| # Large assets are hosted on Hugging Face or separate object storage. | |
| # weight/ contains pretrained checkpoints and paired configurations. | |
| # data/ contains downstream benchmark datasets and reference code. | |
| weight/ | |
| data/ | |
| !data/ | |
| !data/downstream/ | |
| !data/downstream/final_data/ | |
| !data/downstream/final_data/norman/ | |
| !data/downstream/final_data/norman/data_pyg/ | |
| !data/downstream/final_data/norman/data_pyg/cell_graphs.pkl | |
| !data/downstream/final_data/norman/splits/ | |
| !data/downstream/final_data/norman/splits/*.pkl | |
| # Binary files, archives, and caches. | |
| *.zip | |
| !data/downstream/final_data/drug_response_pytorch/drug_response_pytorch/data/GDSC/drug_graph_feat.zip | |
| !data/downstream/final_data/single_drug_response/optional_reference/GDSC/drug_graph_feat.zip | |
| *.tar | |
| *.tar.gz | |
| *.pth | |
| *.pkl | |
| !data/downstream/final_data/norman/data_pyg/cell_graphs.pkl | |
| !data/downstream/final_data/norman/splits/*.pkl | |
| *.ckpt | |
| __pycache__/ | |
| *.pyc | |
| .ipynb_checkpoints/ | |
| # Local environment files and credentials. | |
| .env | |
| *.local | |
| # BioMod model weights and their matching configuration are versioned on Hugging Face. | |
| !weight/ | |
| weight/* | |
| !weight/BioMod.pkl | |
| !weight/BioMod.pth | |