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#pragma once
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#include <pybind11/numpy.h>
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#include "common.h"
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PYBIND11_WARNING_PUSH
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PYBIND11_WARNING_DISABLE_MSVC(5054)
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#if defined(__MINGW32__)
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PYBIND11_WARNING_DISABLE_GCC("-Wmaybe-uninitialized")
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#endif
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#include <Eigen/Core>
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#include <Eigen/SparseCore>
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PYBIND11_WARNING_POP
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static_assert(EIGEN_VERSION_AT_LEAST(3, 2, 7),
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"Eigen matrix support in pybind11 requires Eigen >= 3.2.7");
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PYBIND11_NAMESPACE_BEGIN(PYBIND11_NAMESPACE)
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PYBIND11_WARNING_DISABLE_MSVC(4127)
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using EigenDStride = Eigen::Stride<Eigen::Dynamic, Eigen::Dynamic>;
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template <typename MatrixType>
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using EigenDRef = Eigen::Ref<MatrixType, 0, EigenDStride>;
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template <typename MatrixType>
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using EigenDMap = Eigen::Map<MatrixType, 0, EigenDStride>;
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PYBIND11_NAMESPACE_BEGIN(detail)
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#if EIGEN_VERSION_AT_LEAST(3, 3, 0)
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using EigenIndex = Eigen::Index;
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template <typename Scalar, int Flags, typename StorageIndex>
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using EigenMapSparseMatrix = Eigen::Map<Eigen::SparseMatrix<Scalar, Flags, StorageIndex>>;
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#else
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using EigenIndex = EIGEN_DEFAULT_DENSE_INDEX_TYPE;
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template <typename Scalar, int Flags, typename StorageIndex>
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using EigenMapSparseMatrix = Eigen::MappedSparseMatrix<Scalar, Flags, StorageIndex>;
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#endif
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template <typename T>
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using is_eigen_dense_map = all_of<is_template_base_of<Eigen::DenseBase, T>,
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std::is_base_of<Eigen::MapBase<T, Eigen::ReadOnlyAccessors>, T>>;
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template <typename T>
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using is_eigen_mutable_map = std::is_base_of<Eigen::MapBase<T, Eigen::WriteAccessors>, T>;
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template <typename T>
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using is_eigen_dense_plain
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= all_of<negation<is_eigen_dense_map<T>>, is_template_base_of<Eigen::PlainObjectBase, T>>;
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template <typename T>
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using is_eigen_sparse = is_template_base_of<Eigen::SparseMatrixBase, T>;
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template <typename T>
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using is_eigen_other
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= all_of<is_template_base_of<Eigen::EigenBase, T>,
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negation<any_of<is_eigen_dense_map<T>, is_eigen_dense_plain<T>, is_eigen_sparse<T>>>>;
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template <bool EigenRowMajor>
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struct EigenConformable {
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bool conformable = false;
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EigenIndex rows = 0, cols = 0;
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EigenDStride stride{0, 0};
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bool negativestrides = false;
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EigenConformable(bool fits = false) : conformable{fits} {}
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EigenConformable(EigenIndex r, EigenIndex c, EigenIndex rstride, EigenIndex cstride)
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: conformable{true}, rows{r}, cols{c},
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stride{EigenRowMajor ? (rstride > 0 ? rstride : 0)
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: (cstride > 0 ? cstride : 0) ,
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EigenRowMajor ? (cstride > 0 ? cstride : 0)
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: (rstride > 0 ? rstride : 0) },
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negativestrides{rstride < 0 || cstride < 0} {}
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EigenConformable(EigenIndex r, EigenIndex c, EigenIndex stride)
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: EigenConformable(r, c, r == 1 ? c * stride : stride, c == 1 ? r : r * stride) {}
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template <typename props>
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bool stride_compatible() const {
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if (negativestrides) {
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return false;
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}
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if (rows == 0 || cols == 0) {
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return true;
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}
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return (props::inner_stride == Eigen::Dynamic || props::inner_stride == stride.inner()
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|| (EigenRowMajor ? cols : rows) == 1)
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&& (props::outer_stride == Eigen::Dynamic || props::outer_stride == stride.outer()
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|| (EigenRowMajor ? rows : cols) == 1);
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}
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operator bool() const { return conformable; }
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};
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template <typename Type>
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struct eigen_extract_stride {
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using type = Type;
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};
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template <typename PlainObjectType, int MapOptions, typename StrideType>
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struct eigen_extract_stride<Eigen::Map<PlainObjectType, MapOptions, StrideType>> {
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using type = StrideType;
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};
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template <typename PlainObjectType, int Options, typename StrideType>
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struct eigen_extract_stride<Eigen::Ref<PlainObjectType, Options, StrideType>> {
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using type = StrideType;
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};
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template <typename Type_>
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struct EigenProps {
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using Type = Type_;
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using Scalar = typename Type::Scalar;
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using StrideType = typename eigen_extract_stride<Type>::type;
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static constexpr EigenIndex rows = Type::RowsAtCompileTime, cols = Type::ColsAtCompileTime,
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size = Type::SizeAtCompileTime;
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static constexpr bool row_major = Type::IsRowMajor,
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vector
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= Type::IsVectorAtCompileTime,
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fixed_rows = rows != Eigen::Dynamic, fixed_cols = cols != Eigen::Dynamic,
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fixed = size != Eigen::Dynamic,
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dynamic = !fixed_rows && !fixed_cols;
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template <EigenIndex i, EigenIndex ifzero>
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using if_zero = std::integral_constant<EigenIndex, i == 0 ? ifzero : i>;
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static constexpr EigenIndex inner_stride
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= if_zero<StrideType::InnerStrideAtCompileTime, 1>::value,
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outer_stride = if_zero < StrideType::OuterStrideAtCompileTime,
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vector ? size
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: row_major ? cols
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: rows > ::value;
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static constexpr bool dynamic_stride
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= inner_stride == Eigen::Dynamic && outer_stride == Eigen::Dynamic;
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static constexpr bool requires_row_major
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= !dynamic_stride && !vector && (row_major ? inner_stride : outer_stride) == 1;
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static constexpr bool requires_col_major
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= !dynamic_stride && !vector && (row_major ? outer_stride : inner_stride) == 1;
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static EigenConformable<row_major> conformable(const array &a) {
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const auto dims = a.ndim();
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if (dims < 1 || dims > 2) {
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return false;
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}
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if (dims == 2) {
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EigenIndex np_rows = a.shape(0), np_cols = a.shape(1),
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np_rstride = a.strides(0) / static_cast<ssize_t>(sizeof(Scalar)),
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np_cstride = a.strides(1) / static_cast<ssize_t>(sizeof(Scalar));
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if ((fixed_rows && np_rows != rows) || (fixed_cols && np_cols != cols)) {
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return false;
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}
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return {np_rows, np_cols, np_rstride, np_cstride};
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}
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const EigenIndex n = a.shape(0),
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stride = a.strides(0) / static_cast<ssize_t>(sizeof(Scalar));
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if (vector) {
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if (fixed && size != n) {
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return false;
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}
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return {rows == 1 ? 1 : n, cols == 1 ? 1 : n, stride};
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}
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if (fixed) {
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return false;
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}
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if (fixed_cols) {
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if (cols != n) {
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return false;
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}
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return {1, n, stride};
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}
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if (fixed_rows && rows != n) {
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return false;
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}
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return {n, 1, stride};
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}
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static constexpr bool show_writeable
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= is_eigen_dense_map<Type>::value && is_eigen_mutable_map<Type>::value;
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static constexpr bool show_order = is_eigen_dense_map<Type>::value;
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static constexpr bool show_c_contiguous = show_order && requires_row_major;
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static constexpr bool show_f_contiguous
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= !show_c_contiguous && show_order && requires_col_major;
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static constexpr auto descriptor
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= const_name("numpy.ndarray[") + npy_format_descriptor<Scalar>::name + const_name("[")
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+ const_name<fixed_rows>(const_name<(size_t) rows>(), const_name("m")) + const_name(", ")
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+ const_name<fixed_cols>(const_name<(size_t) cols>(), const_name("n")) + const_name("]")
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+
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const_name<show_writeable>(", flags.writeable", "")
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+ const_name<show_c_contiguous>(", flags.c_contiguous", "")
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+ const_name<show_f_contiguous>(", flags.f_contiguous", "") + const_name("]");
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};
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template <typename props>
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handle
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eigen_array_cast(typename props::Type const &src, handle base = handle(), bool writeable = true) {
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constexpr ssize_t elem_size = sizeof(typename props::Scalar);
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array a;
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if (props::vector) {
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a = array({src.size()}, {elem_size * src.innerStride()}, src.data(), base);
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} else {
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a = array({src.rows(), src.cols()},
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{elem_size * src.rowStride(), elem_size * src.colStride()},
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src.data(),
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base);
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}
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if (!writeable) {
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array_proxy(a.ptr())->flags &= ~detail::npy_api::NPY_ARRAY_WRITEABLE_;
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}
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return a.release();
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}
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template <typename props, typename Type>
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handle eigen_ref_array(Type &src, handle parent = none()) {
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return eigen_array_cast<props>(src, parent, !std::is_const<Type>::value);
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}
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template <typename props, typename Type, typename = enable_if_t<is_eigen_dense_plain<Type>::value>>
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handle eigen_encapsulate(Type *src) {
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capsule base(src, [](void *o) { delete static_cast<Type *>(o); });
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return eigen_ref_array<props>(*src, base);
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}
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template <typename Type>
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struct type_caster<Type, enable_if_t<is_eigen_dense_plain<Type>::value>> {
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using Scalar = typename Type::Scalar;
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static_assert(!std::is_pointer<Scalar>::value,
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PYBIND11_EIGEN_MESSAGE_POINTER_TYPES_ARE_NOT_SUPPORTED);
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using props = EigenProps<Type>;
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bool load(handle src, bool convert) {
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if (!convert && !isinstance<array_t<Scalar>>(src)) {
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return false;
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}
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auto buf = array::ensure(src);
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if (!buf) {
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return false;
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}
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auto dims = buf.ndim();
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if (dims < 1 || dims > 2) {
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return false;
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}
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auto fits = props::conformable(buf);
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if (!fits) {
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return false;
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}
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value = Type(fits.rows, fits.cols);
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auto ref = reinterpret_steal<array>(eigen_ref_array<props>(value));
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if (dims == 1) {
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ref = ref.squeeze();
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} else if (ref.ndim() == 1) {
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buf = buf.squeeze();
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}
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int result = detail::npy_api::get().PyArray_CopyInto_(ref.ptr(), buf.ptr());
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if (result < 0) {
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PyErr_Clear();
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return false;
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}
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return true;
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}
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private:
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template <typename CType>
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static handle cast_impl(CType *src, return_value_policy policy, handle parent) {
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switch (policy) {
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case return_value_policy::take_ownership:
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case return_value_policy::automatic:
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return eigen_encapsulate<props>(src);
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case return_value_policy::move:
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return eigen_encapsulate<props>(new CType(std::move(*src)));
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case return_value_policy::copy:
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return eigen_array_cast<props>(*src);
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case return_value_policy::reference:
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case return_value_policy::automatic_reference:
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return eigen_ref_array<props>(*src);
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case return_value_policy::reference_internal:
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return eigen_ref_array<props>(*src, parent);
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default:
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throw cast_error("unhandled return_value_policy: should not happen!");
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};
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}
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public:
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static handle cast(Type &&src, return_value_policy , handle parent) {
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return cast_impl(&src, return_value_policy::move, parent);
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}
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static handle cast(const Type &&src, return_value_policy , handle parent) {
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return cast_impl(&src, return_value_policy::move, parent);
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}
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static handle cast(Type &src, return_value_policy policy, handle parent) {
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if (policy == return_value_policy::automatic
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|| policy == return_value_policy::automatic_reference) {
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policy = return_value_policy::copy;
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}
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return cast_impl(&src, policy, parent);
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}
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static handle cast(const Type &src, return_value_policy policy, handle parent) {
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if (policy == return_value_policy::automatic
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|| policy == return_value_policy::automatic_reference) {
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policy = return_value_policy::copy;
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}
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return cast(&src, policy, parent);
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}
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static handle cast(Type *src, return_value_policy policy, handle parent) {
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return cast_impl(src, policy, parent);
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}
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static handle cast(const Type *src, return_value_policy policy, handle parent) {
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return cast_impl(src, policy, parent);
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}
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static constexpr auto name = props::descriptor;
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operator Type *() { return &value; }
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operator Type &() { return value; }
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operator Type &&() && { return std::move(value); }
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template <typename T>
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using cast_op_type = movable_cast_op_type<T>;
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private:
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Type value;
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};
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|
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template <typename MapType>
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struct eigen_map_caster {
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|
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static_assert(!std::is_pointer<typename MapType::Scalar>::value,
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|
|
PYBIND11_EIGEN_MESSAGE_POINTER_TYPES_ARE_NOT_SUPPORTED);
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private:
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using props = EigenProps<MapType>;
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public:
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|
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|
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|
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static handle cast(const MapType &src, return_value_policy policy, handle parent) {
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switch (policy) {
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case return_value_policy::copy:
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return eigen_array_cast<props>(src);
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|
case return_value_policy::reference_internal:
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|
|
return eigen_array_cast<props>(src, parent, is_eigen_mutable_map<MapType>::value);
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|
|
case return_value_policy::reference:
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|
|
case return_value_policy::automatic:
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|
case return_value_policy::automatic_reference:
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|
|
return eigen_array_cast<props>(src, none(), is_eigen_mutable_map<MapType>::value);
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|
|
default:
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|
|
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|
|
pybind11_fail("Invalid return_value_policy for Eigen Map/Ref/Block type");
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|
|
}
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|
|
}
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|
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|
|
static constexpr auto name = props::descriptor;
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|
|
bool load(handle, bool) = delete;
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|
|
operator MapType() = delete;
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|
|
template <typename>
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|
|
using cast_op_type = MapType;
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|
|
};
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template <typename Type>
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struct type_caster<Type, enable_if_t<is_eigen_dense_map<Type>::value>> : eigen_map_caster<Type> {};
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template <typename PlainObjectType, typename StrideType>
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struct type_caster<
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Eigen::Ref<PlainObjectType, 0, StrideType>,
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enable_if_t<is_eigen_dense_map<Eigen::Ref<PlainObjectType, 0, StrideType>>::value>>
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: public eigen_map_caster<Eigen::Ref<PlainObjectType, 0, StrideType>> {
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private:
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using Type = Eigen::Ref<PlainObjectType, 0, StrideType>;
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using props = EigenProps<Type>;
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using Scalar = typename props::Scalar;
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static_assert(!std::is_pointer<Scalar>::value,
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PYBIND11_EIGEN_MESSAGE_POINTER_TYPES_ARE_NOT_SUPPORTED);
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using MapType = Eigen::Map<PlainObjectType, 0, StrideType>;
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using Array
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= array_t<Scalar,
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array::forcecast
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| ((props::row_major ? props::inner_stride : props::outer_stride) == 1
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? array::c_style
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: (props::row_major ? props::outer_stride : props::inner_stride) == 1
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? array::f_style
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: 0)>;
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static constexpr bool need_writeable = is_eigen_mutable_map<Type>::value;
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std::unique_ptr<MapType> map;
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std::unique_ptr<Type> ref;
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Array copy_or_ref;
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public:
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bool load(handle src, bool convert) {
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bool need_copy = !isinstance<Array>(src);
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EigenConformable<props::row_major> fits;
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if (!need_copy) {
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auto aref = reinterpret_borrow<Array>(src);
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if (aref && (!need_writeable || aref.writeable())) {
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fits = props::conformable(aref);
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if (!fits) {
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return false;
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}
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if (!fits.template stride_compatible<props>()) {
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need_copy = true;
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} else {
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copy_or_ref = std::move(aref);
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}
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} else {
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need_copy = true;
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}
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}
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if (need_copy) {
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if (!convert || need_writeable) {
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return false;
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}
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Array copy = Array::ensure(src);
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if (!copy) {
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return false;
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}
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fits = props::conformable(copy);
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if (!fits || !fits.template stride_compatible<props>()) {
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return false;
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}
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copy_or_ref = std::move(copy);
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loader_life_support::add_patient(copy_or_ref);
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}
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ref.reset();
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map.reset(new MapType(data(copy_or_ref),
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fits.rows,
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fits.cols,
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make_stride(fits.stride.outer(), fits.stride.inner())));
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ref.reset(new Type(*map));
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return true;
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}
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operator Type *() { return ref.get(); }
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operator Type &() { return *ref; }
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template <typename _T>
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using cast_op_type = pybind11::detail::cast_op_type<_T>;
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private:
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template <typename T = Type, enable_if_t<is_eigen_mutable_map<T>::value, int> = 0>
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Scalar *data(Array &a) {
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return a.mutable_data();
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}
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template <typename T = Type, enable_if_t<!is_eigen_mutable_map<T>::value, int> = 0>
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const Scalar *data(Array &a) {
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return a.data();
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}
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template <typename S>
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using stride_ctor_default = bool_constant<S::InnerStrideAtCompileTime != Eigen::Dynamic
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&& S::OuterStrideAtCompileTime != Eigen::Dynamic
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&& std::is_default_constructible<S>::value>;
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template <typename S>
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using stride_ctor_dual
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= bool_constant<!stride_ctor_default<S>::value
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&& std::is_constructible<S, EigenIndex, EigenIndex>::value>;
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template <typename S>
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using stride_ctor_outer
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= bool_constant<!any_of<stride_ctor_default<S>, stride_ctor_dual<S>>::value
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&& S::OuterStrideAtCompileTime == Eigen::Dynamic
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&& S::InnerStrideAtCompileTime != Eigen::Dynamic
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&& std::is_constructible<S, EigenIndex>::value>;
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template <typename S>
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using stride_ctor_inner
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= bool_constant<!any_of<stride_ctor_default<S>, stride_ctor_dual<S>>::value
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&& S::InnerStrideAtCompileTime == Eigen::Dynamic
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&& S::OuterStrideAtCompileTime != Eigen::Dynamic
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&& std::is_constructible<S, EigenIndex>::value>;
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template <typename S = StrideType, enable_if_t<stride_ctor_default<S>::value, int> = 0>
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static S make_stride(EigenIndex, EigenIndex) {
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return S();
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}
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template <typename S = StrideType, enable_if_t<stride_ctor_dual<S>::value, int> = 0>
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static S make_stride(EigenIndex outer, EigenIndex inner) {
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return S(outer, inner);
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}
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template <typename S = StrideType, enable_if_t<stride_ctor_outer<S>::value, int> = 0>
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static S make_stride(EigenIndex outer, EigenIndex) {
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return S(outer);
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}
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template <typename S = StrideType, enable_if_t<stride_ctor_inner<S>::value, int> = 0>
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static S make_stride(EigenIndex, EigenIndex inner) {
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return S(inner);
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}
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};
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template <typename Type>
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struct type_caster<Type, enable_if_t<is_eigen_other<Type>::value>> {
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static_assert(!std::is_pointer<typename Type::Scalar>::value,
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PYBIND11_EIGEN_MESSAGE_POINTER_TYPES_ARE_NOT_SUPPORTED);
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protected:
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using Matrix
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= Eigen::Matrix<typename Type::Scalar, Type::RowsAtCompileTime, Type::ColsAtCompileTime>;
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using props = EigenProps<Matrix>;
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public:
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static handle cast(const Type &src, return_value_policy , handle ) {
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handle h = eigen_encapsulate<props>(new Matrix(src));
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return h;
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}
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static handle cast(const Type *src, return_value_policy policy, handle parent) {
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return cast(*src, policy, parent);
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}
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static constexpr auto name = props::descriptor;
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bool load(handle, bool) = delete;
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operator Type() = delete;
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template <typename>
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using cast_op_type = Type;
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};
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template <typename Type>
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struct type_caster<Type, enable_if_t<is_eigen_sparse<Type>::value>> {
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using Scalar = typename Type::Scalar;
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static_assert(!std::is_pointer<Scalar>::value,
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PYBIND11_EIGEN_MESSAGE_POINTER_TYPES_ARE_NOT_SUPPORTED);
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using StorageIndex = remove_reference_t<decltype(*std::declval<Type>().outerIndexPtr())>;
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using Index = typename Type::Index;
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static constexpr bool rowMajor = Type::IsRowMajor;
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bool load(handle src, bool) {
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if (!src) {
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return false;
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}
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auto obj = reinterpret_borrow<object>(src);
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object sparse_module = module_::import("scipy.sparse");
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object matrix_type = sparse_module.attr(rowMajor ? "csr_matrix" : "csc_matrix");
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if (!type::handle_of(obj).is(matrix_type)) {
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try {
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obj = matrix_type(obj);
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} catch (const error_already_set &) {
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return false;
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}
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}
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auto values = array_t<Scalar>((object) obj.attr("data"));
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auto innerIndices = array_t<StorageIndex>((object) obj.attr("indices"));
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auto outerIndices = array_t<StorageIndex>((object) obj.attr("indptr"));
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auto shape = pybind11::tuple((pybind11::object) obj.attr("shape"));
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auto nnz = obj.attr("nnz").cast<Index>();
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if (!values || !innerIndices || !outerIndices) {
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return false;
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}
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value = EigenMapSparseMatrix<Scalar,
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Type::Flags &(Eigen::RowMajor | Eigen::ColMajor),
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StorageIndex>(shape[0].cast<Index>(),
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shape[1].cast<Index>(),
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std::move(nnz),
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outerIndices.mutable_data(),
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innerIndices.mutable_data(),
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values.mutable_data());
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return true;
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}
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static handle cast(const Type &src, return_value_policy , handle ) {
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const_cast<Type &>(src).makeCompressed();
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object matrix_type
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= module_::import("scipy.sparse").attr(rowMajor ? "csr_matrix" : "csc_matrix");
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array data(src.nonZeros(), src.valuePtr());
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array outerIndices((rowMajor ? src.rows() : src.cols()) + 1, src.outerIndexPtr());
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array innerIndices(src.nonZeros(), src.innerIndexPtr());
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return matrix_type(pybind11::make_tuple(
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std::move(data), std::move(innerIndices), std::move(outerIndices)),
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pybind11::make_tuple(src.rows(), src.cols()))
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.release();
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}
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PYBIND11_TYPE_CASTER(Type,
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const_name<(Type::IsRowMajor) != 0>("scipy.sparse.csr_matrix[",
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"scipy.sparse.csc_matrix[")
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+ npy_format_descriptor<Scalar>::name + const_name("]"));
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};
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PYBIND11_NAMESPACE_END(detail)
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PYBIND11_NAMESPACE_END(PYBIND11_NAMESPACE)
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