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b2c86fd | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 | {
"cells": [
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import sys\n",
"\n",
"sys.path.append(\"<REMOTE_USER_HOME>/BioAgentOS/biomni_release\")\n",
"\n",
"from biomni.agent import A1\n",
"\n",
"agent = A1(path=\"/dfs/project/bioagentos/biomni_data\", llm=\"claude-sonnet-4-20250514\")\n",
"\n",
"agent.go(\n",
" \"I have a plasmid plentiCRISPR v2 (sequence is at ./data/plentiCRISPR.txt). \"\n",
" \"I hope to clone a CRISPR sgRNA targeting human B2M into this plasmid. \"\n",
" \"Could you save the final assembied plasmid map into *.fasta and show step-by-step guidance\"\n",
" \" on how should I perform the cloning?\"\n",
")"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "biomni_env",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.11"
}
},
"nbformat": 4,
"nbformat_minor": 2
} |