Resolve bundled resource defaults from script locations, preserve caller-relative path overrides, and require missing external pretraining or legacy inputs explicitly. Translate comments and docstrings to English, update command examples and documentation, and add a path helper for legacy reference code. Validation: 97 Python 3 files and 65 notebook code cells compiled; 12 existing utility tests passed; parser, example-command, resource-path and local-link checks passed. Two historical DeepCDR entrypoints retain Python 2 syntax. No training or model inference was run. This commit updates 90 source/documentation files and adds one helper; pretrained weights, paired PKL, raw datasets and other files are unchanged.
25 days ago
Upload BioMod with datasets and the 0810 checkpoint
Publish the BioMod source tree, model dependencies, complete downstream datasets, and the unchanged 0810 weight/configuration pair. Include the updated model implementation, shared training utilities, CPU utility tests, and English documentation. Exclude download caches, local environments, and OS metadata.
