label, |
|
|
size=font_size, |
|
|
color=font_color, |
|
|
family=font_family, |
|
|
weight=font_weight, |
|
|
alpha=alpha, |
|
|
horizontalalignment=horizontalalignment, |
|
|
verticalalignment=verticalalignment, |
|
|
transform=ax.transData, |
|
|
bbox=bbox, |
|
|
clip_on=clip_on, |
|
|
) |
|
|
text_items[n] = t |
|
|
|
|
|
ax.tick_params( |
|
|
axis="both", |
|
|
which="both", |
|
|
bottom=False, |
|
|
left=False, |
|
|
labelbottom=False, |
|
|
labelleft=False, |
|
|
) |
|
|
|
|
|
return text_items |
|
|
|
|
|
|
|
|
def draw_networkx_edge_labels( |
|
|
G, |
|
|
pos, |
|
|
edge_labels=None, |
|
|
label_pos=0.5, |
|
|
font_size=10, |
|
|
font_color="k", |
|
|
font_family="sans-serif", |
|
|
font_weight="normal", |
|
|
alpha=None, |
|
|
bbox=None, |
|
|
horizontalalignment="center", |
|
|
verticalalignment="center", |
|
|
ax=None, |
|
|
rotate=True, |
|
|
clip_on=True, |
|
|
): |
|
|
"""Draw edge labels. |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
pos : dictionary |
|
|
A dictionary with nodes as keys and positions as values. |
|
|
Positions should be sequences of length 2. |
|
|
|
|
|
edge_labels : dictionary (default=None) |
|
|
Edge labels in a dictionary of labels keyed by edge two-tuple. |
|
|
Only labels for the keys in the dictionary are drawn. |
|
|
|
|
|
label_pos : float (default=0.5) |
|
|
Position of edge label along edge (0=head, 0.5=center, 1=tail) |
|
|
|
|
|
font_size : int (default=10) |
|
|
Font size for text labels |
|
|
|
|
|
font_color : color (default='k' black) |
|
|
Font color string. Color can be string or rgb (or rgba) tuple of |
|
|
floats from 0-1. |
|
|
|
|
|
font_weight : string (default='normal') |
|
|
Font weight |
|
|
|
|
|
font_family : string (default='sans-serif') |
|
|
Font family |
|
|
|
|
|
alpha : float or None (default=None) |
|
|
The text transparency |
|
|
|
|
|
bbox : Matplotlib bbox, optional |
|
|
Specify text box properties (e.g. shape, color etc.) for edge labels. |
|
|
Default is {boxstyle='round', ec=(1.0, 1.0, 1.0), fc=(1.0, 1.0, 1.0)}. |
|
|
|
|
|
horizontalalignment : string (default='center') |
|
|
Horizontal alignment {'center', 'right', 'left'} |
|
|
|
|
|
verticalalignment : string (default='center') |
|
|
Vertical alignment {'center', 'top', 'bottom', 'baseline', 'center_baseline'} |
|
|
|
|
|
ax : Matplotlib Axes object, optional |
|
|
Draw the graph in the specified Matplotlib axes. |
|
|
|
|
|
rotate : bool (default=True) |
|
|
Rotate edge labels to lie parallel to edges |
|
|
|
|
|
clip_on : bool (default=True) |
|
|
Turn on clipping of edge labels at axis boundaries |
|
|
|
|
|
Returns |
|
|
------- |
|
|
dict |
|
|
`dict` of labels keyed by edge |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.dodecahedral_graph() |
|
|
>>> edge_labels = nx.draw_networkx_edge_labels(G, pos=nx.spring_layout(G)) |
|
|
|
|
|
Also see the NetworkX drawing examples at |
|
|
https://networkx.org/documentation/latest/auto_examples/index.html |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
draw |
|
|
draw_networkx |
|
|
draw_networkx_nodes |
|
|
draw_networkx_edges |
|
|
draw_networkx_labels |
|
|
""" |
|
|
import matplotlib.pyplot as plt |
|
|
import numpy as np |
|
|
|
|
|
if ax is None: |
|
|
ax = plt.gca() |
|
|
if edge_labels is None: |
|
|
labels = {(u, v): d for u, v, d in G.edges(data=True)} |
|
|
else: |
|
|
labels = edge_labels |
|
|
|
|
|
try: |
|
|
(u, v) = next(iter(labels)) |
|
|
except ValueError as err: |
|
|
raise nx.NetworkXError( |
|
|
"draw_networkx_edge_labels does not support multiedges." |
|
|
) from err |
|
|
except StopIteration: |
|
|
pass |
|
|
|
|
|
text_items = {} |
|
|
for (n1, n2), label in labels.items(): |
|
|
(x1, y1) = pos[n1] |
|
|
(x2, y2) = pos[n2] |
|
|
(x, y) = ( |
|
|
x1 * label_pos + x2 * (1.0 - label_pos), |
|
|
y1 * label_pos + y2 * (1.0 - label_pos), |
|
|
) |
|
|
|
|
|
if rotate: |
|
|
|
|
|
angle = np.arctan2(y2 - y1, x2 - x1) / (2.0 * np.pi) * 360 |
|
|
|
|
|
if angle > 90: |
|
|
angle -= 180 |
|
|
if angle < -90: |
|
|
angle += 180 |
|
|
|
|
|
xy = np.array((x, y)) |
|
|
trans_angle = ax.transData.transform_angles( |
|
|
np.array((angle,)), xy.reshape((1, 2)) |
|
|
)[0] |
|
|
else: |
|
|
trans_angle = 0.0 |
|
|
|
|
|
if bbox is None: |
|
|
bbox = {"boxstyle": "round", "ec": (1.0, 1.0, 1.0), "fc": (1.0, 1.0, 1.0)} |
|
|
if not isinstance(label, str): |
|
|
label = str(label) |
|
|
|
|
|
t = ax.text( |
|
|
x, |
|
|
y, |
|
|
label, |
|
|
size=font_size, |
|
|
color=font_color, |
|
|
family=font_family, |
|
|
weight=font_weight, |
|
|
alpha=alpha, |
|
|
horizontalalignment=horizontalalignment, |
|
|
verticalalignment=verticalalignment, |
|
|
rotation=trans_angle, |
|
|
transform=ax.transData, |
|
|
bbox=bbox, |
|
|
zorder=1, |
|
|
clip_on=clip_on, |
|
|
) |
|
|
text_items[(n1, n2)] = t |
|
|
|
|
|
ax.tick_params( |
|
|
axis="both", |
|
|
which="both", |
|
|
bottom=False, |
|
|
left=False, |
|
|
labelbottom=False, |
|
|
labelleft=False, |
|
|
) |
|
|
|
|
|
return text_items |
|
|
|
|
|
|
|
|
def draw_circular(G, **kwargs): |
|
|
"""Draw the graph `G` with a circular layout. |
|
|
|
|
|
This is a convenience function equivalent to:: |
|
|
|
|
|
nx.draw(G, pos=nx.circular_layout(G), **kwargs) |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
kwargs : optional keywords |
|
|
See `draw_networkx` for a description of optional keywords. |
|
|
|
|
|
Notes |
|
|
----- |
|
|
The layout is computed each time this function is called. For |
|
|
repeated drawing it is much more efficient to call |
|
|
`~networkx.drawing.layout.circular_layout` directly and reuse the result:: |
|
|
|
|
|
>>> G = nx.complete_graph(5) |
|
|
>>> pos = nx.circular_layout(G) |
|
|
>>> nx.draw(G, pos=pos) # Draw the original graph |
|
|
>>> # Draw a subgraph, reusing the same node positions |
|
|
>>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red") |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.path_graph(5) |
|
|
>>> nx.draw_circular(G) |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
:func:`~networkx.drawing.layout.circular_layout` |
|
|
""" |
|
|
draw(G, circular_layout(G), **kwargs) |
|
|
|
|
|
|
|
|
def draw_kamada_kawai(G, **kwargs): |
|
|
"""Draw the graph `G` with a Kamada-Kawai force-directed layout. |
|
|
|
|
|
This is a convenience function equivalent to:: |
|
|
|
|
|
nx.draw(G, pos=nx.kamada_kawai_layout(G), **kwargs) |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
kwargs : optional keywords |
|
|
See `draw_networkx` for a description of optional keywords. |
|
|
|
|
|
Notes |
|
|
----- |
|
|
The layout is computed each time this function is called. |
|
|
For repeated drawing it is much more efficient to call |
|
|
`~networkx.drawing.layout.kamada_kawai_layout` directly and reuse the |
|
|
result:: |
|
|
|
|
|
>>> G = nx.complete_graph(5) |
|
|
>>> pos = nx.kamada_kawai_layout(G) |
|
|
>>> nx.draw(G, pos=pos) # Draw the original graph |
|
|
>>> # Draw a subgraph, reusing the same node positions |
|
|
>>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red") |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.path_graph(5) |
|
|
>>> nx.draw_kamada_kawai(G) |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
:func:`~networkx.drawing.layout.kamada_kawai_layout` |
|
|
""" |
|
|
draw(G, kamada_kawai_layout(G), **kwargs) |
|
|
|
|
|
|
|
|
def draw_random(G, **kwargs): |
|
|
"""Draw the graph `G` with a random layout. |
|
|
|
|
|
This is a convenience function equivalent to:: |
|
|
|
|
|
nx.draw(G, pos=nx.random_layout(G), **kwargs) |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
kwargs : optional keywords |
|
|
See `draw_networkx` for a description of optional keywords. |
|
|
|
|
|
Notes |
|
|
----- |
|
|
The layout is computed each time this function is called. |
|
|
For repeated drawing it is much more efficient to call |
|
|
`~networkx.drawing.layout.random_layout` directly and reuse the result:: |
|
|
|
|
|
>>> G = nx.complete_graph(5) |
|
|
>>> pos = nx.random_layout(G) |
|
|
>>> nx.draw(G, pos=pos) # Draw the original graph |
|
|
>>> # Draw a subgraph, reusing the same node positions |
|
|
>>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red") |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.lollipop_graph(4, 3) |
|
|
>>> nx.draw_random(G) |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
:func:`~networkx.drawing.layout.random_layout` |
|
|
""" |
|
|
draw(G, random_layout(G), **kwargs) |
|
|
|
|
|
|
|
|
def draw_spectral(G, **kwargs): |
|
|
"""Draw the graph `G` with a spectral 2D layout. |
|
|
|
|
|
This is a convenience function equivalent to:: |
|
|
|
|
|
nx.draw(G, pos=nx.spectral_layout(G), **kwargs) |
|
|
|
|
|
For more information about how node positions are determined, see |
|
|
`~networkx.drawing.layout.spectral_layout`. |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
kwargs : optional keywords |
|
|
See `draw_networkx` for a description of optional keywords. |
|
|
|
|
|
Notes |
|
|
----- |
|
|
The layout is computed each time this function is called. |
|
|
For repeated drawing it is much more efficient to call |
|
|
`~networkx.drawing.layout.spectral_layout` directly and reuse the result:: |
|
|
|
|
|
>>> G = nx.complete_graph(5) |
|
|
>>> pos = nx.spectral_layout(G) |
|
|
>>> nx.draw(G, pos=pos) # Draw the original graph |
|
|
>>> # Draw a subgraph, reusing the same node positions |
|
|
>>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red") |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.path_graph(5) |
|
|
>>> nx.draw_spectral(G) |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
:func:`~networkx.drawing.layout.spectral_layout` |
|
|
""" |
|
|
draw(G, spectral_layout(G), **kwargs) |
|
|
|
|
|
|
|
|
def draw_spring(G, **kwargs): |
|
|
"""Draw the graph `G` with a spring layout. |
|
|
|
|
|
This is a convenience function equivalent to:: |
|
|
|
|
|
nx.draw(G, pos=nx.spring_layout(G), **kwargs) |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
kwargs : optional keywords |
|
|
See `draw_networkx` for a description of optional keywords. |
|
|
|
|
|
Notes |
|
|
----- |
|
|
`~networkx.drawing.layout.spring_layout` is also the default layout for |
|
|
`draw`, so this function is equivalent to `draw`. |
|
|
|
|
|
The layout is computed each time this function is called. |
|
|
For repeated drawing it is much more efficient to call |
|
|
`~networkx.drawing.layout.spring_layout` directly and reuse the result:: |
|
|
|
|
|
>>> G = nx.complete_graph(5) |
|
|
>>> pos = nx.spring_layout(G) |
|
|
>>> nx.draw(G, pos=pos) # Draw the original graph |
|
|
>>> # Draw a subgraph, reusing the same node positions |
|
|
>>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red") |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.path_graph(20) |
|
|
>>> nx.draw_spring(G) |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
draw |
|
|
:func:`~networkx.drawing.layout.spring_layout` |
|
|
""" |
|
|
draw(G, spring_layout(G), **kwargs) |
|
|
|
|
|
|
|
|
def draw_shell(G, nlist=None, **kwargs): |
|
|
"""Draw networkx graph `G` with shell layout. |
|
|
|
|
|
This is a convenience function equivalent to:: |
|
|
|
|
|
nx.draw(G, pos=nx.shell_layout(G, nlist=nlist), **kwargs) |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A networkx graph |
|
|
|
|
|
nlist : list of list of nodes, optional |
|
|
A list containing lists of nodes representing the shells. |
|
|
Default is `None`, meaning all nodes are in a single shell. |
|
|
See `~networkx.drawing.layout.shell_layout` for details. |
|
|
|
|
|
kwargs : optional keywords |
|
|
See `draw_networkx` for a description of optional keywords. |
|
|
|
|
|
Notes |
|
|
----- |
|
|
The layout is computed each time this function is called. |
|
|
For repeated drawing it is much more efficient to call |
|
|
`~networkx.drawing.layout.shell_layout` directly and reuse the result:: |
|
|
|
|
|
>>> G = nx.complete_graph(5) |
|
|
>>> pos = nx.shell_layout(G) |
|
|
>>> nx.draw(G, pos=pos) # Draw the original graph |
|
|
>>> # Draw a subgraph, reusing the same node positions |
|
|
>>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red") |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.path_graph(4) |
|
|
>>> shells = [[0], [1, 2, 3]] |
|
|
>>> nx.draw_shell(G, nlist=shells) |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
:func:`~networkx.drawing.layout.shell_layout` |
|
|
""" |
|
|
draw(G, shell_layout(G, nlist=nlist), **kwargs) |
|
|
|
|
|
|
|
|
def draw_planar(G, **kwargs): |
|
|
"""Draw a planar networkx graph `G` with planar layout. |
|
|
|
|
|
This is a convenience function equivalent to:: |
|
|
|
|
|
nx.draw(G, pos=nx.planar_layout(G), **kwargs) |
|
|
|
|
|
Parameters |
|
|
---------- |
|
|
G : graph |
|
|
A planar networkx graph |
|
|
|
|
|
kwargs : optional keywords |
|
|
See `draw_networkx` for a description of optional keywords. |
|
|
|
|
|
Raises |
|
|
------ |
|
|
NetworkXException |
|
|
When `G` is not planar |
|
|
|
|
|
Notes |
|
|
----- |
|
|
The layout is computed each time this function is called. |
|
|
For repeated drawing it is much more efficient to call |
|
|
`~networkx.drawing.layout.planar_layout` directly and reuse the result:: |
|
|
|
|
|
>>> G = nx.path_graph(5) |
|
|
>>> pos = nx.planar_layout(G) |
|
|
>>> nx.draw(G, pos=pos) # Draw the original graph |
|
|
>>> # Draw a subgraph, reusing the same node positions |
|
|
>>> nx.draw(G.subgraph([0, 1, 2]), pos=pos, node_color="red") |
|
|
|
|
|
Examples |
|
|
-------- |
|
|
>>> G = nx.path_graph(4) |
|
|
>>> nx.draw_planar(G) |
|
|
|
|
|
See Also |
|
|
-------- |
|
|
:func:`~networkx.drawing.layout.planar_layout` |
|
|
""" |
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draw(G, planar_layout(G), **kwargs) |
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def apply_alpha(colors, alpha, elem_list, cmap=None, vmin=None, vmax=None): |
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"""Apply an alpha (or list of alphas) to the colors provided. |
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Parameters |
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---------- |
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colors : color string or array of floats (default='r') |
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Color of element. Can be a single color format string, |
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or a sequence of colors with the same length as nodelist. |
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If numeric values are specified they will be mapped to |
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colors using the cmap and vmin,vmax parameters. See |
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matplotlib.scatter for more details. |
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alpha : float or array of floats |
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Alpha values for elements. This can be a single alpha value, in |
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which case it will be applied to all the elements of color. Otherwise, |
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if it is an array, the elements of alpha will be applied to the colors |
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in order (cycling through alpha multiple times if necessary). |
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elem_list : array of networkx objects |
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The list of elements which are being colored. These could be nodes, |
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edges or labels. |
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cmap : matplotlib colormap |
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Color map for use if colors is a list of floats corresponding to points |
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on a color mapping. |
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vmin, vmax : float |
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Minimum and maximum values for normalizing colors if a colormap is used |
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Returns |
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------- |
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rgba_colors : numpy ndarray |
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Array containing RGBA format values for each of the node colours. |
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""" |
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from itertools import cycle, islice |
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import matplotlib as mpl |
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import matplotlib.cm |
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import matplotlib.colors |
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import numpy as np |
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if len(colors) == len(elem_list) and isinstance(colors[0], Number): |
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mapper = mpl.cm.ScalarMappable(cmap=cmap) |
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mapper.set_clim(vmin, vmax) |
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rgba_colors = mapper.to_rgba(colors) |
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else: |
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try: |
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rgba_colors = np.array([mpl.colors.colorConverter.to_rgba(colors)]) |
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except ValueError: |
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rgba_colors = np.array( |
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[mpl.colors.colorConverter.to_rgba(color) for color in colors] |
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) |
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try: |
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if len(alpha) > len(rgba_colors) or rgba_colors.size == len(elem_list): |
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rgba_colors = np.resize(rgba_colors, (len(elem_list), 4)) |
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rgba_colors[1:, 0] = rgba_colors[0, 0] |
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rgba_colors[1:, 1] = rgba_colors[0, 1] |
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rgba_colors[1:, 2] = rgba_colors[0, 2] |
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rgba_colors[:, 3] = list(islice(cycle(alpha), len(rgba_colors))) |
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except TypeError: |
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rgba_colors[:, -1] = alpha |
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return rgba_colors |
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