Hugging Face's logo

czty
/
Beyond_Prompt-based_Retrieval

Model card Files
xet
 Community
Beyond_Prompt-based_Retrieval / Biomanus /experiments /ablation /scripts /blast_results.xml
czty's picture
czty
Add files using upload-large-folder tool
c6856c9 verified
Raw
History Blame Contribute Delete
7.79 kB
<?xml version="1.0" encoding="US-ASCII"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
 <BlastOutput_program>blastp</BlastOutput_program>
 <BlastOutput_version>BLASTP 2.17.0+</BlastOutput_version>
 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
 <BlastOutput_db>nr</BlastOutput_db>
 <BlastOutput_query-ID>Query_6872455</BlastOutput_query-ID>
 <BlastOutput_query-def>unnamed protein product</BlastOutput_query-def>
 <BlastOutput_query-len>87</BlastOutput_query-len>
 <BlastOutput_param>
 <Parameters>
 <Parameters_matrix>BLOSUM62</Parameters_matrix>
 <Parameters_expect>1e-10</Parameters_expect>
 <Parameters_gap-open>11</Parameters_gap-open>
 <Parameters_gap-extend>1</Parameters_gap-extend>
 <Parameters_filter>F</Parameters_filter>
 </Parameters>
 </BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
 <Iteration_iter-num>1</Iteration_iter-num>
 <Iteration_query-ID>Query_6872455</Iteration_query-ID>
 <Iteration_query-def>unnamed protein product</Iteration_query-def>
 <Iteration_query-len>87</Iteration_query-len>
<Iteration_hits>
<Hit>
 <Hit_num>1</Hit_num>
 <Hit_id>emb|CAO2603601.1|</Hit_id>
 <Hit_def>Potassium voltage-gated channel subfamily H member 2 [Lemmus lemmus]</Hit_def>
 <Hit_accession>CAO2603601</Hit_accession>
 <Hit_len>523</Hit_len>
 <Hit_hsps>
 <Hsp>
 <Hsp_num>1</Hsp_num>
 <Hsp_bit-score>185.652</Hsp_bit-score>
 <Hsp_score>470</Hsp_score>
 <Hsp_evalue>1.23873e-53</Hsp_evalue>
 <Hsp_query-from>1</Hsp_query-from>
 <Hsp_query-to>87</Hsp_query-to>
 <Hsp_hit-from>331</Hsp_hit-from>
 <Hsp_hit-to>417</Hsp_hit-to>
 <Hsp_query-frame>0</Hsp_query-frame>
 <Hsp_hit-frame>0</Hsp_hit-frame>
 <Hsp_identity>87</Hsp_identity>
 <Hsp_positive>87</Hsp_positive>
 <Hsp_gaps>0</Hsp_gaps>
 <Hsp_align-len>87</Hsp_align-len>
 <Hsp_qseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_qseq>
 <Hsp_hseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_hseq>
 <Hsp_midline>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_midline>
 </Hsp>
 </Hit_hsps>
</Hit>
<Hit>
 <Hit_num>2</Hit_num>
 <Hit_id>emb|CAO2603598.1|</Hit_id>
 <Hit_def>Potassium voltage-gated channel subfamily H member 6 [Lemmus lemmus]</Hit_def>
 <Hit_accession>CAO2603598</Hit_accession>
 <Hit_len>669</Hit_len>
 <Hit_hsps>
 <Hsp>
 <Hsp_num>1</Hsp_num>
 <Hsp_bit-score>187.963</Hsp_bit-score>
 <Hsp_score>476</Hsp_score>
 <Hsp_evalue>1.44969e-53</Hsp_evalue>
 <Hsp_query-from>1</Hsp_query-from>
 <Hsp_query-to>87</Hsp_query-to>
 <Hsp_hit-from>193</Hsp_hit-from>
 <Hsp_hit-to>279</Hsp_hit-to>
 <Hsp_query-frame>0</Hsp_query-frame>
 <Hsp_hit-frame>0</Hsp_hit-frame>
 <Hsp_identity>87</Hsp_identity>
 <Hsp_positive>87</Hsp_positive>
 <Hsp_gaps>0</Hsp_gaps>
 <Hsp_align-len>87</Hsp_align-len>
 <Hsp_qseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_qseq>
 <Hsp_hseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_hseq>
 <Hsp_midline>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_midline>
 </Hsp>
 </Hit_hsps>
</Hit>
<Hit>
 <Hit_num>3</Hit_num>
 <Hit_id>ref|XP_038962879.2|</Hit_id>
 <Hit_def>potassium voltage-gated channel subfamily H member 2 isoform X4 [Rattus norvegicus]</Hit_def>
 <Hit_accession>XP_038962879</Hit_accession>
 <Hit_len>592</Hit_len>
 <Hit_hsps>
 <Hsp>
 <Hsp_num>1</Hsp_num>
 <Hsp_bit-score>182.57</Hsp_bit-score>
 <Hsp_score>462</Hsp_score>
 <Hsp_evalue>5.4341e-52</Hsp_evalue>
 <Hsp_query-from>1</Hsp_query-from>
 <Hsp_query-to>87</Hsp_query-to>
 <Hsp_hit-from>287</Hsp_hit-from>
 <Hsp_hit-to>373</Hsp_hit-to>
 <Hsp_query-frame>0</Hsp_query-frame>
 <Hsp_hit-frame>0</Hsp_hit-frame>
 <Hsp_identity>87</Hsp_identity>
 <Hsp_positive>87</Hsp_positive>
 <Hsp_gaps>0</Hsp_gaps>
 <Hsp_align-len>87</Hsp_align-len>
 <Hsp_qseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_qseq>
 <Hsp_hseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_hseq>
 <Hsp_midline>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_midline>
 </Hsp>
 </Hit_hsps>
</Hit>
<Hit>
 <Hit_num>4</Hit_num>
 <Hit_id>emb|CAO2603599.1|</Hit_id>
 <Hit_def>Potassium voltage-gated channel subfamily H member 6 [Lemmus lemmus]</Hit_def>
 <Hit_accession>CAO2603599</Hit_accession>
 <Hit_len>721</Hit_len>
 <Hit_hsps>
 <Hsp>
 <Hsp_num>1</Hsp_num>
 <Hsp_bit-score>182.57</Hsp_bit-score>
 <Hsp_score>462</Hsp_score>
 <Hsp_evalue>3.01709e-51</Hsp_evalue>
 <Hsp_query-from>1</Hsp_query-from>
 <Hsp_query-to>87</Hsp_query-to>
 <Hsp_hit-from>193</Hsp_hit-from>
 <Hsp_hit-to>279</Hsp_hit-to>
 <Hsp_query-frame>0</Hsp_query-frame>
 <Hsp_hit-frame>0</Hsp_hit-frame>
 <Hsp_identity>87</Hsp_identity>
 <Hsp_positive>87</Hsp_positive>
 <Hsp_gaps>0</Hsp_gaps>
 <Hsp_align-len>87</Hsp_align-len>
 <Hsp_qseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_qseq>
 <Hsp_hseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_hseq>
 <Hsp_midline>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_midline>
 </Hsp>
 </Hit_hsps>
</Hit>
<Hit>
 <Hit_num>5</Hit_num>
 <Hit_id>ref|XP_005880163.1|</Hit_id>
 <Hit_def>PREDICTED: potassium voltage-gated channel subfamily H member 2 isoform X3 [Myotis brandtii]</Hit_def>
 <Hit_accession>XP_005880163</Hit_accession>
 <Hit_len>603</Hit_len>
 <Hit_hsps>
 <Hsp>
 <Hsp_num>1</Hsp_num>
 <Hsp_bit-score>180.644</Hsp_bit-score>
 <Hsp_score>457</Hsp_score>
 <Hsp_evalue>4.14918e-51</Hsp_evalue>
 <Hsp_query-from>1</Hsp_query-from>
 <Hsp_query-to>87</Hsp_query-to>
 <Hsp_hit-from>37</Hsp_hit-from>
 <Hsp_hit-to>123</Hsp_hit-to>
 <Hsp_query-frame>0</Hsp_query-frame>
 <Hsp_hit-frame>0</Hsp_hit-frame>
 <Hsp_identity>86</Hsp_identity>
 <Hsp_positive>87</Hsp_positive>
 <Hsp_gaps>0</Hsp_gaps>
 <Hsp_align-len>87</Hsp_align-len>
 <Hsp_qseq>KGDPFLASPTSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_qseq>
 <Hsp_hseq>KGDPFLASPSSDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_hseq>
 <Hsp_midline>KGDPFLASP+SDREIIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAA</Hsp_midline>
 </Hsp>
 </Hit_hsps>
</Hit>
</Iteration_hits>
 <Iteration_stat>
 <Statistics>
 <Statistics_db-num>1085735887</Statistics_db-num>
 <Statistics_db-len>411262408293</Statistics_db-len>
 <Statistics_hsp-len>0</Statistics_hsp-len>
 <Statistics_eff-space>0</Statistics_eff-space>
 <Statistics_kappa>0.041</Statistics_kappa>
 <Statistics_lambda>0.267</Statistics_lambda>
 <Statistics_entropy>0.14</Statistics_entropy>
 </Statistics>
 </Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>