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- license: apache-2.0
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ ---
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+ license: apache-2.0
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+ ---
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+
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+ ## About
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+
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+ DEER (Dense Enzyme Retrieval) provides a method for finding functionally related human-bacteria isozymes using learned dense vector representations (embeddings).
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+ This huggingface repository contains the pre-trained models to reproduce the results and apply DEER to discover isozymes.
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+
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+ The full codes are available at GitHub: https://github.com/WangJiuming/deer/tree/main.
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+
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+ ## Citation
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+ If you use the model in your research, please cite our paper with the following.
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+ ```
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+ @misc{liu2025Exploring,
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+ author={Liu, H. and Shen, J. and others},
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+ title={Exploring Functional Insights into the Human Gut Microbiome via the Structural Proteome},
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+ year={2025},
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+ note={Manuscript under revision}
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+ }
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+ ```