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Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_70cr_GO_CC/gene_sets.gmt

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+COPII-coated ER To Golgi Transport Vesicle (GO:0030134)		TMED2	TMED5	VTI1B	TEX261	SEC24B	DDHD2	HLA-E	MCFD2	CNIH4	SEC24D	SEC23IP	STX5	TMED1	TMED9	LMAN2	VTI1A	KLHL12	ERGIC2	SEC23A	SEC31A	SLC30A5	GOSR2	LMAN1	SAR1B	GOLGA2	CD59	TMED4	SEC13	TMED6	CNIH1	USO1	HLA-B	YIF1B	SEC24A	ERGIC3	STX17	TMED3	LMAN2L	CTSZ	COL7A1	TMED7	HLA-A	SEC24C	CTSC	HLA-C	IER3IP1	SEC16A	B2M	F8	TMED10	ERGIC1	YIF1A
+Cul3-RING Ubiquitin Ligase Complex (GO:0031463)		KLHL9	KLHL21	KLHL8	SPOP	ENC1	GLMN	KLHL2	KLHL12	KLHL25	LZTR1	SPOPL	KLHL22	TNFAIP1	RBX1	PDCD6	KLHL24	PEF1	KCTD13	KEAP1	KCTD5	ZSWIM8	KCTD2	KLHL7	KLHL42	KBTBD7	KCTD10	KLHL20	KBTBD6
+Cul4-RING E3 Ubiquitin Ligase Complex (GO:0080008)		CUL4A	DCAF5	CUL4B	CRBN	GLMN	DCAF4	TRPC4AP	DCAF13	DCAF17	DDB1	RBX1	DCAF16	DDA1	DCAF6	DCAF15	DCAF8	CDKN1B	FBXW5	DCAF7	DCAF11	DDB2	DCAF10	DCAF12	WDTC1
+ER To Golgi Transport Vesicle Membrane (GO:0012507)		TMED2	VTI1B	SEC24B	SEC24D	HLA-E	MCFD2	CNIH4	STX5	TMED7	VTI1A	KLHL12	SEC23A	SAR1A	SEC23B	SEC31A	SLC30A5	GOSR2	LMAN1	SAR1B	CD59	SEC13	CNIH1	USO1	HLA-B	PDCD6	PEF1	SEC24A	HLA-A	SEC24C	HLA-C	CIDEB	SEC16A	B2M	TMED10
+Golgi Cisterna (GO:0031985)		GOSR1	B3GALT6	HID1	SLC10A7	SGMS1	B4GALT1	GOLPH3	GCC1	GOLGA2	RAB21	GOLGA8A	LLGL1	TMEM115	YIPF2	YIPF6	ATP2C1	TMEM59	SORL1	NECAB3	YIPF1	GOLPH3L	GOLGA5	TMEM87A	RAB30	HLA-A	STX16	RAB34	GOLT1A	GPR89A
+Golgi Lumen (GO:0005796)		FMOD	PCSK6	AGRN	SDC1	MUC15	PPIL2	APP	MUC1	SDC4	MMP14	PDGFA	GOLIM4	MUC20	SDF4	FURIN	DAG1	TGFB1	HSPG2	SDC2	MUC13	PODXL2	F8	RAB33B
+Golgi Membrane (GO:0000139)		VAC14	ARRB1	VTI1A	PAQR3	B4GALT5	UBIAD1	GLG1	LMAN1	SLC35A1	SLC35C1	STEAP2	COG3	GABARAPL2	B3GNT5	HLA-E	ZDHHC3	GORASP1	GOLGA3	GOLGA2	GALNT2	GLIPR2	ZDHHC9	RHOD	BET1	COPZ1	ARFGAP3	PCSK7	B2M	TMED10	SURF4	ARF3	GOSR1	HID1	TMED7	PDGFA	EXT2	ZDHHC13	FKTN	SGMS2	MAN1A2	TAPBP	HRAS	ZDHHC17	PYCARD	SLC35A3	PMEPA1	SREBF1	COG2	UGCG	ENTPD4	FURIN	SGMS1	STX5	AP1G2	B4GALT3	HS2ST1	LMAN2L	COPG1	B4GALT7	RAB33B	SACM1L	XYLT2	KDELR1	B3GAT3	ARFGEF1	ARFIP1	NDST1	GOLGA5	NRAS	AP1S2	PLEKHA3	STX6	ADAM17	EBAG9	ATP2C2	MAPK8IP3	GNAI3	RGP1	RAB6A	RFFL	COG7	ST3GAL3	RAB30	TRIM23	CASD1	AP1S1	GJA1	COPZ2	COG8	POMGNT1	GOLIM4	RAB6B	ST6GALNAC6	SLC30A5	GOSR2	MAN2A2	ST3GAL5	CD59	RNF121	PI4K2B	MGAT4B	TBC1D20	C1GALT1	ZDHHC5	GOLGB1	FUT1	KRAS	CD55	GPSM1	PGAP2	SREBF2	CHP1	MGAT1	GALNT7	ICA1	RAB26	NDST2	NOTCH1	B3GNT4	TPST1	PITPNB	TMEM115	TMED3	SNAP29	HLA-A	CHST14	B3GALT6	PI4K2A	LDLRAD4	ARF1	FUT4	ST3GAL4	COPB1	GBF1	ARCN1	CHSY1	HS6ST1	MBTPS2	SLC39A13	B3GAT2	PIKFYVE	ECE2	SLC2A1	AP1B1	B4GALT1	IFT20	RAB2A	ST3GAL1	HLA-B	EXT1	RAB2B	COPG2	NAA60	VPS45	TNFRSF1A	WLS	IFT27	BLZF1	APOO	SLC35D2	MGAT2	B3GALNT1	GOLPH3L	VAPA	VPS13B	ZDHHC8	GBA2	CHPT1	GORASP2	ATG9A	MBTPS1	ATG9B	ACER3	WHAMM	PI4KB	SLC35B4	GALNT1	LMAN2	C1GALT1C1	QSOX1	ZDHHC20	UNC93B1	IL17RD	NOSIP	RAB1A	RAB8A	DNM2	ZDHHC7	SLC35A4	FAM20C	RER1	SLC35B2	MAN1A1	AP1M2	RHBDF1	SLC35B3	USO1	CHST3	NOTCH4	BET1L	GALNT8	GOLGA7	PKD1	BSG	ATF6	ACBD3	AP1G1	ZDHHC21	CYTH1	ARFGEF2	GALNT11	CREB3	CHPF2	RAB1B	SCFD1	COG4	STX16	B4GALT4	MGAT4A	YKT6	HYAL2	TMED2	B4GALT2	KDELR2	COG6	CHPF	OPTN	SCARB2	SORL1	MANEA	COPB2	COPE	COPA	SCAMP5	TMED9	COG1	B3GNT2	CYTH2	PLD3	SLC33A1	AGPAT3	ATP2C1	TRIP11	PTGES2	NOS3	SLC35A2	NOTCH2	CLN3	AP1M1	KDELR3	CSGALNACT2	GNPTAB	HLA-C	OSBP	CDC42	VAMP4	COG5
+Golgi Stack (GO:0005795)		COG2	GOLGA7	VRK1	GOLPH3	NSF	RAB14	RAB27B	TMBIM4	TRAPPC4	GALNT2	USO1	SORL1	ZFYVE1	MGAT4B	GOLPH3L	GOLGA5	CLN3	RAB30	STX16	MGAT4A	RAB34	GOLGB1	OCRL
+Golgi-associated Vesicle (GO:0005798)		SPG21	TGOLN2	TMED2	FURIN	RAB13	ATP7A	CHIC2	PKD1	RHOQ	TMED9	RAB14	AP1G2	TMED10	RAB27B	ZDHHC13	COPB1	RAB12	MAP6D1	ZDHHC17	IGF2R	SPPL2A	PI4KA	SPPL3	SCFD1	GOPC	RAB8B	RAB8A	GPR89A	APP	STEAP2	BACE1	OCRL	ITM2B	GJA1	CCDC115
+Golgi-associated Vesicle Membrane (GO:0030660)		PKD1	RHOQ	KDELR2	KDELR1	ZDHHC13	TMEM199	ZDHHC17	SPPL2A	SPPL3	PI4KA	GOPC	KDELR3	GPR89A	ITM2B	GJA1
+H4/H2A Histone Acetyltransferase Complex (GO:0043189)		BRD8	MEAF6	EP400	MORF4L2	YEATS2	YEATS4	MORF4L1	VPS72	MSL3	TRRAP	RUVBL2	MRGBP	ACTL6A	RUVBL1	DMAP1	KAT5	MBTD1	ING3	EPC1
+INO80-type Complex (GO:0097346)		BRD8	INO80	EP400	YY1	ZNHIT1	SRCAP	NFRKB	INO80B	ACTR6	ACTR8	MCRS1	INO80E	CFDP1	TFPT	TRRAP	UCHL5	RUVBL2	RUVBL1	DMAP1	KAT5	ING3	ANP32E
+MLL1 Complex (GO:0071339)		TAF7	CHD8	WDR5	PELP1	RNF2	KANSL1	MEN1	LAS1L	TAF4	TAF6	RBBP5	HCFC1	KAT8	KMT2A	MCRS1	TAF9	SENP3	TAF1	HCFC2	RUVBL2	PHF20	RUVBL1	TEX10	MAX	E2F6	DPY30	PRPF31
+MLL1/2 Complex (GO:0044665)		TAF7	CHD8	WDR5	PELP1	RNF2	KANSL1	KMT2B	MEN1	LAS1L	TAF4	TAF6	RBBP5	HCFC1	KAT8	KMT2A	MCRS1	TAF9	SENP3	TAF1	HCFC2	RUVBL2	PHF20	RUVBL1	TEX10	MAX	E2F6	DPY30	PRPF31
+NuA4 Histone Acetyltransferase Complex (GO:0035267)		BRD8	MEAF6	EP400	MORF4L2	YEATS2	YEATS4	MORF4L1	VPS72	MSL3	TRRAP	RUVBL2	MRGBP	ACTL6A	RUVBL1	DMAP1	KAT5	MBTD1	ING3	EPC1
+P-body (GO:0000932)		YTHDF1	CNOT3	SQSTM1	YTHDF3	CNOT8	PSMC3	UBAP2	LSM4	ZFP36L1	PAN2	PSMA4	BTBD2	SAMD4A	TNRC6A	PNRC1	APOBEC3B	DDX6	SAMD4B	PUM1	EDC4	TNRC6C	LSM14A	EIF4E2	LSM6	EIF4ENIF1	TOP1	LIMD1	PNRC2	DCP2	TNRC6B	PSMC2	LSM1	MEX3A	RC3H1	EDC3	PSMA2	CNOT2	MOV10	CAPRIN1	DCP1A	CNOT7	ZFP36	YTHDF2	MEX3B	LSM3	DCPS	TRIM5	BTBD1	PATL1	POLR2G	EIF4E	CNOT1	LSM2	PSMA6
+PRC1 Complex (GO:0035102)		PCGF2	PHC1	PHC2	CBX4	CBX8	PCGF5	CBX7	PCGF3	PHC3	RNF2	PCGF6	CBX2	CBX6	PCGF1	RING1
+RNA Polymerase III Complex (GO:0005666)		POLR2F	POLR3B	POLR1C	POLR3F	POLR2K	POLR3E	POLR2E	POLR3K	POLR2H	POLR3C	POLR3H	POLR3A	POLR3GL	POLR2L	POLR1D
+SAGA Complex (GO:0000124)		KAT2A	TADA3	TAF5L	SF3B3	TADA2B	SUPT7L	USP22	TADA2A	SF3B5	TAF9	SUPT20H	TRRAP	TMEM98	ATXN7L3	KAT2B	ENY2	TAF12	SUPT3H	TAF10	TAF6L
+SAGA-type Complex (GO:0070461)		TAF7	KAT2A	POLE4	WDR5	TADA3	TAF5L	SF3B3	TADA2B	MAP3K7	TAF9B	ZZZ3	TAF4	YEATS2	POLE3	TAF6	SUPT7L	USP22	TADA2A	SF3B5	TAF9	DR1	SUPT20H	TRRAP	TMEM98	ATXN7L3	TAF5	MBIP	KAT2B	ENY2	TAF2	TAF12	SUPT3H	TAF10	TAF6L
+SCF Ubiquitin Ligase Complex (GO:0019005)		FBXW11	USP47	CKS1B	FBXO44	FBXW7	SKP2	CKS2	FBXO9	SKP1	FBXL12	CCNF	FBXO25	FBXO4	TMEM183A	FBXO42	CUL2	CUL1	SPSB2	SPSB3	FBXO2	FBXL5	FBXO3	RBX1	BTRC	FBXW4	FBXL6	FBXL17	FBXO27	FBXO45	FBXO32	FBXW5	CUL5	FBXL15	FBXL3	FBXO38	FBXO6	FBXO31	FBXO7	FBXL4	FBXL19
+SWI/SNF Complex (GO:0016514)		SMARCE1	SMARCC2	SMARCA2	DPF2	SMARCD1	BCL7C	ARID1A	BRD9	ARID1B	SS18	SMARCB1	ACTL6A	SMARCD3	BCL7B	SMARCD2	SMARCA4	ARID2	SMARCC1	PBRM1	PHF10
+Sin3 Complex (GO:0016580)		BRMS1L	SAP30	SIN3A	SF3B3	HDAC2	SUDS3	RBBP7	SIN3B	RBBP4	MORF4L1	OGT	BRMS1	SAP30L	CSNK2A1	ARID4B	HDAC1	PHF12	ING1
+Sin3-type Complex (GO:0070822)		BRMS1L	SAP30	SIN3A	SF3B3	HDAC2	SUDS3	RBBP7	SIN3B	RBBP4	MORF4L1	OGT	BRMS1	SAP30L	CSNK2A1	ARID4B	HDAC1	PHF12	ING1
+U1 snRNP (GO:0005685)		SNRPB	SNRPE	SNRPA	SNRNP70	LUC7L3	SNRPD3	LUC7L	SNRPB2	SNRPD2	SNRPG	PRPF39	PRPF40B	SNRPF	SNRPD1	PRPF40A
+U12-type Spliceosomal Complex (GO:0005689)		SNRPE	SNRPD3	LSM7	PDCD7	SNRPD2	SF3B4	SNRPG	SF3B3	SNRPF	PHF5A	SNRPB	SF3B1	SF3B5	ZMAT5	YBX1	ZCRB1	SNRNP48	SF3B2	SNRPD1	SNRNP25
+U2 snRNP (GO:0005686)		SNRPE	SNRPD3	SF3A1	SNRPA1	SNRPD2	SNRPG	SF3B4	SF3B3	RBMX2	SNRPF	PHF5A	SNRPB	SF3B1	SF3B5	DDX46	SF3A2	HTATSF1	SNRPB2	SF3A3	SNIP1	SF3B2	SNRPD1
+U2-type Catalytic Step 2 Spliceosome (GO:0071007)		PLRG1	SYF2	SNRNP40	SNRPE	SNRPD3	CDC40	PRPF8	SNRPA1	SNRPD2	SNRPG	RBM22	BCAS2	SNRPF	SNRPB	PRPF19	CWC15	BUD31	CDC5L	SNW1	XAB2	SNRPB2	DHX8	CWC22	EFTUD2	PPIE	CRNKL1	SRRM2	SNRPD1	PPIL1
+U2-type Precatalytic Spliceosome (GO:0071005)		SNRPE	PRPF38A	TXNL4A	SNRPD3	LSM7	SF3A1	SMU1	PRPF8	SNRPA1	SNRPD2	SF3B4	SART1	SF3B3	SNRPG	MFAP1	RBMX2	SNRPF	PHF5A	SNRPB	CWC27	SF3B1	SF3B5	SNRNP200	LSM6	PRPF4	RNF113A	LSM4	SF3A2	SNRPB2	DHX16	CWC22	EFTUD2	LSM5	SF3A3	LSM3	PRPF6	SNRPD1	WBP4	LSM2	SNIP1	SRRM2	MAGOHB	PRPF3	ZMAT2	IK	SF3B2	PRPF31
+U2-type Spliceosomal Complex (GO:0005684)		PLRG1	SYF2	TXNL4A	SNRPD3	SF3A1	PRPF8	SF3B4	PRPF39	RBM22	BCAS2	PHF5A	SNRPB	CWC27	LUC7L	BUD31	CCDC12	LSM4	HTATSF1	DHX16	DHX8	EFTUD2	LSM5	PRPF40B	SNIP1	SRRM2	SNRPD1	PRPF31	LSM7	CDC40	SMU1	SNRPG	ISY1	SART1	MFAP1	RBMX2	BUD13	SNRNP70	SF3B5	SNRNP200	LSM6	RNF113A	CWC25	GCFC2	SNW1	CWC22	EIF4A3	ZMAT2	IK	SNRPE	PRPF38A	SNRPA1	SNRPD2	RBM8A	CASC3	SF3B1	CWC15	PRPF4	LUC7L3	PPIE	SF3A3	LSM3	PRPF3	PPIL1	SNRNP40	SF3B3	SNRPF	PRPF19	TFIP11	PRPF40A	CDC5L	SF3A2	XAB2	SNRPB2	PRPF18	U2AF2	PRPF6	WBP4	CRNKL1	LSM2	MAGOHB	SF3B2
+U4/U6 X U5 tri-snRNP Complex (GO:0046540)		SNRNP40	SNRPE	TXNL4A	TXNL4B	SNRPD3	LSM7	PRPF8	SNRPD2	SNRPG	SART1	SNRPF	SNRPB	SNRNP200	LSM6	SNRNP27	PRPF4	LSM4	RBM42	SNRPA	PPIH	PRPF18	DDX23	EFTUD2	LSM5	LSM3	PRPF6	SNRPD1	LSM2	PRPF3	ZMAT2	USP39	PRPF31
+U5 snRNP (GO:0005682)		SNRNP40	SNRPE	TXNL4A	TXNL4B	SNRPD3	PRPF8	SNRPD2	SNRPG	SNRPF	SNRPB	SNRNP200	TSSC4	PRPF18	DDX23	PRPF6	CD2BP2	SNRPD1
+Actin Cytoskeleton (GO:0015629)		MYO1B	ARPC1A	ILF3	ARPC2	ACTR2	FLII	MYO6	MYADM	TWF1	LAD1	SPTBN2	FHDC1	CAPZB	TPM1	COBL	ACTN4	WASL	SPTBN1	BIN1	DNAJA3	PALLD	ATP12A	VIL1	MYO1E	TWF2	ZYX	LLGL1	NOL3	SAMD14	CTTN	SHROOM3	IQGAP1	MYO19	KLHL17	LCP1	ALDOA	CENPQ	EZR	BARX2	TOPBP1	LLGL2	SCIN	SPECC1L	PARVA	CAPZA1	WASF2	SLC9A3R1	DSTN	MYO1F	WDR1	ADAM17	KLHL20	DMTN	NPM3	PSTPIP2	MLPH	PLS1	PAWR	DBNL	LIMA1	SMTN	PDLIM7	RHOQ	PLS3	ANLN	MYLK	PPP1R9B	TRMT10A	TAX1BP3	SIPA1L1	MARK2	TAF5	DIAPH1	MYH9	PPP1R9A	ABLIM1	FLNA	GSN	PAK1	MYO5A	NEURL1B	MYO5C	CAPG	GAS2	TRIOBP	RAC1	CDC42EP4	ASAP1	KANSL2	ABLIM3	VASP	SPTAN1	MPRIP	HNRNPC	CAPZA2	DHX9	SLC2A1	ARPC3	ARHGAP32	MYO9B	MYO5B	CNN3	TSC1	TAGLN2	CORO1C	EEF1A1	INF2	ARHGAP33	SVIL	TMEM63B	PPP1R12A	APEX1	ACTN1	TPM4	ARPC5	ARSJ	FERMT3	CDH1	CLIC4	LIMD2	KNTC1	COTL1	HAX1	CFL2	NCOA5	MYO1D	KLHL2	LPXN	IPP	APBB3	PARVB	SCNN1D	FLNB	LANCL2	ACACA	FLOT1	CASK	CD2AP	TAOK2	CAPN2	CORO1B	CTTNBP2NL	SWAP70	WASF1	PDLIM5	SHROOM1	ANG	MARCKS	CFL1	ACTG1	RDX	TTC17	BAIAP2L1	CROCC	ARHGAP21	AIF1L	TPM3	DBN1	MSRB1	AKAP13	BAIAP2	CALD1	ARHGAP6	STOML2	NDC1	INTS6	MYO1C	MACF1	CNN2	LASP1	DIAPH3	STK38L	TPM2	SPTBN5	AHNAK	MTSS1	ACTR3	DYNLL1	FLOT2	IFIT5	ACTB	GAS2L1	ZNF74	ARPC1B
+Actin Filament (GO:0005884)		DMTN	MYO1B	TPM1	EZR	PSTPIP2	ACTG1	MYO9B	RHOQ	ARHGAP6	PAK1	TPM3	PLS1	PAWR	MYO5A	PLS3	TWF2	COBL	MYO6	TSC1	CTTN	GAS2L1	CORO1B	INF2	DIAPH3	MARK2	GAS2	IQGAP1	COTL1	TWF1	DNAJA3	ACTN1	TPM4	DIAPH1	PALLD	RAC1	TPM2	FHDC1	AIF1L	LCP1
+Actin-Based Cell Projection (GO:0098858)		MYO1B	SLC9A3R1	STARD10	PODXL	MYO10	NF2	ESPN	MYO1F	CXADR	TWF1	CD44	PROM2	RDX	TUBB3	SPATA13	FGF13	HYAL2	VIL1	PDGFA	CLIC4	MYO1E	MYO1C	TWF2	PPP1R9B	ITGB1	LCP1	MYO1D	DAG1	EZR	TGFB1	UTRN	SLC27A4	CDC42
+Adherens Junction (GO:0005912)		FLOT1	CHAF1B	BMPR2	ILF3	CDC42EP4	PARD3	NF2	LIN7B	PKP2	CXADR	CDCA3	DLG5	ANXA2	PDLIM1	PDLIM5	CDH15	MAGI1	SHROOM1	APC	PAK4	CTNND2	AHI1	RDX	TLN1	KRT18	CCDC85C	VCL	CNN3	LIMD1	ADD1	CTNNB1	BAIAP2L1	LIN7A	CDH26	TMOD3	PKP3	FRMD4B	CDC42EP1	PDLIM7	PPP1CA	BAIAP2	CDH1	MYO1E	STXBP6	ZYX	LLGL1	DLL1	NDRG1	SNAP23	SHROOM3	EIF4G2	DSP	EZR	SDCBP	VEGFA	LLGL2	CCDC85B	FLOT2	CAMSAP3	NOTCH1	FERMT2	TNKS1BP1	TJP1	DLG3	ARVCF	PKP4	RAB10	KLHL24	CTNNA1	PVR	DLG1	CTNND1	SCRIB	S100A11	JUP	SMAD7	PARK7	FRS2	LIN7C
+Aggresome (GO:0016235)		XRN2	SQSTM1	TDP2	TRIM66	PSEN1	EPS15	RNF32	UBQLN1	TRIM37	HSPA1B	CABIN1	EDEM1	HDAC6	RANGAP1	STRADB	DVL2	POLD1	ZBTB14	HSPA1A	EEF2	HOXC9
+Anaphase-Promoting Complex (GO:0005680)		FZR1	CDC20	ANAPC16	ANAPC15	ANAPC5	ANAPC2	ANAPC10	ANAPC13	UBE2S	CUL7	CDC23	ANAPC11	BUB1B	CDC16	CDC27	UBE2C	ANAPC4	ANAPC7
+Apical Junction Complex (GO:0043296)		CHAF1B	RAB13	EPPK1	PARD3	FBF1	PARD6A	CXADR	ANK3	MARVELD3	SHROOM1	PARD6B	APC	AMOTL1	F11R	PKN2	ACTG1	RHOA	CCDC85C	USP53	EPCAM	RAP2C	CYTH1	UBN1	MICALL2	ECT2	FRMD4B	YBX3	CDH1	CGN	CLDN3	WNK4	TJP3	TBCD	CLDN7	VAPA	SHROOM3	SAPCD2	CLDN12	RAP2B	CRB3	OCLN	CAMSAP3	TJP2	TJP1	MTDH	MARVELD2	TGFBR1	OCEL1	DLG1	CLDN4	JUP
+Asymmetric Synapse (GO:0032279)		CRIPT	RPS19	GPER1	HOMER1	CNIH4	CDK5	GPHN	MAPK8IP2	RPL8	DLG5	PDLIM5	DTNB	LZTS3	USP50	RPS13	CTNND2	INPP4A	ARHGAP32	FOXM1	HIP1R	RPLP0	SEMA4C	ARFGEF2	RPL12	ADD1	NSMF	MTMR2	RPL38	DNAJC6	RPS3	CHRNA3	GRIN1	RPL14	PICK1	RPS25	PPP1R9B	PTK2B	RPL30	SAMD14	SHANK2	SIPA1L1	FABP5	RTN4	NETO2	RPS14	HOMER2	ADD3	PPP1R9A	FXR2	DTNBP1	NSF	RTN3	FXR1	USP8	RPS27	CPEB4	FMR1	RGS14	SIGMAR1	RPS18	PRNP	ARHGEF9	SCRIB	RPL7	TSC2	HOMER3
+Autophagosome (GO:0005776)		SQSTM1	MAP1LC3B	VTI1A	GABARAP	HTT	CHMP7	VPS33A	TP53INP1	ATG14	STX17	CHMP4C	CALCOCO2	CHMP6	AUP1	CHMP5	ATG16L1	GABARAPL2	TECPR1	TBC1D25	HSPA8	PIK3C3	RAB24	MAPK15	WIPI2	TBC1D12	GABARAPL1	TBC1D14	FYCO1	ULK2	LAMP2	UBQLN4	PEG3	PRKD1	ATP13A2	UBQLN1	ULK1	CHMP1B	FTH1	CHMP3	PIP4K2B	WDFY3	MAP1LC3A	CHMP2A	ATG16L2	BECN1	ATG9A	SH3GLB1	ENTPD4	ATG9B	NBR1	PIP4K2C	VMP1	TBC1D5	ATG5	UVRAG	ZFYVE1	TEX264	CLN3	SNAP29	CHMP1A	JMY	WDR81	NCOA4	ULK3	FTL	CHMP2B
+Autophagosome Membrane (GO:0000421)		GABARAPL2	SH3GLB1	ENTPD4	PRKD1	MAP1LC3B	VMP1	TECPR1	GABARAP	CHMP7	ULK1	UVRAG	CHMP1B	CHMP3	GABARAPL1	STX17	CHMP4C	TEX264	CHMP1A	JMY	CHMP6	WDFY3	WDR81	MAP1LC3A	CHMP2A	ATG16L2	CHMP5	ATG9A	CHMP2B
+Axon (GO:0030424)		GPER1	CD2AP	TAOK2	HTT	CDK5	GSK3B	MAP9	KIF1B	DCTN1	TNFRSF25	SYAP1	NF1	IGSF9	MAPK8IP3	COMT	PINK1	ATP7A	EMB	LDLRAP1	SPG11	DYRK1A	NFIB	MUL1	TUBB3	COBL	SSNA1	MTMR2	MAP4	DIP2B	HDAC6	APP	BIN1	PTK7	FGF13	PALLD	GSK3A	KIF1A	MME	ZFYVE27	ALCAM	RAB5A	LLGL1	ZC3H14	KIF1C	SETX	SEMA6A	IQGAP1	MAPK8	FEZ1	INSR	SYT7	MAP7	PPT1	NCDN	PRKAA2	MYO1D	SACS	DHX36	FXR2	DTNBP1	IGHMBP2	PAK1	RNF6	FXR1	FMR1	PTPRS	FEZ2	BAG2	SPAST	DOCK7	PRKAA1	CCSAP	STAT1	PARK7	UHMK1	CIB1
+Azurophil Granule (GO:0042582)		MGST1	PRSS8	CD63	TMEM30A	ANXA11	BRI3	ACTR2	GNS	ATP11B	DDOST	RNASET2	NPC2	ACTR10	PRCP	ANXA2	PRKCD	CTSC	DYNC1H1	FUCA2	TOM1	DPP7	GDI2	TMEM179B	RAP1B	STXBP2	IMPDH1	B4GALT1	ATP8A1	GUSB	CTSA	PSEN1	IST1	DSN1	ARL8A	CD68	TOLLIP	GRN	HEXB	STX3	PA2G4	LAMTOR1	CPNE3	GGH	MAN2B1	LAMP2	DNAJC3	SURF4	LAMP1	GLA	VCP	GM2A	AGA	HEXA	MAGT1	NDUFC2	TADA2A	VAMP8	DNAJC13	HEBP2	NHLRC3	NCSTN	CREG1	SNAP23	VAPA	GAA	STX7	GLB1	FABP5	PYCARD	MAPK1	PIGR	FRK	PYGB	RAB3D	SDCBP	CMTM6	PSAP	CPNE1	PRDX6	SYNGR1	TUBB4B	DNAJC5	ACLY	GLIPR1	PSMD1	TRAPPC1	RAB5C	FUCA1	PTGES2	LPCAT1	CYB5R3	CCT2	SNAP29	FAF2	TXNDC5	CKAP4	CCT8	FTL
+Azurophil Granule Lumen (GO:0035578)		PRSS8	ACTR2	GNS	RNASET2	NPC2	ACTR10	ANXA2	PRKCD	CTSC	DYNC1H1	FUCA2	DPP7	GDI2	IMPDH1	GUSB	CTSA	IST1	DSN1	TOLLIP	GRN	HEXB	PA2G4	GGH	MAN2B1	DNAJC3	GLA	VCP	GM2A	AGA	TADA2A	HEBP2	NHLRC3	CREG1	GLB1	FABP5	PYCARD	MAPK1	FRK	PYGB	SDCBP	PRDX6	TUBB4B	PSMD1	TRAPPC1	FUCA1	PTGES2	CYB5R3	CCT2	FAF2	TXNDC5	CCT8	FTL
+Azurophil Granule Membrane (GO:0035577)		SURF4	MGST1	LAMP1	RAB3D	CD63	TMEM30A	B4GALT1	CMTM6	ATP8A1	PSAP	CPNE1	MAGT1	NDUFC2	PSEN1	BRI3	SYNGR1	VAMP8	DNAJC5	ARL8A	CD68	ATP11B	DNAJC13	DDOST	GLIPR1	NCSTN	RAB5C	LPCAT1	PIGR	LAMTOR1	VAPA	CPNE3	GAA	SNAP29	PRCP	TOM1	CKAP4	LAMP2	TMEM179B	RAP1B
+Basolateral Plasma Membrane (GO:0016323)		SLC13A3	FLOT1	CASK	LDLR	ABCC1	ABCC5	SLC29A2	SLC31A1	AQP3	SLC39A8	LIN7B	SLC3A2	ATP1A1	EGFR	CXADR	IDE	NEDD9	SLC26A6	ANXA2	DSTYK	SLC22A3	SLC38A1	SLC19A1	ANK3	BEST1	SLC2A1	SLC4A7	CNNM2	CD44	ATP7A	TFRC	PKD1	B4GALT1	PDZD11	SLC6A6	AURKA	EPCAM	SLC29A1	SLC4A2	SLC41A1	EPB41	CTNNB1	LIN7A	ERBB2	SLC5A6	SLC30A1	NUMB	SLC46A1	ATP1B3	ABCC4	CADM1	STX4	SLC7A1	SLC7A5	SLC23A2	SLC16A1	MYO1D	SLC39A14	EZR	FLOT2	ERBB3	SLC16A3	TJP1	ATP2B1	MARVELD2	SLC40A1	CD81	RAB17	DLG1	SLC7A8	SLC4A4	LIN7C
+Bicellular Tight Junction (GO:0005923)		CHAF1B	RAB13	EPPK1	PARD3	PARD6A	CXADR	ANK3	MARVELD3	PARD6B	APC	AMOTL1	F11R	USP53	EPCAM	UBN1	CYTH1	RAP2C	MICALL2	ECT2	FRMD4B	YBX3	CGN	CLDN3	WNK4	TJP3	TBCD	CLDN7	VAPA	CLDN12	RAP2B	OCLN	TJP2	TJP1	MTDH	MARVELD2	TGFBR1	OCEL1	DLG1	CLDN4
+Bounding Membrane Of Organelle (GO:0098588)		VAC14	MYO1B	ARRB1	CD63	RHOB	PAQR3	VPS11	VTI1A	B4GALT5	UBIAD1	VPS33A	GLG1	LMAN1	PMEL	SLC35A1	ANKFY1	LYN	TAP2	SLC35C1	ANTXR1	CHMP6	STEAP2	TOM1	GPR157	COL7A1	BBIP1	COG3	GABARAPL2	SLC30A7	B3GNT5	CAMK2D	HLA-E	VPS25	ZDHHC3	GORASP1	RNF144A	GOLGA3	IRF7	GOLGA2	GALNT2	GLIPR2	APLP2	WASL	ITPR1	ZDHHC9	ATP6V0D1	PAM	RHOD	BET1	ATAD3B	ARFGAP3	COPZ1	PCSK7	ARHGAP1	B2M	TMED10	CHERP	BBS4	SURF4	RPS27A	ARF3	GOSR1	TMED7	PDGFA	MME	MAP3K7	RAB7A	EXT2	ZDHHC13	ATP6AP1	RAB5A	ATP6V0A1	FKTN	SGMS2	TMEM231	MAN1A2	TAPBP	HRAS	ZDHHC17	IQGAP1	TPCN1	GOPC	FABP5	PYCARD	MYD88	SLC35A3	PMEPA1	APH1A	SREBF1	UBB	COG2	UGCG	ABHD17B	ENTPD4	FURIN	SGMS1	STX5	ALDH3B1	AP1G2	B4GALT3	HS2ST1	KIF13A	GGA2	RAB5B	TSG101	LMAN2L	PLEKHF1	VAMP2	COPG1	CAMK2B	B4GALT7	F8	RAB33B	CAMK2G	SACM1L	SORT1	XYLT2	TCTN3	KDELR1	STIM1	B3GAT3	ARFGEF1	ARFIP1	NDST1	VPS4B	GOLGA5	NRAS	HBEGF	AP1S2	CTSC	PLEKHA3	GPR108	ADAM17	STX6	TMEM179B	EBAG9	ATP2C2	MAPK8IP3	GNAI3	DMTN	RGP1	ABHD17C	TFRC	MCFD2	RHOA	RAB6A	MVB12A	VPS37B	ABCB6	AP2S1	CALR	RFFL	AP2B1	COG7	ST3GAL3	TAB1	RAB30	TRIM23	GPR89A	CASD1	ABHD17A	AP1S1	ITPR3	TMEM175	GJA1	SLC30A4	LAMP1	COPZ2	COG8	POMGNT1	GOLIM4	RHOQ	RAB6B	ST6GALNAC6	SLC30A5	GOSR2	PICK1	VAMP8	MAN2A2	ULK1	ST3GAL5	CD59	RNF121	NCSTN	SHANK2	RHOG	PI4K2B	MGAT4B	TBC1D20	SPPL3	TAP1	C1GALT1	WDR59	ZDHHC5	GOLGB1	INSR	DIAPH1	ITGB1	TMEM165	FUT1	KRAS	CD55	GPSM1	PGAP2	SREBF2	CHP1	MCOLN1	ATP6AP2	GALNT7	ICA1	MGAT1	SLC36A4	ATP2A2	RAB26	NDST2	NOTCH1	B3GNT4	TPST1	PITPNB	TMEM115	RAB10	RAB35	TMED3	PI4KA	SNAP29	TRAPPC3	HLA-A	CHST14	TAB2	RYR1	RAC1	RIPK1	AP3D1	B3GALT6	PI4K2A	CNIH4	ATP2A1	LDLRAD4	CLCN3	ARF1	SLC48A1	VPS39	FUT4	ACAP2	ST3GAL4	SMO	SLA2	COPB1	UBAP1	GBF1	VPS41	UBA1	ARCN1	ATP2A3	CHSY1	EGFR	PSENEN	STX17	HS6ST1	MBTPS2	SLC39A13	APH1B	B3GAT2	ECE1	MDM2	PIKFYVE	ECE2	SERPINB6	SLC2A1	BBS7	ANTXR2	BOK	AP1B1	CD44	EXOC3	B4GALT1	IFT20	RHOU	RAB2A	ST3GAL1	HLA-B	CORO1C	EXT1	RAB2B	COPG2	RAB18	WDR24	NAA60	TAB3	VPS45	SVIP	ERBB2	TNFRSF1A	ADCY3	WLS	IFT27	WDR83	BLZF1	APOO	SLC35D2	SNX1	MGAT2	CHMP1B	ATP6V0E1	STAB1	B3GALNT1	VPS35	GOLPH3L	VAPA	CTSZ	VPS13B	ZDHHC8	PTCH1	SNX2	TMEM184A	CHPT1	ARL13B	GORASP2	ATG9A	MBTPS1	ATG9B	PLEKHM2	ACER3	SNX17	APPL1	WHAMM	PI4KB	SLC35B4	DYNC1LI1	GALNT1	LMAN2	C1GALT1C1	TBC1D5	QSOX1	ZDHHC20	NPRL2	AP2A2	LAMTOR2	UNC93B1	IL17RD	COLEC12	NOSIP	AP2A1	VPS16	RAB1A	TMBIM1	RAB8A	BACE1	CD9	SNX3	DNM2	TMEM38A	TMEM38B	CASK	ZDHHC7	SLC35A4	LDLR	FAM20C	RER1	SLC35B2	CTSD	MAN1A1	AP1M2	SNF8	RHBDF1	SLC35B3	VPS37C	USO1	CHST3	TCIRG1	NOTCH4	GGA3	SCARB1	IRAK2	SLC18B1	VPS26A	BET1L	GGA1	GALNT8	AP2M1	ORMDL3	GOLGA7	PKD1	BSG	ATF6	ACBD3	ATP6V0B	VPS28	AP1G1	ZDHHC21	RAB24	VPS33B	CYTH1	ARFGEF2	GALNT11	CREB3	IRAK1	CHPF2	TTC8	SPPL2A	RAB1B	SCFD1	COG4	STX16	B4GALT4	MGAT4A	RAP1A	VPS37A	VPS37D	YKT6	EHD1	CSNK1D	HYAL2	TMED2	B4GALT2	KDELR2	UBA52	COG6	CHPF	OPTN	DNAJC13	SCARB2	TMEM199	VPS18	VPS13A	BBS2	SORL1	EMC6	IGF2R	MANEA	COPB2	LAMTOR3	COPE	ITM2B	COPA	SCAMP5	FKBP1B	ATP6V0A2	TMED9	COG1	VPS4A	B3GNT2	VAMP4	CYTH2	PLD3	SLC33A1	AGPAT3	UVRAG	ATP6V0E2	CNIH1	ATP2C1	TRIP11	RHOF	PTGES2	CLCN6	NOS3	SLC35A2	NOTCH2	CLN3	AP1M1	IRAK4	KDELR3	CSGALNACT2	GNPTAB	HLA-C	OSBP	CDC42	RYR2	COG5
+Calcium Channel Complex (GO:0034704)		SMDT1	FKBP1B	PKD1	PRKACA	ATP2A1	CACNB3	CACNA1D	CALM2	MCU	PDE4B	MICU1	CALM1	ORAI1	CALM3	RYR1	MICU2	RYR2
+Cation Channel Complex (GO:0034703)		FKBP1B	TRPM4	PKD1	PRKACA	ATP2A1	TRPM2	SCNN1B	CALM2	MCU	AKAP9	SCNN1D	SCNN1G	CALM1	MICU1	ORAI1	TRPC1	CALM3	RYR1	MICU2	RYR2
+Caveola (GO:0005901)		FLOT1	BMPR2	CBL	KIF18A	MAPK3	CDH1	LRP6	DYNLL1	FLOT2	IRS1	SMO	SMPD2	CORO1C	NOS3	CD320	CLN3	LRP8	HDAC6	BMPR1A	PTCH1	SCARB1	PACSIN2	EMP2	INSR	RANGRF	MAPK1	SRC
+Cell Projection Membrane (GO:0031253)		SLC9A3R1	CASK	PODXL	TCTN3	PEX19	ARF6	SMO	SLC3A1	SLC26A6	SYTL1	ANTXR1	GPR157	BBS7	BBIP1	DMTN	PKD1	B4GALT1	SLC12A2	SLC6A6	SLC22A5	SYNE2	GNA13	LIMA1	TTC8	MFSD10	SLC11A2	BBS4	ADCY3	SHANK2	TMEM231	BBS2	PLEKHO1	PTCH1	SLC7A5	ARL13B	GNA12	SLC17A4	UTRN	RAB35	ITGAV	ITGA3	SLC7A8
+Cell-Cell Contact Zone (GO:0044291)		FLOT1	AHNAK	DSP	FLCN	RAP2B	PAK1	BAIAP2L2	FLOT2	TJP2	FGFRL1	VCL	RAP2C	PKP4	PKP2	CXADR	PIK3CA	DSG2	OBSL1	DLG1	DSC2	TMEM65	JUP	YWHAH	RANGRF	ANK3	FGF13	ATP1B1	GJA1
+Cell-Cell Junction (GO:0005911)		FLOT1	HPN	CASK	CHAF1B	BMPR2	FLCN	STARD10	ILF3	PNN	CDC42EP4	PARD3	FBF1	KAZN	AQP3	NF2	PRKCI	LIN7B	PARD6A	CDC42BPA	MYADM	SIRT2	UBA1	PKP2	CXADR	DSG2	CDCA3	TNFRSF25	DLG5	ANXA2	PDLIM1	TWF1	PDLIM5	CDH15	WDR1	MAGI1	ADAM17	SHROOM1	PARD6B	APC	RAP1B	PAK4	CTNND2	F11R	PKN2	ACTG1	AHI1	B4GALT1	PDZD11	RDX	RHOA	FOXM1	TLN1	KRT18	CCDC85C	USP53	VCL	CNN3	MAPK15	RAP2C	LIMD1	MICALL2	PTPRK	STX3	ADD1	PRKCZ	CTNNB1	VSIG10	BAIAP2L1	LIN7A	PERP	CDH26	ACTN1	PTK7	PTPRU	PXN	NPHP4	TMOD3	ECT2	PKP3	FRMD4B	CDC42EP1	GJA1	PDLIM7	PPP1CA	BAIAP2	CDH1	CLIC4	CLDN3	DNMBP	MYO1E	STXBP6	ZYX	CADM1	LLGL1	TMEM47	CNN2	LIMS1	DLL1	NDRG1	SNAP23	PAK2	SHROOM3	LSR	PARD6G	SAPCD2	CDC42BPB	RAP2B	STEAP1	GRHL2	MAP2K2	EIF4G2	MPP1	AHNAK	DSP	EZR	FLNA	SDCBP	CRB3	VEGFA	PAK1	BAIAP2L2	LLGL2	CCDC85B	FLOT2	OCLN	NOTCH1	TJP2	FERMT2	FAT1	TNKS1BP1	FGFRL1	TJP1	MTDH	MARVELD2	DLG3	ARVCF	PKP4	KLHL24	PTPRJ	CTNNA1	RAB10	RPGRIP1L	PVR	DLG1	DSC2	CTNND1	CLDN4	S100A11	SCRIB	JUP	SDCCAG8	KRIT1	PARK7	SMAD7	FRS2	LIN7C
+Cell-Substrate Junction (GO:0030055)		RPS19	PRSS8	RHOB	RSU1	ARPC2	YWHAQ	ACTR2	ADAM10	YWHAZ	HYOU1	ANXA6	DCAF6	SNTB1	RPL4	TWF1	ARPC5L	ILK	RPS3A	RPS13	GRB7	PPIA	CSRP1	ACTN4	LIMD1	ALKBH6	CTNNB1	PABPC1	RPS3	FES	YWHAE	PXN	PALLD	B2M	HMGA1	ADAM9	MME	RPL6	ITGB7	ZYX	CD151	RPL30	RPL37A	LIMS1	CTTN	RPS8	IQGAP1	EFNB2	RPS14	LCP1	GNA12	EZR	RPL18	RPL9	PARVA	CTNNA1	MAPRE1	RPL19	ARHGEF2	MAP2K1	KIF23	FZD1	CYFIP1	RPL31	PTK2	SENP1	RPL7A	NEDD9	CAPN5	RPS16	CD46	RPL13A	USP33	ADAM17	SRC	HNRNPK	RPLP2	LPP	RHOA	PPFIBP1	PPP1CC	PRKAR2A	YWHAB	VCL	SYNE2	SLC4A2	CALR	GNA13	LIMA1	RPL38	ITGB5	RPL27	RALA	GJA1	PDLIM7	GIT1	NUMB	FOCAD	CAPN1	JAK1	ALCAM	ITGB1BP1	PTK2B	CD59	NCSTN	RHOG	SNAP23	ANXA5	HSPB1	ITGB1	KRAS	CD99L2	CHP1	MYH9	FLNA	NPM1	GSN	SNTB2	HSPA9	LMO7	RAB10	CD81	HSPG2	PI4KA	ITGA3	RPS18	DOCK7	PACSIN2	TRIOBP	RPL7	RAC1	SRP68	GNB2	RPL3	ARF1	VASP	MPRIP	HSPA1B	EGFR	RPS2	KLF11	PDLIM1	RPS7	GDI2	PIP5K1A	TSPAN4	ARPC3	PAK4	RPS29	CD44	EVL	PFN1	HSPA8	MDC1	P4HB	CNN3	RAB21	RPL12	CORO1C	ADD1	HSPA5	RPLP1	SVIL	MCAM	TNS3	PPP1R12A	TES	ACTN1	TPM4	CDC42EP1	AKAP12	MMP14	ARPC5	FERMT3	RRAS2	ASAP3	RPL22	RPS5	YES1	ARHGEF7	PDCD6IP	MAPK1	MAP2K2	ARL14EP	MPZL1	LPXN	FGFR3	ENAH	PARVB	PLEC	PROCR	DAB2	G3BP1	FLNB	JUP	CD9	REXO2	DNM2	FLOT1	CASK	RPL10A	CAT	PCBP2	EPPK1	RPL5	TGM2	CAPN2	ARF6	RPL8	CORO1B	PDIA3	HSPA1A	MARCKS	CFL1	BCAR3	ACTG1	BSG	RDX	TLN1	MAP4K4	PTPRA	RPLP0	PPFIA1	SLC9A3R2	YWHAG	BCAR1	CPNE3	GIT2	STX16	PTK7	AIF1L	ARL2	MAPK3	PPP1CB	RPS11	SCARB2	CNN2	LASP1	ITGA6	SORBS3	NCKAP1	IGF2R	TLE2	TSPAN9	LAMTOR3	ARMC5	DST	DAG1	AHNAK	RPS4X	ACTR3	ATP6V0A2	CLTC	PPIB	DYNLL1	FLOT2	FERMT2	FAT1	ACTB	CLASP2	HSP90B1	PVR	ITGAV	TMEM98	RPS15	ARPC1B	RPS9	CSRP2	CDC42	TRIP6
+Chromosome (GO:0005694)		SMARCA5	MLH1	HP1BP3	SMC6	SPIDR	STAG1	PDS5A	CDCA5	BAZ1A	SMC2	CENPH	RPF2	RSL1D1	GNL3	HNRNPU	SIRT2	RRP1B	RAD21	SURF6	EXOSC9	TOP2A	NCAPD2	RCC1	TERF2IP	DDX27	JUN	DNTTIP1	ELL3	FANCE	FANCD2	BRCA1	LIG4	ZNF276	RECQL4	CHD1	ZFX	CCDC137	PDS5B	BIRC5	UVSSA	ATR	NCAPG	BANF1	CNTD1	MDC1	PIN4	GET4	LLPH	TOP1	BRIX1	CENPE	NOC2L	SETMAR	ZNF202	DDX21	HMGB2	DNTTIP2	HOXA13	UTP6	PES1	ESCO1	IK	NCL	GTF2B	TRIP13	SMARCE1	DMC1	DDX18	REPIN1	EMG1	STAG2	CCDC86	SETD2	RECQL	EBNA1BP2	CTCF	INTS7	POLR1A	SETX	FIGNL1	HDAC8	CENPB	EXOSC8	BYSL	NOL7	HSF2BP	CLOCK	POLR1B	RAD51AP1	BLM	MKI67	BMS1	CDYL	NOL8	SETD7	TOPBP1	RECQL5	RBM34	RBL2	FTSJ3	FMR1	HMGB1	TRAPPC13	MAD2L2	RRP1	KRR1	MPHOSPH10	RAD51	RHNO1	SMC3	PPP1R7	CHAMP1	KAT7	SMC5	SMC1A	PBRM1	PRR19
+Cilium (GO:0005929)		FUZ	CASK	FLCN	HSPB11	TXNDC15	PDZD7	TCTN3	IFT172	SMO	CEP104	IFT81	IFT88	FAM161A	FAM161B	IFT57	CCDC66	IFT43	MLF1	KISS1R	GPR157	FHDC1	DYNC2LI1	BBS7	BBIP1	TMEM216	RRP7A	DLEC1	IFT140	PKD1	AHI1	DYNLRB1	PROM2	RAB14	SORD	TMEM138	TNPO1	IFT20	TUB	IQCB1	ANKS3	TTC8	CSNK1A1	NPHP4	BBS4	ADCY3	RSPH3	NPHP3	DYNLL2	ARL2	GAS8	PMPCA	CBL	IFT27	MKKS	IFT46	IFT122	NEK8	DNAH2	ARL3	RP2	HYLS1	SHANK2	TMEM231	BBS2	RSPH9	DAAM1	KIF3B	PTCH1	OFD1	USP9X	IFT80	ARL13B	CEP89	ATP6V1D	TBC1D30	KIF7	KIF3C	DYNLL1	DNAH11	CAMSAP3	IFT52	EPS8L1	KIFAP3	IFT74	UNC119B	RAB10	RPGRIP1L	PAFAH1B1	CCSAP	RAB8A	MOK	MBD1	RILPL1	TTLL7	KIF3A	SPA17	DNAH5
+cis-Golgi Network (GO:0005801)		LRPAP1	TMED5	BOK	COPZ2	GOSR1	MPPE1	SLC10A7	ANGEL1	GOLIM4	HOOK3	TRAPPC6B	BLZF1	KDELR2	KDELR1	GORASP1	IFT20	PMEL	B3GAT3	GOLGA2	GOLGA8A	FKTN	GBF1	ATP2C1	MAP6D1	TRAPPC6A	GOLGA5	RAB30	TRAPPC3	SCFD1	KDELR3	GOLGB1	GPR108	GORASP2	TMED10	SLC35C2
+Clathrin-Coated Endocytic Vesicle (GO:0045334)		LDLR	MYO6	CLTB	EGFR	HBEGF	PICALM	OCRL	AP2M1	EGF	TFRC	LDLRAP1	AP2S1	AP2B1	FZD4	DVL2	SLC2A8	CLTA	MYO1E	VAMP8	RAB5A	M6PR	SCARB2	IGF2R	LMBRD1	TGOLN2	SFTPA2	CLTC	VAMP3	RAB35	AP2A2	AP2A1	VAMP2	CD9	VAMP4
+Clathrin-Coated Endocytic Vesicle Membrane (GO:0030669)		TGOLN2	EGF	LDLR	TFRC	CLTC	LDLRAP1	VAMP8	RAB5A	M6PR	VAMP3	SCARB2	RAB35	AP2A2	AP2S1	EGFR	AP2B1	AP2A1	FZD4	IGF2R	VAMP2	HBEGF	CD9	SLC2A8	VAMP4	AP2M1
+Clathrin-Coated Vesicle (GO:0030136)		EPN3	RAB13	SORT1	VTI1A	SCAMP1	AP1M2	CLVS1	MYO6	VPS41	CLTB	PIK3C2A	RAB8B	PICALM	STEAP2	OCRL	ECE1	STX6	FCHO2	AP2M1	SPG21	ATP7A	RAB14	HIP1R	AP1G1	VPS33B	TNK2	HIP1	AP2S1	AP2B1	SNX9	DVL2	TMED10	NUMB	CLTA	MYO1E	RAB27B	RAB12	IGF2R	HAX1	GOPC	LMBRD1	TGOLN2	FURIN	SFTPA2	CLTC	TMED9	SNX18	GGA2	VAMP3	RAB35	AP2A2	AP2A1	AP1M1	VAMP2	DAB2	GPR107	RAB8A	SNX3
+Clathrin-Coated Vesicle Membrane (GO:0030665)		EPN3	LDLR	CLTB	EGFR	EPN2	HBEGF	AP2M1	EGF	TFRC	LDLRAP1	HSPA8	NECAP2	EPN1	AP1G1	AP2S1	AP2B1	FZD4	SLC2A8	NECAP1	CLTA	VAMP8	RAB5A	M6PR	SCARB2	IGF2R	CLINT1	TGOLN2	CLTC	DNAJC5	VAMP3	RAB35	AP2A2	AP2A1	VAMP2	CD9	VAMP4
+Coated Vesicle (GO:0030135)		EPN3	TEX261	SORT1	DDHD2	VTI1A	SCAMP1	CNIH4	SEC23IP	AP1M2	CLVS1	ERGIC2	KLHL12	LMAN1	VPS41	STX17	PIK3C2A	PICALM	CTSC	OCRL	STX6	COL7A1	FCHO2	CCDC115	HIP1R	AP1G1	GOLGA2	VPS33B	TMED6	TNK2	YIF1B	HIP1	SNX9	TMED10	TMED2	NUMB	TMED7	TMED1	SEC31A	TMED4	CTSZ	HAX1	F8	LMBRD1	YIF1A	TMED5	CLTC	TMED9	LMAN2	HSPD1	SNX18	GGA2	VAMP3	ERGIC3	TMED3	LMAN2L	AP1M1	VAMP2	DAB2	GPR107	IER3IP1	SNX3	ERGIC1
+Coated Vesicle Membrane (GO:0030662)		TMED2	VTI1B	SEC24B	SEC24D	HLA-E	MCFD2	CNIH4	STX5	VTI1A	KDELR2	KDELR1	SEC23A	SLC30A5	SEC31A	GOSR2	LMAN1	SAR1B	CD59	TMEM199	SEC13	CNIH1	USO1	HLA-B	SEC24A	HLA-A	KDELR3	SEC24C	HLA-C	SEC16A	B2M	TMED10
+Collagen-Containing Extracellular Matrix (GO:0062023)		CTSB	LMAN1	ANXA6	PCSK6	HDGF	IGFBP7	ANXA7	COL7A1	VWA1	GDF15	FGL1	S100A10	COL6A1	CD151	COL18A1	MST1	CTSH	TIMP2	HNRNPM	THBS3	CLU	ADAMTS1	COCH	S100A6	CTSC	PKM	SERPINB1	CSTB	BCAT2	F12	SMOC2	ANXA5	PSAP	CRELD1	HSPG2	SDC2	FBLN1	PRG4	SERPINB6	LTBP1	MDK	PLSCR1	SHH	LOXL3	LGALS1	MATN2	EFEMP2	LAMA5	CTSZ	S100A4	COL6A2	LAMB1	CASK	TGM2	CTSD	ANXA11	FMOD	AGRN	ANXA4	ANXA2	ANG	ZP3	MXRA7	FN1	ADAMTS3	KAZALD1	LAMB2	CTSF	LAMC1	CHADL	ANGPTL4	SERPINH1	CTSL	LTBP4	DST	DAG1	THBS1	TGFB1	HSP90B1	COL9A3	CCNA2
+Condensed Chromosome (GO:0000793)		BRD4	SMARCA5	MKI67	SMC6	CENPC	DMC1	NCAPG	NSMCE4A	SMC2	BANF1	NCAPG2	PSMC3IP	NOL6	KIFAP3	RAD50	LRPPRC	TUBG1	NCAPH2	SUV39H1	CHEK1	HMGB1	CTCF	CENPE	SETMAR	RAD51	NCAPD2	RGS12	HMGB2	RCC1	NSMCE1	CHAMP1	CHMP1A	NCAPD3	CENPA	NCAPH	NSMCE2	FANCD2	CBX3	SMC5	SMC1A	SMC4	LIG4
+Condensed Nuclear Chromosome (GO:0000794)		DMC1	NCAPG	SMC2	NCAPG2	PSMC3IP	NOL6	KIFAP3	RAD50	LRPPRC	TUBG1	NCAPH2	SUV39H1	CHEK1	RAD51	NCAPD2	RGS12	RCC1	CHMP1A	NCAPD3	NCAPH	SMC1A	SMC4
+Core Mediator Complex (GO:0070847)		MED15	MED6	MED7	MED30	MED23	MED16	MED21	MED27	MED10	MED19	MED11	MED4	MED22	MED17	MED9	MED20	MED18	MED14	MED31	MED8	MED26	MED29	MED28
+Cortical Actin Cytoskeleton (GO:0030864)		FLOT1	AKAP13	CDH1	RDX	GSN	DYNLL1	MLPH	LLGL2	FLOT2	CAPN2	COBL	LLGL1	ACTN4	SPTAN1	MYADM	LASP1	EEF1A1	SHROOM3	SPTBN1	COTL1	SPTBN5	SPTBN2	WDR1	SHROOM1	LANCL2	SLC2A1
+Cortical Cytoskeleton (GO:0030863)		FLOT1	AKAP13	EZR	CDH1	RDX	GSN	DYNLL1	MLPH	LLGL2	FLOT2	CAPN2	LLGL1	ACTN4	SPTAN1	MYADM	LASP1	CTTN	EEF1A1	NSMF	EPB41	MAPRE1	COTL1	SHROOM3	SPTBN1	SPTBN5	SPTBN2	WDR1	SHROOM1	LANCL2	SLC2A1	DBN1
+cullin-RING Ubiquitin Ligase Complex (GO:0031461)		CUL4A	KLHL9	CDC20	SKP2	CKS2	FBXO9	CCNF	ANAPC1	ENC1	CUL2	DCAF4	KLHL12	CUL1	ZER1	KLHL22	ANAPC15	SPSB3	ANAPC5	PRAME	FBXW4	DCAF6	PEF1	ANAPC11	CAND1	FEM1C	KCTD2	CDC27	FBXO38	UBE2C	KLHDC1	FBXL4	ANAPC7	KLHL20	CKS1B	FZR1	FBXW7	KLHDC10	KLHDC3	COMMD1	TMEM183A	FBXO25	FBXO42	SPOPL	ANAPC2	ANAPC10	FBXL5	FBXO2	FEM1A	BTRC	FBXL6	KLHDC2	DCAF15	CDC16	KEAP1	AMN1	FBXL15	FBXL3	FBXO31	KCTD10	ANAPC4	WDTC1	FBXL19	FEM1B	KBTBD6	DCAF5	FBXO44	CUL4B	FBXL12	GLMN	ANAPC16	SPOP	KLHL25	TNFAIP1	SPSB2	TRPC4AP	DCAF13	DDB1	FBXO3	DCAF16	UBE2S	FBXL17	BUB1B	FBXO27	DCAF8	KCTD5	FBXW5	DCAF11	FBXO6	KLHL42	KBTBD7	DCAF10	APPBP2	DCAF12	CUL3	PCMTD1	ZSWIM8	FBXW11	USP47	ANKRD9	KLHL8	KLHL21	SKP1	FBXO4	KLHL2	LZTR1	DCAF17	RBX1	CUL9	DDA1	ANAPC13	PDCD6	CUL7	KLHL24	CDC23	KCTD13	FBXO45	FBXO32	KLHL7	DCAF7	CUL5	DDB2	FBXO7	ZYG11B	RNF7
+Cyclin-Dependent Protein Kinase Holoenzyme Complex (GO:0000307)		CKS1B	CKS2	CDK3	CCNF	CCNI	CDK13	CCNB2	MCM2	CCND1	CCNY	CDK5	CDK16	CCNE1	CCNE2	CDKN1A	CDK14	CCNG1	CDK2	CNPPD1	CCNB1	CCNK	CCNC	CCNL2	CCND3	CDK4	CCNG2	CDK1	CDK12	CCNA2
+Cytoplasmic Side Of Plasma Membrane (GO:0009898)		SYK	GRAMD1A	CHMP7	MIEN1	PTEN	ESYT2	LYN	S100A6	BIRC2	CHMP4C	SYAP1	SRC	AP2M1	PTPN3	PPP3CA	TRAF2	KCNAB2	TIRAP	EXOC7	LDLRAP1	RHOA	SAMD10	ERRFI1	STAC	RAB21	CYTH1	G6PD	AP2S1	AP2B1	PTK6	RGS2	FES	TRADD	ALOX15	CDH1	GM2A	JAK1	FARP1	CYLD	YES1	HTRA2	C2CD2L	RACGAP1	TYK2	IQGAP1	SNX5	MYD88	KRAS	FRMD6	FADD	PTP4A1	FRK	MAP2K2	MYH9	EZR	OSBPL2	LITAF	CHUK	CDK16	FERMT2	SNX18	PLEKHA4	PKP4	AP2A2	TRAF3	AP2A1	DLG1	GEM	DIABLO	JUP	RNF31
+Cytoplasmic Stress Granule (GO:0010494)		PABPC4	LARP1	PRKAA2	YTHDF1	ZFAND1	EIF4G1	ATXN2L	DHX36	GRB7	VCP	CAPRIN1	DDX19A	DDX19B	FXR2	LSM14A	ZFP36	PUM2	YTHDF3	ROCK1	FXR1	CIRBP	NUFIP2	HIPK2	RNF135	FMR1	SSB	YTHDF2	G3BP2	ZNFX1	RBM4	DDX1	PUM1	YBX1	RPTOR	MBNL1	TIA1	ELAVL1	PABPC1L	TIAL1	PABPC1	CELF1	LARP1B	EIF4E	STAU1	KPNB1	DYRK3	EIF2S1	G3BP1	LARP4B	RC3H1	DDX3X	EIF3B	DDX6	GIGYF2	HNRNPK	OGFOD1	TRIM25	LARP4	DAZAP2
+Cytoplasmic Vesicle Lumen (GO:0060205)		CAT	SRP14	DERA	PSMD12	PSMC3	PYGL	SERPINI1	PSMD2	CAND1	APRT	APAF1	OSTF1	PSMD7	GDI2	NFKB1	PKM	IMPDH1	SERPINB1	MVP	IMPDH2	ALAD	PSMD11	PSMB1	PPIA	PSMB7	HSPA8	PGAM1	GYG1	VCL	DYNLT1	DBNL	HSP90AA1	ACTR1B	ATG7	EEF1A1	PSMD6	MAPK14	PSMC2	CSTB	PSMA2	CFD	PAFAH1B2	IDH1	ARPC5	PSMD13	VCP	PRDX4	ROCK1	HSPA6	PSMD3	PPIE	HSP90AB1	COTL1	CAB39	PYCARD	DDX3X	EEF2	PNP	CTSH	ALDOA	ALDOC	AGL	PFKL	GSN	PGM2	COMMD9	HMGB1	PSMD14	GPI	XRCC6	HUWE1	S100A11	BACE1	XRCC5	PSMA5	CCT8	PDXK	CYFIP1
+Cytoplasmic Vesicle Membrane (GO:0030659)		VAC14	MYO1B	ARRB1	RHOB	CD63	VPS11	VPS33A	ANKFY1	LYN	KIF1B	ANTXR1	CHMP6	TOM1	CAMK2D	SLC12A2	VPS25	RNF144A	IRF7	APLP2	WASL	ITPR1	ATP6V0D1	PAM	RHOD	ATAD3B	ARHGAP1	TMED10	RPS27A	MME	MAP3K7	RAB7A	ZDHHC13	ATP6AP1	RAB5A	ATP6V0A1	ZDHHC17	IQGAP1	TPCN1	GOPC	FABP5	MYD88	PMEPA1	APH1A	APPBP2	UBB	ABHD17B	ALDH3B1	KIF13A	GGA2	RAB5B	TSG101	PLEKHF1	VAMP2	CAMK2B	CAMK2G	GPER1	VAMP5	SORT1	CLU	HTT	VOPP1	VPS4B	HBEGF	AP1S2	TMEM179B	ABHD17C	TFRC	RHOA	RAB6A	MVB12A	VPS37B	AP2S1	TOR1A	RFFL	AP2B1	MFSD10	TAB1	GPR89A	ABHD17A	AP1S1	ITPR3	RALA	TMEM175	GJA1	SLC30A4	LAMP1	SLC30A1	RHOQ	SLC30A5	PICK1	VAMP8	NCSTN	RHOG	RAB11A	SPPL3	INSR	C2CD5	DIAPH1	ITGB1	TMEM165	CD55	MCOLN1	ATP6AP2	ICA1	RAB26	RAB10	RAB35	PI4KA	TAB2	RAC1	RIPK1	AP3D1	SPIRE2	CLCN3	SLC48A1	VPS39	ACAP2	SMO	SLA2	COPB1	UBAP1	VPS41	UBA1	EGFR	PSENEN	SLC39A13	APH1B	ECE1	MDM2	PIKFYVE	ECE2	SERPINB6	ANTXR2	AP1B1	CD44	EXOC3	B4GALT1	MYO5B	RHOU	HLA-B	CORO1C	RAB18	TAB3	VPS45	SVIP	ERBB2	WLS	WDR83	SNX1	CHMP1B	ATP6V0E1	STAB1	VPS35	PTCH1	SNX2	TMEM184A	PLEKHM2	SNX17	APPL1	DYNC1LI1	TBC1D5	AP2A2	LAMTOR2	COLEC12	AP2A1	VPS16	RAB1A	TMBIM1	BACE1	CD9	SNX3	DNM2	LDLR	CTSD	AP1M2	SNF8	VPS37C	TCIRG1	GGA3	SCARB1	IRAK2	SLC18B1	VPS26A	GGA1	AP2M1	ORMDL3	PKD1	RAB4A	ATP6V0B	VPS28	AP1G1	RAB24	VPS33B	IRAK1	SNX9	SPPL2A	VPS37A	RAP1A	VPS37D	EHD1	SPIRE1	UBA52	DNAJC13	SCARB2	VPS18	VPS13A	SORL1	IGF2R	LAMTOR3	ITM2B	ATP6V0A2	ZNRF2	VPS4A	ATP6V0E2	RHOF	CLCN6	NOS3	AP1M1	IRAK4	ABCA3	HLA-C
+Cytoskeleton (GO:0005856)		MYO1B	ARPC1A	PFDN5	SHMT2	ILF3	ARPC2	ENKD1	CCNB2	ACTR2	FLII	PREPL	MYO6	OVGP1	MTRR	CDC42BPA	DCTN1	ACTR1A	MTUS1	TWF1	LAD1	AMBRA1	ANK3	MAP7D2	ANAPC7	CAPZB	TPM1	FHOD1	DDX60	KATNA1	CCDC146	PKN2	DYRK1A	ZNF131	LRRC27	CDCA8	CENPV	ACTN4	ACTR1B	WASL	KATNB1	TMEM9	PIK3R4	SPTBN1	FES	EML1	BIN1	KATNBL1	PALLD	ATP12A	DYNLL2	ABL1	VIL1	SYNM	ROCK1	MYO1E	ESRRA	ZYX	LLGL1	NOL3	SAMD14	CTTN	HTRA2	TBCA	SHROOM3	IQGAP1	MYO19	ODF3B	KLHL17	AKT1	MAP7	LCP1	ALDOA	CENPQ	EZR	BARX2	TOPBP1	CASP8	SCIN	PJA2	TUBB4B	EXD2	SPECC1L	PKP4	PARVA	CLK3	TUBG2	CAPZA1	ARHGEF2	WASF2	ZNF397	SLC9A3R1	TPX2	CLU	DSTN	PTK2	PSMD10	DDX20	NF2	CCT3	TUBB6	MYO1F	FAM161B	IFT43	SPATA7	NOL9	ADAM17	SLC30A9	KLHL20	DMTN	MVP	PCIF1	KIF18A	MDN1	NPM3	SMARCA2	PHIP	FOXM1	PAWR	DGKQ	PRC1	VCL	SYNE2	HSDL1	LIMA1	SMTN	DNAJA1	HOXA13	CDH26	PDLIM7	STON1	CKAP2L	PSRC1	PPP2R1A	GTSE1	ANLN	ITGB1BP1	MYLK	PPP1R9B	TRMT10A	TAX1BP3	SIPA1L1	MAST2	RHOG	TAF5	CDC42BPG	KIF2C	OFD1	HMMR	HSPB1	DYRK2	CHP1	MYH9	PPP1R9A	ABLIM1	FLNA	GSN	USP10	KIFAP3	MID1IP1	MYO5A	DYRK4	TBCB	KATNAL2	GAPDH	NUDCD2	NEURL1B	DBT	MYO5C	TBCC	CAPG	TRIOBP	RAC1	KIF3A	KRT8	TAOK1	SKA1	CDC42EP4	KANSL2	ABLIM3	VASP	SPTAN1	SESTD1	MPRIP	BCAS3	RBM39	HNRNPC	RIPK2	CAPZA2	PDLIM1	DHX9	UXT	FHOD3	ARPC3	RUSC1	ROCK2	TUBA1B	BIRC5	FAM83D	ARHGAP32	MYO9B	MYO5B	TUBB3	P4HB	CNN3	AKAP9	TAGLN2	CORO1C	ADD1	NSMF	ARHGAP33	INCENP	SVIL	TMEM63B	LYST	PPP1R12A	APEX1	DYRK3	TPM4	KLF4	MMP14	ARPC5	ARSJ	CDH1	CLIC4	TUBA1C	NAV1	EML3	ARL3	LIMD2	KNTC1	NDRG1	KIF3B	HAX1	PPP2CA	CFL2	MAPK1	EPB41L5	NCOA5	ATXN7	MYO1D	LRRFIP1	NISCH	SDCBP	KLHL2	LRPPRC	IPP	APBB3	PARVB	PLEC	SCNN1D	CCSER2	FLNB	JUP	TUBGCP4	MPZL2	ACACA	CASK	CD2AP	EPPK1	HINT1	TAOK2	EPB41L4B	KLHL22	SOX9	CKAP2	PRKCI	MAP7D1	CTTNBP2NL	SWAP70	WASF1	AGBL5	AURKB	ARHGDIA	PDLIM5	ANG	CKAP5	MARCKS	CFL1	TUBA4A	PINK1	ACTG1	AURKA	MARK1	MAEA	SAP30BP	NINL	GTF2F2	HIP1	CENPE	IQCB1	EPB41	TTC17	BAIAP2L1	CROCC	ARHGAP21	AIF1L	TPM3	DBN1	ARL2	MSRB1	CLIP1	AKAP13	MAPK3	BAIAP2	CALD1	ARHGAP6	SLAIN2	ING4	STOML2	NDC1	INTS6	MYO1C	MACF1	CNN2	TUBA1A	THAP6	STK38L	CDC42BPB	TPM2	ADD3	DST	ALDOC	AHNAK	MTSS1	ACTR3	PLK1	DTNBP1	DYNLL1	CDK5RAP2	CDK16	BICD1	IFIT5	ACTB	CTNS	NES	RHOF	SPAST	ZNF74	BASP1	EVPL	ARPC1B	RASSF1	CCT8	RAC3	TRIP6
+Cytosolic Large Ribosomal Subunit (GO:0022625)		RPL31	RPLP2	RPL29	RPL10A	RPL39	RPL14	RPL37	RPL5	RPL15	RPL18A	RPL3	RPL35	RPL6	RPL26L1	RPL32	UBA52	RPL18	RPL34	RPL26	RPL36	RPLP0	RPL22	RPL11	RPL9	RPL24	RPL41	RPL21	RPL30	RPL37A	RPL8	RPL7A	RPL12	RPLP1	RPL7L1	RPL38	RPL39L	RPL4	RPL13	RPL35A	RPL13A	RPL19	RPL36AL	RPL7	RPL28	RPL27A	RPL27	RPL23A
+Cytosolic Small Ribosomal Subunit (GO:0022627)		RPS3A	RPS27A	RPS19	RPS28	RPS13	MRPS12	RPS29	RPS6	RPS4X	RPS23	UBA52	RPS27	RPS15A	RPS25	RPS11	RPS5	RPS24	RPS20	RPS8	RPS4Y1	RPSA	RPS26	RPS21	RPS2	RPS18	RPS15	RPS16	RPS3	RPS7	RPS9	EIF2S1	RPS27L	RPS14	FAU
+Dendrite (GO:0030425)		CRIPT	RPS6	GPER1	CD2AP	HOMER1	PI4K2A	CNIH4	CLU	HTT	CAPN2	CDK5	GPHN	GSK3B	EPHB3	SMO	KIF1B	STRN4	ALS2	DHX8	SYAP1	NF1	ANK3	GIGYF2	MAPK8IP3	COMT	ATP7A	SLC6A6	DYRK1A	SPG11	ZNF385A	FOXM1	MARK1	MLPH	HSPA8	HIP1R	TUBB3	TRAK2	SARM1	COBL	TRAPPC4	MCRS1	NSMF	RGS12	MTMR2	FZD4	DIP2B	HDAC6	APEX1	BIN1	GCHFR	CHRNA3	MARK3	RPL28	FGF13	DBN1	GRIN1	ABL1	GABRA4	GSK3A	KIF1A	MME	FARP1	ZFYVE27	ATXN10	RAB27A	ZWINT	PLK2	WFS1	RAB5A	PPP1R9B	PTK2B	SAMD14	KIF1C	ZC3H14	MARK2	KIF3B	MAPK8	CPEB3	RBM3	BNIP3	INSR	SOD1	TMEM222	HOMER2	NCDN	PRKAA2	MYO1D	PPP1R9A	SACS	DHX36	STRN3	FXR2	GABRA2	PAK1	SCGN	FXR1	CPEB4	KPNA1	TRAK1	FMR1	INPP5A	MAP2	RGS14	BAG2	RAB17	MAP1S	PRNP	PRKAA1	STAT1	STAU1	OPA1	SGCE	UHMK1	ACAD9	HOMER3
+Early Endosome (GO:0005769)		VAC14	MYO1B	SNX12	HPS3	VPS11	VPS33A	ABCB9	ANKFY1	PXK	ALS2	ASAH1	STEAP2	TOM1	AP3M1	WASH4P	COMMD1	HLA-E	LRP6	VPS8	RUFY1	ATP6V0D1	ITCH	SLC11A2	SNX13	B2M	RAB11FIP5	STX8	MME	AP4M1	RAB5A	LLGL1	PTPN23	TPCN1	SNX6	PMEPA1	SNX7	EHD4	ZFYVE28	NAPEPLD	GGA2	HPS5	TMEM127	RAB5B	TSG101	PLEKHF1	WDFY1	SNX21	IFITM3	MAP2K1	GPER1	SORT1	HTT	SNX16	NF2	AP1S2	PLEKHA3	STX6	ATP7A	ZFYVE26	LNPEP	LAPTM4B	DTX3L	KIF16B	AP1S1	SLC2A13	PRDX3	VAMP8	PICK1	PLEKHJ1	TMEM230	RABEP1	PI4K2B	TBC1D16	USP10	ATP13A3	MYO5A	USP8	TRIM3	NEURL1B	RAB5C	TM9SF4	AP3B1	ANKRD27	HLA-A	AP3D1	MON2	PI4K2A	TMEM30A	MMGT1	LDLRAD4	CLCN3	SNX27	SLC31A1	ATP11B	EGFR	LMTK2	OCRL	PIKFYVE	BOK	VTI1B	AP1B1	RUSC1	VIPAS39	LDLRAP1	TBC1D2B	RAPGEF1	RAB21	HLA-B	HPS6	MGRN1	WLS	ZFYVE16	SNX1	VPS35	AP3S1	TMEM184A	MAPK1	MAP2K2	UBXN6	SNX17	APPL1	HSPD1	SNX4	RAB32	VPS16	BACE1	AP3S2	SNX3	FLOT1	LDLR	CLN6	RPS6KC1	ATP9A	GGA3	EEA1	PICALM	VPS26A	GGA1	RAB22A	RAB4A	HGS	RAB14	VPS28	AP1G1	VPS33B	RAP1A	APP	EHD1	MAPK3	WDR91	ANKRD13B	DNAJC13	SORL1	IGF2R	STX7	PLEKHF2	VPS26B	SLC39A14	SNX8	CMTM6	VPS4A	BAIAP3	PLD3	TRAK1	PTPN1	UVRAG	CTNS	RAB17	F2RL1	CLN3	MTMR4	AP1M1	CHMP1A	WDR81	HLA-C	PPP1R21
+Early Endosome Membrane (GO:0031901)		VAC14	SNX12	MON2	PI4K2A	TMEM30A	LDLRAD4	SLC31A1	ATP11B	ATP9A	EGFR	GGA3	GGA1	OCRL	PIKFYVE	BOK	WASH4P	VTI1B	ATP7A	HLA-E	RAB4A	LRP6	RAB14	RUFY1	RAB21	VPS33B	HLA-B	EHD1	B2M	WLS	WDR91	DNAJC13	RAB5A	ZFYVE16	LLGL1	SNX1	RABEP1	PI4K2B	SNX5	TPCN1	SNX6	TMEM184A	PMEPA1	SLC39A14	SNX8	UBXN6	ZFYVE28	LITAF	CMTM6	ATP13A3	BAIAP3	PLD3	GGA2	SNX4	RAB5C	RAB5B	CLN3	MTMR4	SNX21	HLA-A	WDR81	HLA-C	IFITM3	SNX3
+Endocytic Vesicle (GO:0030139)		CAMK2G	RAB13	VPS11	CLCN3	ANXA11	STAM2	ARF6	RAPGEF6	SMO	MYO6	HYOU1	LYN	CLTB	RAB9A	PDIA3	TNFRSF25	RAB8B	SCARB1	HBEGF	PICALM	RAB11B	OCRL	MDM2	RAB22A	VPS9D1	AP2M1	HEATR5A	CAMK2D	TIRAP	RAB14	RIN2	HSP90AA1	WASL	AP2S1	CALR	ARRB2	AP2B1	DVL2	EHD1	ITGB5	MTOR	HSPH1	RAB11FIP5	RALA	RAB11FIP3	HYAL2	RPS27A	WLS	CLTA	GOLIM4	RAB7A	MYO1E	STX12	UBA52	PICK1	RAB5A	SCARB2	CTSL	CTTN	STAB1	RABEP1	RAB11A	GAPVD1	IGF2R	ABCD1	STX7	PTCH1	ZDHHC5	LMBRD1	UBB	EHD4	SFTPA2	MTSS1	CLTC	FLOT2	RAB35	LPAR2	AP2A2	HSP90B1	NOS3	COLEC12	ITGAV	AP2A1	RAB17	RAB20	RAB32	RAB5B	RAB11FIP4	RAB34	RAB8A	CAMK2B	CD9	DNM2
+Endocytic Vesicle Membrane (GO:0030666)		ANXA3	CAMK2G	LDLR	SMO	LYN	TAP2	TCIRG1	EGFR	SCARB1	HBEGF	MDM2	PIKFYVE	AP2M1	ATP7A	EGF	TFRC	CAMK2D	HLA-E	LDLRAP1	ATP6V0B	PIK3C3	HLA-B	WASL	AP2S1	CALR	AP2B1	FZD4	PIK3R4	ATP6V0D1	B2M	SLC2A8	RPS27A	WLS	RAB7A	UBA52	VAMP8	PICK1	ATP6V0A1	M6PR	RAB5A	SCARB2	ATP6V0E1	STAB1	TAPBP	STX4	SNAP23	IGF2R	TAP1	PTCH1	ATG12	UBB	TGOLN2	SLC11A1	ATP6V0A2	CLTC	ATG5	VAMP3	ATP6V0E2	RAB35	AP2A2	NOS3	COLEC12	AP2A1	HLA-A	VAMP2	CAMK2B	HLA-C	CD9	DNM2	VAMP4
+Endolysosome (GO:0036019)		CLTA	CTSB	LDLR	CLTC	RNF167	CTSL	AP2A2	AP2S1	AP2B1	AP2A1	SLC15A4	TPCN1	PRKCD	LGMN	SMPD1	ATG16L1	AP2M1
+Endoplasmic Reticulum Lumen (GO:0005788)		GPX7	FAM20C	ARSD	OS9	CLN6	ADAM10	CP	ERAP1	HYOU1	H6PD	POGLUT1	FOXRED2	TOR1B	RNASET2	TIMP1	PDIA3	P4HA1	CTSC	FUCA2	IGFBP7	ADAM17	COL7A1	CRTAP	VWA1	ERLEC1	KTN1	FSTL1	MINPP1	CALU	GOLM1	LTBP1	P4HB	FN1	DNAJC10	UGGT2	APLP2	PDIA6	FKBP14	TOR1A	CALR	SLC27A2	HSPA5	CST3	STC2	NUCB1	LAMB2	MGAT4A	PDIA5	APP	SHH	MXRA8	TSPO	TXNDC16	B2M	LAMC1	DNAJC3	LRPAP1	LGALS1	MIA3	P4HA2	TMEM132A	TSPAN14	ARSJ	MAPK3	PDGFA	ARSK	MEN1	EOGT	SERPINH1	COLGALT1	SHISA5	WFS1	COL6A1	COL18A1	CANX	UGGT1	TSPAN33	ESD	TXNDC12	CTSZ	ERP44	CNPY3	ANO8	GANAB	MAPK1	MANF	VCPIP1	TOR2A	MBTPS1	SUMF2	TGOLN2	DAG1	JMJD8	THBS1	PPIB	RCAN1	COL6A2	PRSS23	TOR3A	QSOX1	ERAP2	IGFBP3	HSP90B1	LAMB1	COL9A3	SDC2	ERP29	DNAJB11	BACE1	CKAP4	SUMF1	TSPAN15	TXNDC5	F8	PRKCSH	CCNA2	PNPLA2
+Endoplasmic Reticulum Membrane (GO:0005789)		PCYT1A	PCYT2	VTI1A	RB1CC1	DGAT1	UBIAD1	ESYT2	LMAN1	PMEL	CYB5A	ABCB9	MOGS	TAP2	PSMD2	ESYT1	SRI	PIGV	EIF2AK3	ACSL1	DNM1L	G6PC3	JAGN1	TMX2	VMA21	AUP1	CAMLG	FDFT1	SMPD4	ANXA7	SLC30A7	ANKLE2	SCD	PLOD3	MBOAT2	PTDSS1	HSD3B7	HLA-E	ELOVL7	DNAJB9	TMCO1	NSDHL	GALNT2	ERLIN2	PDIA6	PLA2G4C	TECR	WASL	DDRGK1	CDIPT	ITPR1	VKORC1	DNAJC25	TMEM33	LMF2	DNAJB12	ERLIN1	COPZ1	CDK1	SRPRB	CTDNEP1	SLC27A5	TMED10	CHERP	LSS	SURF4	RPS27A	RPN2	MBLAC2	TMED7	VCP	PIGL	ELOVL6	SEC61A1	STARD3NL	EXT2	LPIN2	POFUT2	SERINC1	CANX	HTRA2	ALG13	CERS2	TAPBP	VRK2	HRAS	TMEM129	ATL3	DERL1	ERP44	ATXN3	SPTLC1	CYB5RL	CIDEB	SREBF1	ALG12	CLPTM1L	UBB	PTDSS2	SPTLC2	ICMT	STX5	REEP4	PPP1R15A	MTDH	STX18	SLC27A4	SEC61B	SERP1	LMAN2L	TEX264	LBR	MBOAT7	SGPP1	COPG1	RNF103	FICD	PNPLA2	GRIN3A	SACM1L	GRAMD1A	ATL2	GDPD3	NCEH1	KDELR1	TMX1	VPS13C	CEPT1	PIGQ	STIM1	MYRF	BFAR	TUSC3	ATF6B	AHCYL1	TMEM39A	NRAS	CERS6	GJB1	LMBR1L	POMT1	GNAI3	CYP39A1	SEL1L	MCFD2	RHOA	CYP2R1	EMC3	RAB6A	FITM2	DERL3	PNPLA6	SPCS1	ABCB6	YIF1B	TOR1A	CALR	ABHD4	CYB5R1	ABCD4	DNAJA1	UGT2B15	POR	PEX16	MUC1	PGAP1	SPCS3	MBOAT1	BSCL2	ITPR3	GJA1	DAD1	GRIN1	ARV1	GPAA1	COPZ2	PIGO	SEC24D	VKORC1L1	ACSL3	LPIN3	RDH11	GOSR2	PIGN	PREB	KDSR	SLC39A7	ULK1	CD59	RNF121	DPAGT1	PML	PIGS	NECAB3	CYP51A1	ERN1	PI4K2B	RHOG	SEC24A	STT3A	TBC1D20	SPPL3	TAP1	CYP2U1	AMFR	OST4	VAPB	KRAS	GPSM1	PGAP2	SPTSSA	SREBF2	YIF1A	PIGB	LPGAT1	SFTPA2	ATP6AP2	EPHX1	ATP2A2	TM7SF2	EMC4	NOTCH1	SAMD8	CYB5R4	PITPNB	LPIN1	RAB10	PLOD2	CYB5R3	TMED3	ARL6IP1	DPM1	ADPGK	HLA-A	OSTC	RYR1	DNAJB14	PLD2	RAC1	SPCS2	RHOC	UBA5	HPN	SRD5A3	DEGS2	MMGT1	CNIH4	ATP2A1	TMBIM6	PIGA	HSD17B7	GGCX	CCDC47	CDS1	COPB1	DDOST	SEC13	EMC1	IKBIP	UBA1	ARCN1	ATP2A3	PLP2	ACSL5	PIGK	STX17	ATG13	SEC11A	USP19	SPTSSB	PAFAH2	ALG9	CERS5	SLC39A13	BNIP1	DHRS4	KTN1	BOK	RCE1	VTI1B	REEP3	TMEM14A	DHDDS	ILVBL	SEC23A	ASPH	ALG1	SAR1B	FZD6	UFL1	ALG3	DNAJC18	HLA-B	SPTLC3	SLC27A2	PIGH	EXT1	HSPA5	RAB3GAP2	COPG2	RAB18	HM13	SVIP	CISD2	MLEC	TMEM170A	ELOVL4	MIA3	AGPAT2	SQLE	APOO	ZFYVE27	LTC4S	SSR1	RAB3GAP1	MSMO1	PIGG	INSIG1	VAPA	GBA2	EDEM1	FAAH	PGAP3	TREX1	SEC24C	RDH14	DPM2	CHPT1	CYP2J2	GORASP2	ATG9A	RTN4	EMC7	USE1	SC5D	ATG9B	ATL1	ACER3	ALG8	GALNT1	PON1	STARD3	LMAN2	MGST2	MGLL	ZDHHC20	TMEM41B	RNF185	UNC93B1	LPCAT1	ZFYVE1	BCAP29	LPCAT3	UBE2J1	PLOD1	DNAJC16	FADS1	SLC37A3	EXTL2	TYRO3	MGST1	TMEM38A	TMEM38B	EMC2	HMGCR	GDPD1	OS9	INSIG2	TMTC2	PIGC	RHBDF1	DHCR7	ATG14	MPDU1	NOTCH4	BCAP31	PTGS1	ORMDL1	TMEM147	PIGP	STT3B	CLGN	NCLN	SEC24B	SIK2	ATF6	CALU	SRD5A1	RNF139	DPM3	LMF1	RNF26	DHCR24	AGPAT5	ALDH3A2	TRIM13	BAX	LRRC8E	SPPL2A	RAB1B	ALG6	PDIA5	RETSAT	UBQLN4	RDH10	SEC11C	ELOVL5	ALG5	ALG14	HMOX2	TMED2	WDR83OS	PIGT	CERS4	THADA	SLC37A1	TRAM1	ATP13A1	PIGW	TMX3	LCLAT1	DOLPP1	KDELR2	SGPL1	SOAT1	MAGT1	SEC31A	UBA52	ACSL4	JPH1	WFS1	MGST3	SCARB2	DEGS1	DERL2	VPS13A	HSD17B12	EMC6	ABCD1	GLB1	COPB2	SLC35B1	DHRS7	HERPUD1	SYVN1	LMBRD1	EMC10	AGPAT1	SEC16A	HMOX1	SLC37A4	COPE	DGAT2	COPA	PIGM	PNPLA8	SLC35D1	TBL2	TMEM258	FKBP1B	CDS2	ABHD12	UBE2J2	ELOVL1	GRAMD1C	VMP1	DTNBP1	DHRS3	RNF5	TMED9	RTN3	PLD3	PTPN1	AGPAT3	CNIH1	PDCD6	HSP90B1	NOMO1	NOTCH2	SBF1	CLN3	PYURF	KDELR3	WDR81	HLA-C	OSBP	CDC42	IER3IP1	RAC3	RYR2
+Endoplasmic Reticulum Tubular Network (GO:0071782)		ARV1	ATL1	REEP3	ATL2	REEP4	ZFYVE27	ASPH	REEP5	RAB3GAP1	STIM1	PARP8	RAB10	PARP16	C2CD2L	RNF41	ATL3	RAB18	KPNB1	EMD	RTN4
+Endoplasmic reticulum-Golgi Intermediate Compartment Membrane (GO:0033116)		TMED2	MGAT1	WHAMM	TMED7	MCFD2	GALNT1	CNIH4	STX5	TMED9	KDELR1	GOSR2	GORASP1	LMAN1	GOLGA2	CD59	TMEM199	UVRAG	CNIH1	TAP2	CALR	TAPBP	TMED3	TBC1D20	ZDHHC9	CTSZ	SPPL3	RAB1B	COL7A1	TAP1	CTSC	YKT6	BET1	CD55	CSNK1D	F8	TMED10
+Endoribonuclease Complex (GO:1902555)		AGO3	POP5	AGO4	POP1	DHX9	POP7	RPP25L	POP4	RPP40	RPP25	RPP30	TSNAX	PRKRA	DICER1	TSN	AGO2	TARBP2
+Endosome Membrane (GO:0010008)		VAC14	MYO1B	SNX12	RHOB	CD63	VPS11	VTI1A	VPS33A	ANKFY1	ANXA6	PXK	ANTXR1	CHMP6	TOM1	USP50	WASH4P	HLA-E	LRP6	VPS25	RUFY1	RNF144A	IRF7	APLP2	SCAMP4	ATP6V0D1	RHOD	SLC11A2	ARHGAP1	B2M	RPS27A	CLTA	MAP3K7	RAB7A	STARD3NL	ATP6AP1	RAB5A	ATP6V0A1	LLGL1	RAB12	TPCN1	SNX6	MYD88	PMEPA1	APH1A	UBB	EHD4	ABHD17B	ZFYVE28	LZTR1	SNX18	KIF13A	GGA2	RNF167	RAB5B	TSG101	PLEKHF1	SNX21	IFITM3	SORT1	SNX16	VPS4B	SLC31A2	SLC39A4	ABHD17C	ATP7A	TFRC	LAPTM4B	MVB12A	VPS37B	ABCB6	AP2S1	RFFL	AP2B1	TAB1	ABHD17A	RAB11FIP3	TMEM175	SLC30A4	LAMP1	GOSR2	VAMP8	NCSTN	RABEP1	PI4K2B	RAB11A	SCAMP2	INSR	ITGB1	TMEM165	MCOLN1	ATP6AP2	ATP13A3	USP8	VAMP3	RAB35	RAB5C	HLA-A	PACSIN2	TAB2	RAC1	RIPK1	AP3D1	MON2	PI4K2A	TMEM30A	LDLRAD4	CLCN3	SLC31A1	SLC48A1	VPS39	ACAP2	ATP11B	SLA2	UBAP1	VPS41	UBA1	EGFR	PSENEN	SCAMP3	RAB11B	LAPTM4A	APH1B	OCRL	ECE1	PIKFYVE	ATG16L1	ANTXR2	BOK	VTI1B	LAMTOR5	RHOU	RAB21	HLA-B	CORO1C	LAMTOR1	SLC15A4	TAB3	VPS45	ERBB2	LAMP2	WLS	WDR83	ZFYVE27	ZFYVE16	SNX1	CHMP1B	ATP6V0E1	VPS35	NDRG1	SNX2	TMEM184A	LAMTOR4	ATG9A	RAP2B	UBXN6	ATG9B	PLEKHM2	SNX17	APPL1	STARD3	TBC1D5	AP2A2	LAMTOR2	SNX4	AP2A1	VPS16	RAB11FIP4	TMBIM1	RAB8A	BACE1	SNX3	IFITM2	LDLR	CTSD	SCAMP1	SNF8	ARF6	VPS37C	RAP2A	ATP9A	TCIRG1	GGA3	PDIA3	RAB8B	ANXA2	IRAK2	VPS26A	GGA1	AP2M1	RAB4A	RAB14	ATP6V0B	VPS28	VPS33B	RAP2C	IRAK1	VPS37A	RAP1A	VPS37D	EHD1	WDR91	ATP13A2	UBA52	OPTN	DNAJC13	SCARB2	VPS18	VPS13A	SORL1	IGF2R	CYB561A3	LAMTOR3	SCAMP5	RNF13	SLC11A1	SNX8	SLC39A14	ATP6V0A2	CLTC	VPS36	CMTM6	VPS4A	BAIAP3	PLD3	ATP6V0E2	CLCN6	RAB17	CLN3	MTMR4	IRAK4	WDR81	HLA-C
+Euchromatin (GO:0000791)		RBMX	EXOSC4	DNMT3A	KMT2E	PELP1	PSIP1	CTR9	SETD5	EXOSC10	TCF3	CREB1	ZC3H8	ELL	EXOSC3	TBP	NSMF	BCAS3	RUVBL2	CTNNB1	ID2	JUN	CBX3	EXOSC5	SIRT1
+Exocytic Vesicle Membrane (GO:0099501)		UNC13B	CLTA	ICA1	RAB26	DTNBP1	GABRA2	SYNGR1	SEMA4C	PTPRS	CLTB	VAMP2	SYPL1	SLC18B1	SYNGR2	SV2A
+Extracellular Membrane-Bounded Organelle (GO:0065010)		EFEMP2	MGAT1	TFRC	SDCBP	CLTC	SLC12A2	COL6A2	ATP1B1	IFT172	GNAI2	TUBB4B	VCL	MAN1B1	SPTAN1	NOL3	GNB1	ATP1A1	PCMT1	PEG10	ARRDC4	CBR1	PDCD6IP	SLC11A2	CD9	PKM	CTSF	ARRDC1	E2F1	DNAJC3
+Extracellular Vesicle (GO:1903561)		EFEMP2	MGAT1	TFRC	SDCBP	CLTC	PROM2	SLC12A2	COL6A2	ATP1B1	IFT172	GNAI2	TUBB4B	VCL	MAN1B1	E2F1	SPTAN1	NOL3	GNB1	ATP1A1	PCMT1	ARRDC4	PEG10	PDCD6IP	SLC11A2	CD9	PKM	CTSF	ARRDC1	CBR1	DNAJC3
+Extrinsic Component Of Cytoplasmic Side Of Plasma Membrane (GO:0031234)		SYK	GRAMD1A	ESYT2	LYN	S100A6	SYAP1	SRC	GNAI3	GNG5	KCNAB2	GNB5	TIRAP	RHOA	GNAI2	ERRFI1	GNAQ	STAC	CYTH1	GNB1	GNA13	PTK6	FES	GNAS	JAK1	FARP1	GNAL	GNAI1	GNA11	YES1	RACGAP1	IQGAP1	MYD88	KRAS	FRK	GNA12	OSBPL2	CDK16	FERMT2	SNX18	PLEKHA4	GNB2
+Ficolin-1-Rich Granule (GO:0101002)		KCMF1	CTSB	CAT	SRP14	CTSD	CDK13	CLU	LTA4H	DERA	ACTR2	GNS	PSMD12	UBR4	PDAP1	PSMC3	COPB1	PYGL	HSPA1B	PSMD2	QPCT	CAND1	TCIRG1	ACTR10	ASAH1	APAF1	OSTF1	PRCP	PSMD7	HSPA1A	TMEM179B	PKM	SERPINB6	IMPDH1	MVP	IMPDH2	ALAD	PSMD11	PSMB1	RHOA	GUSB	PPIA	PSMB7	HSPA8	PGAM1	ENPP4	ARL8A	GYG1	VCL	DYNLT1	DBNL	HSP90AA1	ACTR1B	ATG7	EEF1A1	LAMTOR1	CST3	PSMD6	MAPK14	ILF2	PSMC2	KPNB1	ATAD3B	CSTB	LAMP2	PSMA2	CFD	PAFAH1B2	LAMP1	IDH1	ARPC5	PSMD13	APEH	VCP	CAPN1	PRDX4	CANT1	ATP6V0A1	HSPA6	PSMD3	FTH1	PPIE	HSP90AB1	CTSZ	COTL1	GAA	GLB1	CAB39	DIAPH1	MAPK1	DDX3X	EEF2	NBEAL2	CD55	GSDMD	PNP	CTSH	ALDOA	SLC11A1	ALDOC	AGL	PFKL	DSP	ATP6AP2	DYNC1LI1	GSN	PGM2	COMMD9	DYNLL1	PGM1	TIMP2	HMGB1	ACLY	PSMD14	COMMD3	AP2A2	LRG1	GPI	XRCC6	YPEL5	HUWE1	JUP	PSMA5	CCT8	RAC1
+Ficolin-1-Rich Granule Lumen (GO:1904813)		KCMF1	CTSB	CAT	SRP14	CTSD	CDK13	LTA4H	DERA	ACTR2	GNS	PSMD12	PDAP1	PSMC3	PYGL	HSPA1B	PSMD2	QPCT	CAND1	ACTR10	ASAH1	APAF1	OSTF1	PSMD7	HSPA1A	PKM	IMPDH1	MVP	IMPDH2	ALAD	PSMD11	PSMB1	GUSB	PPIA	PSMB7	HSPA8	PGAM1	GYG1	VCL	DYNLT1	DBNL	HSP90AA1	ACTR1B	ATG7	EEF1A1	CST3	PSMD6	MAPK14	ILF2	PSMC2	KPNB1	CSTB	PSMA2	CFD	PAFAH1B2	IDH1	ARPC5	PSMD13	APEH	VCP	CAPN1	PRDX4	CANT1	HSPA6	PSMD3	FTH1	PPIE	HSP90AB1	CTSZ	GLB1	COTL1	CAB39	MAPK1	DDX3X	EEF2	GSDMD	PNP	CTSH	ALDOA	ALDOC	AGL	PFKL	GSN	PGM2	COMMD9	PGM1	TIMP2	HMGB1	ACLY	PSMD14	COMMD3	LRG1	GPI	XRCC6	YPEL5	HUWE1	JUP	PSMA5	CCT8
+Ficolin-1-Rich Granule Membrane (GO:0101003)		LAMP1	SLC11A1	DSP	ATP6AP2	DYNC1LI1	RHOA	CLU	DYNLL1	ENPP4	ARL8A	UBR4	ATP6V0A1	COPB1	AP2A2	TCIRG1	LAMTOR1	GAA	PRCP	ATAD3B	DIAPH1	LAMP2	TMEM179B	RAC1	NBEAL2	SERPINB6	CD55
+Filopodium (GO:0030175)		MYO1B	DAG1	VIL1	EZR	FXR2	RDX	PODXL	FXR1	MYO10	UTRN	ARF6	TUBB3	TWF2	FMR1	NF2	PPP1R9B	SYNE2	MAP2	CXADR	ITGAV	ITGA3	SPATA13	ANTXR1	TWF1	CDC42	ITGB1	FGF13	LCP1
+Focal Adhesion (GO:0005925)		RPS19	PRSS8	RHOB	RSU1	ARPC2	YWHAQ	ACTR2	ADAM10	YWHAZ	HYOU1	ANXA6	DCAF6	SNTB1	RPL4	TWF1	ARPC5L	ILK	RPS3A	RPS13	GRB7	PPIA	CSRP1	ACTN4	LIMD1	ALKBH6	CTNNB1	PABPC1	RPS3	FES	YWHAE	PXN	PALLD	B2M	HMGA1	ADAM9	MME	RPL6	ITGB7	ZYX	CD151	RPL30	RPL37A	LIMS1	CTTN	RPS8	IQGAP1	EFNB2	RPS14	LCP1	GNA12	EZR	RPL18	RPL9	PARVA	CTNNA1	MAPRE1	RPL19	ARHGEF2	MAP2K1	KIF23	FZD1	CYFIP1	RPL31	PTK2	SENP1	RPL7A	NEDD9	CAPN5	RPS16	CD46	RPL13A	USP33	ADAM17	SRC	HNRNPK	RPLP2	LPP	RHOA	PPFIBP1	PPP1CC	PRKAR2A	YWHAB	VCL	SYNE2	SLC4A2	CALR	GNA13	LIMA1	RPL38	ITGB5	RPL27	RALA	GJA1	PDLIM7	GIT1	NUMB	FOCAD	CAPN1	JAK1	ALCAM	ITGB1BP1	PTK2B	CD59	NCSTN	RHOG	SNAP23	ANXA5	HSPB1	ITGB1	KRAS	CD99L2	CHP1	MYH9	FLNA	NPM1	GSN	SNTB2	HSPA9	LMO7	RAB10	CD81	HSPG2	PI4KA	ITGA3	RPS18	DOCK7	PACSIN2	TRIOBP	RPL7	RAC1	SRP68	GNB2	RPL3	ARF1	VASP	MPRIP	HSPA1B	EGFR	RPS2	KLF11	PDLIM1	RPS7	GDI2	PIP5K1A	TSPAN4	ARPC3	PAK4	RPS29	CD44	EVL	PFN1	HSPA8	MDC1	P4HB	CNN3	RAB21	RPL12	CORO1C	ADD1	HSPA5	RPLP1	SVIL	MCAM	TNS3	PPP1R12A	TES	ACTN1	TPM4	CDC42EP1	AKAP12	MMP14	ARPC5	RRAS2	ASAP3	RPL22	RPS5	YES1	ARHGEF7	PDCD6IP	MAPK1	MAP2K2	ARL14EP	MPZL1	LPXN	FGFR3	ENAH	PARVB	PLEC	PROCR	DAB2	G3BP1	FLNB	JUP	CD9	REXO2	DNM2	FLOT1	CASK	RPL10A	CAT	PCBP2	RPL5	TGM2	CAPN2	ARF6	RPL8	CORO1B	PDIA3	HSPA1A	MARCKS	CFL1	BCAR3	ACTG1	BSG	RDX	TLN1	MAP4K4	PTPRA	RPLP0	PPFIA1	SLC9A3R2	YWHAG	BCAR1	CPNE3	GIT2	STX16	PTK7	AIF1L	ARL2	MAPK3	PPP1CB	RPS11	SCARB2	CNN2	LASP1	ITGA6	SORBS3	NCKAP1	IGF2R	TLE2	TSPAN9	LAMTOR3	ARMC5	DST	DAG1	AHNAK	RPS4X	ACTR3	ATP6V0A2	CLTC	PPIB	DYNLL1	FLOT2	FERMT2	FAT1	ACTB	CLASP2	HSP90B1	PVR	ITGAV	TMEM98	RPS15	ARPC1B	RPS9	CSRP2	CDC42	TRIP6
+Glutamatergic Synapse (GO:0098978)		TANC1	SH3GL1	GRIPAP1	GSK3B	YWHAZ	ARHGAP39	PIN1	RHOA	AKAP9	RAP1A	ACTN1	DYNLL2	VPS18	STX4	HRAS	RAB11A	TRIO	APPL1	DLGAP4	BCR	RELA	ACTB	RAC1	RAC3
+Heterochromatin (GO:0000792)		SMARCA5	CENPC	ORC2	BAZ1A	ATRX	POLE3	MPHOSPH8	MECP2	TNKS1BP1	WDR76	ZBTB18	SUV39H1	MORC2	BAZ1B	CBX1	CBX2	HELLS	SIRT2	FLYWCH1	BEND3	INCENP	LRWD1	CHRAC1	BAZ2A	NCAPD3	SIRT6	SMARCAD1	RRP8	CBX3	HMGA1	CBX5	CDKN2A	SIRT1	UHRF2
+Histone Acetyltransferase Complex (GO:0000123)		KAT2A	WDR5	MEAF6	TAF5L	KANSL1	TADA2B	KANSL2	ING4	TADA2A	OGT	HCFC1	KAT8	EP300	MCRS1	SUPT20H	PHF20	BRPF3	KANSL3	KAT2B	KAT7	BRPF1	CREBBP
+Intercalated Disc (GO:0014704)		DSP	PAK1	PKP2	CXADR	PIK3CA	DSG2	OBSL1	DLG1	DSC2	TMEM65	JUP	YWHAH	RANGRF	ANK3	FGF13	ATP1B1	GJA1
+Intermediate Filament (GO:0005882)		DST	GPER1	CLIP1	DSP	EPPK1	FAM83H	PNN	SLC1A4	SYNM	FBF1	KRT18	MACF1	TCHP	NES	PKP2	PLEC	NCKIPSD	CSNK1A1	EVPL	TLK2	KRT10	KRT8
+Intermediate Filament Cytoskeleton (GO:0045111)		PFDN5	EPPK1	PNN	PSMD10	MTRR	SESTD1	PKP2	BCAS3	NCKIPSD	NOL9	DDX60	MDN1	SLC1A4	PKN2	SMARCA2	ZNF131	KRT18	SAP30BP	SYNE2	HSDL1	TLK2	HOXA13	KRT10	MMP14	CLIP1	STON1	SYNM	ING4	MACF1	DST	DSP	USP10	PJA2	EXD2	CTNS	NES	CLK3	PLEC	RAD51	EVPL	CCT8	KRT8
+Intracellular Organelle Lumen (GO:0070013)		MDH2	POLDIP2	CTSB	OXCT1	GPX7	CD63	ETFA	DECR1	SHMT2	ME2	LTA4H	ALKBH7	ACTR2	GNS	ADAM10	CP	ERAL1	HYOU1	IBA57	POGLUT1	PCSK6	ISCA2	PSMD2	ACO2	ALDH4A1	DARS2	ASAH1	IDH3B	TST	PSMD7	IGFBP7	PITRM1	COL7A1	ALDH5A1	CLPX	IMPDH1	PTPN6	PCCB	VWA1	NSUN3	PDSS2	GSTZ1	WARS2	FSTL1	PSMB1	MCCC1	LYRM7	PPIA	HARS2	TFB2M	DNAJC10	UGGT2	DYNLT1	APLP2	MRRF	PDIA6	ACTR1B	ATG7	CS	NUDT2	D2HGDH	STC2	GFM2	PSMC2	ALDH1L2	GSTK1	KPNB1	RPS3	TSPO	MXRA8	DNAJA3	PRLR	CDK1	POLG	B2M	DNAJC3	ACAD10	ACAT1	SMDT1	LIPT2	VCP	PDGFA	ARSK	TK1	MEN1	AP4M1	PRDX4	COLGALT1	NDUFAB1	COL6A1	FASTKD1	PDHX	ACSS1	COL18A1	CANX	HSP90AB1	SUOX	BOLA3	PCK2	ERP44	ATXN3	ALDH7A1	ANO8	POLRMT	DDX3X	SOD1	MECR	GSDMD	NDUFA9	VCPIP1	ACAA2	GPT2	CTSH	PNP	ALDOA	FURIN	AGL	OAT	JMJD8	TFB1M	CRISP3	ELAC2	LONP1	BLOC1S1	HSPE1	TIMP2	ACADVL	NUDT1	FPGS	ACSF2	PSMD14	PCCA	TRMT10C	METTL4	SUCLG2	PYCR2	GPI	SUMF1	PSMA5	TFAM	DHTKD1	F8	RAB33B	PNPLA2	CYFIP1	MTG2	KCMF1	SIRT5	SSBP1	NDUFS3	CDK13	ACSF3	PSMD12	TRMT61B	FOXRED2	TOR1B	GOT2	TIMP1	APAF1	ABCE1	PHYKPL	THEM4	CTSC	FASTKD5	ADAM17	PKM	GLS2	ERLEC1	MVP	ALDH1B1	IMPDH2	TRNT1	GLUD1	ALAS1	BDH1	AUH	PSMB7	GOLM1	PGAM1	GYG1	BCKDHB	VCL	SYNE2	PPIL2	ACSM3	DBNL	COQ5	TOR1A	CALR	PRIMPOL	CST3	IARS2	ACADM	PUS1	ETFB	MUC1	CSTB	TXNDC16	UQCC2	TXN2	BCAT2	SOD2	PAFAH1B2	LACTB2	SIRT3	TSPAN14	GOLIM4	MUC20	CAPN1	TEFM	EOGT	PRDX3	SHISA5	DGUOK	HYKK	SRP14	NDUFS7	TXNDC12	ACOT2	ACADS	GFM1	ACADSB	CNPY3	HSD17B10	INSR	FASTKD2	TOR2A	LIAS	PYCR1	GSN	PGM2	GLRX5	NDUFS2	PDHA1	NDUFB8	PRSS23	IDH2	C1QBP	HMGB1	MCCC2	ACLY	CCAR2	ERAP2	HSPA9	DBT	HSPG2	ECI1	CCNB1	SDC2	DNAJB11	MUC13	LYRM4	GADD45GIP1	PRKCSH	COASY	TRIT1	NFS1	PPA2	OGDH	ARSD	DERA	ARG2	HIBADH	AADAT	ARMC8	OXA1L	PDAP1	PSMC3	ERAP1	ME3	SPTAN1	COQ3	NDUFS1	HSPA1B	ECHS1	EGFR	QPCT	ACTR10	MMAB	OSTF1	FUCA2	FH	PDK3	GCSH	KTN1	PDE12	MINPP1	ALAD	CBR4	PSMD11	HSPA8	LTBP1	P4HB	FOXO3	MTRF1L	EEF1A1	SLC27A2	HSPA5	NT5M	AP4B1	SHH	TRMT5	NIT2	GSR	PDSS1	HSPH1	PSMA2	LGALS1	MIA3	YARS2	CLPP	IDH1	MMP14	P4HA2	ALDH2	ARPC5	ARSJ	PPM1K	ETFDH	FECH	TYMS	HSPA6	SDF4	LARS2	UGGT1	SUPV3L1	ESD	PPIE	ABHD10	CTSZ	COTL1	CAB39	MAPK1	FARS2	MBTPS1	SUMF2	TGOLN2	DLST	PFKL	PDHB	FDXR	MTHFD2	MMAA	COMMD9	FASTKD3	HSPD1	COL6A2	PGM1	QSOX1	MCAT	FDX1	COMMD3	HMGCL	ACSS3	LAMB1	PTCD1	PDP1	XRCC6	HUWE1	TSPAN15	BACE1	ETHE1	JUP	ACP6	DLAT	NARF	REXO2	NUDT9	PPTC7	CAT	SCO2	FAM20C	CTSD	ISCU	PDPR	CLN6	GCDH	NMNAT3	OS9	FMOD	PYGL	H6PD	SERPINI1	AGRN	AP4S1	SDC1	CAND1	HIBCH	IVD	RNASET2	PDIA3	P4HA1	ISCA1	HSPA1A	MUC15	PDK2	CRTAP	FAHD1	ACAD8	GOLGA7	MARS2	ARL2BP	HADHA	IDH3G	ALDH6A1	CALU	GUSB	MCEE	NDUFS8	HSD17B8	GLS	TBRG4	FN1	GRPEL1	FKBP14	HSP90AA1	SUCLA2	OGG1	PSMD6	MAPK14	NUCB1	ILF2	LAMB2	GGH	MGAT4A	APP	PDIA5	SDC4	LAMC1	CFD	AP4E1	ARL2	NUDT13	TMEM132A	TSFM	TXNRD2	MAPK3	MPST	PSMD13	APEH	NSUN4	RARS2	POLG2	DLD	SERPINH1	CANT1	WFS1	IDH3A	PSMD3	CNN2	CTSL	FTH1	TSPAN33	NUBPL	PRDX5	GLB1	GANAB	EEF2	MANF	FASTK	SUCLG1	METTL15	ALDOC	DAG1	MTHFD1L	THBS1	GPX1	ACSS2	METTL17	PPIB	PDK1	HMGCS2	RCAN1	TGFB1	TOR3A	ACOT9	BCKDK	IGFBP3	HSP90B1	NADK2	LRG1	COL9A3	ERP29	YPEL5	TXNDC5	CKAP4	PODXL2	CCT8	AK4	CCNA2	TIMM44
+Kinetochore Microtubule (GO:0005828)		CHMP1B	CHMP1A	KNTC1	CHMP6	CHMP7	CENPE	CHMP2A	KIF18A	CHMP3	ZWILCH	CHMP4C	CHMP5	RAB11A	ZW10	CHMP2B	CLASP2
+Large Ribosomal Subunit (GO:0015934)		RPL31	RPLP2	RPL29	RPL10A	RPL39	RPL14	RPL37	RPL5	RPL15	RPL18A	RPL3	RPL35	RPL6	RPL26L1	RPL32	UBA52	RPL18	RPL34	RPL26	RPL36	RPLP0	RPL22	RPL11	RPL9	RPL24	RPL41	RPL21	RPL30	RPL37A	RPL8	RPL7A	RPL12	RPLP1	RPL7L1	RPL38	RPL39L	RPL4	RPL13	RPL35A	RPL13A	RPL19	RPL36AL	RPL7	RPL28	RPL27A	RPL27	RPL23A
+Late Endosome (GO:0005770)		VAC14	LDLR	VAMP5	CD63	VPS11	VTI1A	TMEM30A	SNF8	HTT	VPS13C	CLCN3	CHMP7	VPS33A	SNX16	KIDINS220	VPS39	TPT1	ANXA6	PXK	VPS41	RAB9A	CHMP4C	SNX14	RNF128	ANXA2	CHMP6	EXOC8	SLC31A2	LAPTM4A	CHMP5	SRC	PIKFYVE	VTI1B	VIPAS39	ATP7A	ZFYVE26	RAB14	VPS8	LAPTM4B	LAMTOR5	PIK3C3	VPS33B	AP5Z1	GRN	TMEM192	TMEM9	OSBPL1A	LAMTOR1	FYCO1	SPPL2A	PIK3R4	HDAC6	RAP1A	LAMP2	ABCA5	SLC11A2	SLC30A4	LAMP1	VTA1	STX8	MAPK3	CHID1	RAB7A	WDR91	ATP13A2	STARD3NL	GOSR2	ANKRD13B	AP5M1	RAB27B	RAB27A	VAMP8	SDF4	SCARB2	CHMP1B	CTSL	TMEM230	VPS18	TMEM59	SORL1	VPS35	CHMP3	RAB11A	IGF2R	STX7	TMEM25	CYB561A3	MFSD12	CHMP2A	LAMTOR3	MAPK1	LAMTOR4	ATG9A	VPS26B	MCOLN1	MAP2K2	RNF13	SFTPA2	SLC11A1	SLC39A14	NBR1	UBXN6	VPS36	STARD3	PSAP	VPS4A	ATP13A3	BAIAP3	MYO5A	ANKRD13A	PLD3	UVRAG	CTNS	RNF149	LAMTOR2	ANKRD27	RILP	TSG101	AP5B1	CLN3	VPS16	CHMP1A	WDR81	BACE1	LGMN	MAP2K1	CHMP2B	IFITM2
+Late Endosome Membrane (GO:0031902)		VAC14	CD63	VTI1A	TMEM30A	SNF8	CHMP7	VPS39	PMEL	ANXA6	VPS41	CHMP4C	ANXA2	CHMP6	SLC31A2	LAPTM4A	CHMP5	PIKFYVE	VTI1B	LAPTM4B	LAMTOR5	TMEM9	LAMTOR1	LAMP2	SLC11A2	RAB7A	WDR91	ATP13A2	STARD3NL	GOSR2	RAB27B	RAB27A	VAMP8	SCARB2	CHMP1B	CHMP3	CYB561A3	CHMP2A	LAMTOR3	LAMTOR4	CDIP1	RNF13	SLC11A1	SLC39A14	UBXN6	LITAF	VPS36	STARD3	ATP13A3	BAIAP3	PLD3	LAMTOR2	CHMP1A	WDR81	CHMP2B	IFITM2
+Lipid Droplet (GO:0005811)		HILPDA	VPS13C	ALDH3B2	BCAP31	ANXA2	AUP1	PNPLA4	RAB40C	RAP1B	UBE2G2	HSD3B7	NSDHL	AIFM2	TSC1	ARID4A	FAAH2	PLA2G4C	IRAK1	RAB18	EHD1	RDH10	CTDNEP1	BSCL2	ZW10	LSS	ALOX15	VCP	RAB7A	ACSL3	ACSL4	RAB3GAP1	PLIN3	VPS13A	HSD17B11	CIDEB	DGAT2	SCCPDH	OSBPL2	DHRS3	GAPDH	RAB5C	LPCAT1	ZFYVE1	CYB5R3	PLIN2	RNF213	FAF2	SET	CKAP4	PNPLA2
+Lysosomal Lumen (GO:0043202)		CTSB	TPP1	CTSD	GNS	IDUA	FMOD	AGRN	SDC1	NPC2	ASAH1	GUSB	CTSA	HSPA8	GALC	GYG1	HEXB	HSP90AA1	IDS	NAGLU	MAN2B1	LAMP2	CTSF	SDC4	IFI30	GLA	CHID1	GM2A	ATP13A2	HEXA	SCARB2	CTSL	GAA	GLB1	PPT1	PPT2	NAAA	SMPD1	NEU1	PSAP	SGSH	PLD3	FUCA1	HSPG2	SDC2	TXNDC5	LGMN
+Lysosomal Membrane (GO:0005765)		ARRB1	CD63	CLN5	VPS11	VPS33A	CP	RRAGB	ABCB9	MYO6	KXD1	ANKFY1	GPR137	LYN	ANXA6	SPNS1	CHMP4C	CHMP6	TOM1	AP3M1	SNAPIN	GPR137C	ARL8A	ATP6V1C1	TMEM9	ATP6V0D1	SLC11A2	MTOR	SURF4	CLTA	RAB7A	STARD3NL	TMEM63A	COL6A1	ATP6V0A1	GNAI1	TPCN1	GOPC	RAB3D	MFSD8	NSF	BLOC1S1	OCLN	CPNE1	SPAG9	DAGLB	GLIPR1	RNF167	RILP	AP5B1	PLEKHF1	ATP6V1E1	IFITM3	CLU	CHMP7	BRI3	SLC39A8	ABCA2	PRCP	AP1S2	SLC31A2	TMEM179B	GNAI3	SLC44A2	ZFYVE26	PHIP	LNPEP	SEH1L	LAPTM4B	FNIP1	CD68	P2RX4	ARL8B	TMEM106B	ABCB6	AP2S1	HPS4	AP2B1	ABCD4	TMEM79	TRIM23	ABCA5	AP1S1	TMEM175	LAMP1	BLOC1S2	VAMP8	GNA11	NCSTN	SLC26A11	HGSNAT	RPTOR	WDR59	TMEM165	ATRAID	PIGR	MCOLN1	ATP6AP2	LITAF	PSAP	RRAGA	DNAJC5	RAB5C	AP3B1	SNAP29	SLC35F6	ATP6V1G1	GNB2	SZT2	AP3D1	FLCN	PI4K2A	TMEM30A	CLCN3	SLC48A1	VPS39	ATP11B	DDOST	SEC13	VPS41	UBA1	STX17	LAPTM4A	ECE1	MIOS	ATG16L1	VTI1B	AP1B1	EGF	TECPR1	B4GALT1	ATP8A1	PSEN1	HSPA8	LAMTOR5	GNAQ	RAB2A	GRN	GNB1	TFEB	TMEM192	EEF1A1	SPHK2	LAMTOR1	SLC15A4	HPS6	WDR24	LAMP2	SLC2A8	NDUFC2	CHMP1B	ATP6V0E1	VPS35	GAA	VAPA	RDH14	CHMP2A	LAMTOR4	UBXN6	PLEKHM2	NPRL3	STARD3	SYNGR1	NPRL2	AP2A2	LAMTOR2	LPCAT1	AP2A1	VPS16	DAB2	TMBIM1	ATP6V1B2	SLC37A3	ATP6V1H	IFITM2	MGST1	FLOT1	LDLR	CTSD	AP1M2	ATP6V1A	ATP6V1C2	TCIRG1	SCARB1	ANXA2	NAPG	SIDT2	CHMP5	RAP1B	AP2M1	SPG11	RAB14	ATP6V0B	CTSA	AP1G1	LRRC8E	CPNE3	SPPL2A	WDR41	MCOLN2	ATP13A2	MAGT1	UBA52	DNAJC13	SCARB2	VPS18	VPS13A	CHMP3	ABCD1	STX7	CYB561A3	MFSD12	CLCN7	LMBRD1	LAMTOR3	CDIP1	ATP6V1D	RNF13	SLC39A14	AHNAK	ATP6V0A2	CLTC	CMTM6	DEPDC5	PSEN2	ATP6V0E2	CTNS	CLCN6	CYB561	CLN3	AP1M1	CHMP1A	WDR81	CKAP4	SLC17A5	EEF1A2	LRRC8A	CHMP2B
+Lysosome (GO:0005764)		ARRB1	CTSB	CD63	CLN5	VPS11	RB1CC1	RNF19B	VPS33A	GNS	CP	RRAGB	ABCB9	MYO6	ANKFY1	GPR137	LYN	ANXA6	SPNS1	NPC2	SNX14	CHMP4C	ASAH1	CHMP6	VMA21	STXBP2	AP3M1	GNPTG	GPR137C	GALC	ARL8A	ATP6V1C1	TMEM9	FYCO1	ATP6V0D1	MAN2B1	SLC11A2	MTOR	CHID1	GM2A	RAB7A	ARSK	STARD3NL	TMEM63A	HEXA	COL6A1	ATP6V0A1	GNAI1	ITM2C	RAB12	CD164	PCYOX1	TMEM25	TPCN1	GOPC	SNX6	SYT7	PPT1	CTSH	MFSD8	NEU1	NSF	BLOC1S1	OCLN	SPAG9	DAGLB	RNF167	FUCA1	DRAM1	RILP	AP5B1	PLEKHF1	ATP6V1E1	IFITM3	SORT1	CLU	VPS13C	CHMP7	EPDR1	SLC39A8	ACP2	AP1S2	PRKCD	CTSC	SLC31A2	HPS1	SRC	GNAI3	SLC44A2	ZFYVE26	PHIP	LNPEP	SEH1L	LAPTM4B	DRAM2	CPQ	FNIP1	CD68	DTX3L	GYG1	P2RX4	ARL8B	TMEM106B	ABCB6	HPS4	RFFL	ABCD4	TMEM79	TRIM23	ABCA5	AP1S1	TMEM175	LAMP1	IFI30	GLA	SLC2A13	VAMP8	GNA11	NCSTN	SLC26A11	HGSNAT	RPTOR	WDR59	PPT2	TMEM165	ATRAID	NAAA	SMPD1	MCOLN1	ATP6AP2	LITAF	BCL10	PSAP	RRAGA	MYO5A	DNAJC5	EPG5	RAB5C	AP3B1	ANKRD27	HSPG2	SDC2	LGMN	SLC35F6	ATP6V1G1	GNB2	SZT2	AP3D1	FLCN	PI4K2A	CLCN3	SLC48A1	VPS39	IDUA	SEC13	VPS41	UBA1	STX17	FUCA2	LAPTM4A	ECE1	MIOS	VTI1B	AP1B1	EGF	TECPR1	PSEN1	HSPA8	OCIAD2	LAMTOR5	GNAQ	RAB2A	GRN	GNB1	TFEB	TMEM192	IDS	SPHK2	LAMTOR1	SLC15A4	HPS6	WDR24	LAMP2	SLC2A8	SNX1	CHMP1B	OCIAD1	ATP6V0E1	VPS35	CTSZ	GAA	SNX2	RDH14	CHMP2A	LAMTOR4	UBXN6	USE1	PLEKHM2	NPRL3	STARD3	USP5	NPRL2	TOM1L1	LAMTOR2	UNC93B1	VPS16	DAB2	TMBIM1	BACE1	ATP6V1B2	SLC37A3	ATP6V1H	IFITM2	FLOT1	LDLR	TPP1	CTSD	AP1M2	ATP6V1A	ACE	KLHL22	RPS6KC1	FMOD	ATP6V1C2	AGRN	SDC1	TCIRG1	RNASET2	GGA3	RAB9A	PRSS16	SCARB1	ANXA2	NAPG	VPS26A	SIDT2	CHMP5	AP2M1	SPG11	HGS	USP4	RAB14	ATP6V0B	GUSB	CTSA	AP1G1	VPS33B	HEXB	HSP90AA1	LRRC8E	NAGLU	SPPL2A	CTSF	SDC4	HYAL2	WDR45B	WDR41	TMEM97	AGA	MCOLN2	ATP13A2	UBA52	AP5M1	RRAGC	RAB27A	MFSD1	RRAGD	DNAJC13	SCARB2	VPS18	CTSL	TMEM59	VPS13A	CHMP3	TIAL1	ABCD1	GLB1	STX7	CYB561A3	MFSD12	CLCN7	LMBRD1	LAMTOR3	ATP6V1D	RNF13	SLC11A1	SLC39A14	AHNAK	ATP6V0A2	CLTC	SGSH	VPS4A	DEPDC5	PSEN2	PLD3	UVRAG	ATP6V0E2	CTNS	CLCN6	CYB561	CLN3	AP1M1	CHMP1A	WDR81	TXNDC5	SLC17A5	TSC2	LRRC8A	VAMP4	CHMP2B
+Lytic Vacuole (GO:0000323)		CTSB	FLCN	LDLR	SORT1	CLN5	TPP1	VPS11	CTSD	CLU	RB1CC1	VPS13C	VPS33A	ACE	EPDR1	KLHL22	RRAGB	ABCB9	RPS6KC1	VPS41	RNASET2	NPC2	GGA3	RAB9A	SNX14	ACP2	PRSS16	ASAH1	SCARB1	CTSC	VMA21	FUCA2	CHMP2B	VPS26A	SIDT2	HPS1	SRC	AP3M1	ZFYVE26	HGS	USP4	RAB14	LAPTM4B	CTSA	DRAM2	HSPA8	OCIAD2	CPQ	LAMTOR5	GALC	CD68	DTX3L	VPS33B	GRN	ARL8B	TMEM192	TMEM106B	IDS	HPS4	RFFL	TMEM9	LAMTOR1	FYCO1	NAGLU	MAN2B1	LAMP2	ABCA5	CTSF	MTOR	TMEM175	HYAL2	LAMP1	IFI30	GLA	WDR45B	CHID1	TMEM97	AGA	ARSK	RAB7A	SLC2A13	ATP13A2	AP5M1	RRAGC	RAB27A	MFSD1	RRAGD	SNX1	ITM2C	RAB12	VPS18	CTSL	OCIAD1	CD164	PCYOX1	TMEM59	VPS35	RPTOR	TIAL1	CTSZ	GAA	STX7	TMEM25	TPCN1	MFSD12	SNX2	SNX6	SYT7	LAMTOR4	PPT1	NAAA	PPT2	SMPD1	MCOLN1	CTSH	SLC11A1	USE1	ATP6AP2	CLTC	BCL10	NEU1	USP5	PSAP	RRAGA	SGSH	DEPDC5	VPS4A	MYO5A	EPG5	UVRAG	RNF167	CTNS	TOM1L1	FUCA1	UNC93B1	ANKRD27	DRAM1	RILP	PLEKHF1	VPS16	CLN3	BACE1	LGMN	TSC2	VAMP4
+Lytic Vacuole Membrane (GO:0098852)		SZT2	ARRB1	FLOT1	AP3D1	FLCN	CD63	CLN5	PI4K2A	VPS11	CTSD	CLU	AP1M2	ATP6V1A	CLCN3	CHMP7	VPS33A	SLC48A1	CP	VPS39	RRAGB	ABCB9	MYO6	SLC39A8	ANKFY1	GPR137	LYN	ATP6V1C2	SEC13	ANXA6	VPS41	SPNS1	UBA1	TCIRG1	STX17	CHMP4C	SCARB1	ANXA2	CHMP6	AP1S2	NAPG	SLC31A2	LAPTM4A	SIDT2	CHMP5	ECE1	MIOS	AP2M1	GNAI3	AP3M1	VTI1B	AP1B1	SLC44A2	EGF	ZFYVE26	TECPR1	GPR137C	PHIP	SPG11	LNPEP	SEH1L	ATP6V0B	RAB14	LAPTM4B	PSEN1	HSPA8	LAMTOR5	AP1G1	FNIP1	ARL8A	GNAQ	RAB2A	GRN	P2RX4	ARL8B	GNB1	TFEB	ATP6V1C1	TMEM106B	ABCB6	TMEM192	HPS4	LRRC8E	SPHK2	TMEM9	ABCD4	LAMTOR1	SLC15A4	HPS6	SPPL2A	WDR24	TMEM79	TRIM23	ATP6V0D1	LAMP2	ABCA5	SLC11A2	SLC2A8	MTOR	AP1S1	TMEM175	LAMP1	WDR41	RAB7A	MCOLN2	ATP13A2	STARD3NL	TMEM63A	UBA52	VAMP8	COL6A1	ATP6V0A1	DNAJC13	GNAI1	GNA11	SCARB2	CHMP1B	NCSTN	ATP6V0E1	VPS18	SLC26A11	VPS13A	HGSNAT	VPS35	CHMP3	RPTOR	GAA	ABCD1	STX7	TPCN1	GOPC	CYB561A3	WDR59	MFSD12	CLCN7	LMBRD1	CHMP2A	LAMTOR3	RDH14	LAMTOR4	ATRAID	TMEM165	ATP6V1D	MCOLN1	RNF13	SLC39A14	UBXN6	AHNAK	PLEKHM2	ATP6AP2	ATP6V0A2	LITAF	MFSD8	NPRL3	NSF	STARD3	PSAP	BLOC1S1	OCLN	DEPDC5	PSEN2	RRAGA	SPAG9	DNAJC5	DAGLB	NPRL2	RNF167	ATP6V0E2	CTNS	SLC37A3	LAMTOR2	RAB5C	CLCN6	CYB561	AP3B1	RILP	AP5B1	PLEKHF1	CLN3	VPS16	AP1M1	ATP6V1E1	CHMP1A	DAB2	TMBIM1	WDR81	SLC17A5	ATP6V1B2	IFITM3	SLC35F6	ATP6V1G1	LRRC8A	ATP6V1H	CHMP2B	GNB2	IFITM2
+Melanosome (GO:0042470)		SGSM2	ATP7A	MYO5A	RAB27B	BACE2	RAB27A	PMEL	CTNS	HPS4	SYTL2	RAB17	RAB32	RAB9A	SYTL1	TMEM33	MFSD12	GCHFR
+Membrane Raft (GO:0045121)		FLOT1	TPP1	PI4K2A	CTSD	CLN6	CBLC	CAPN2	CBLB	STIM1	PRKAR1A	LYN	MYADM	ATP1A1	EGFR	CXADR	ANXA2	EMP2	ADAM17	SRC	PIKFYVE	RAP1B	IL6ST	PROM2	PRKAR2A	PSEN1	ERLIN2	PLSCR1	MAL2	LAMTOR1	SHH	APP	ERLIN1	CHRNA3	TNFRSF1A	GJA1	HYAL2	CBL	ORC3	MME	PRKACA	S100A10	STOML2	MFAP3	PAG1	SERPINH1	STX12	MYO1C	NOL3	DLL1	ORAI1	PPP2CA	ITGB1	LDHB	PPT1	CD55	RAP2B	FURIN	AHNAK	FAS	EZR	SDCBP	DYNLL1	PSEN2	TGFBR1	CLN3	PRNP	PGK1	PPP2R1B
+Microbody Lumen (GO:0031907)		ACOX3	IDH1	PAOX	EPHX2	CAT	CROT	ACAA1	PHYH	ECH1	AMACR	GNPAT	CRAT	ACOX1	HACL1	HMGCL	TYSND1	NUDT19	AGPS	IDE	ACOT2	PEX5	HSD17B4	GSTK1	ATM	SCP2	PEX7	NUDT12	LONP2	DHRS4	ACOT8	ECI2	GRHPR
+Microbody Membrane (GO:0031903)		MAVS	MGST1	MAP2K2	PEX13	PEX26	IMPDH2	CAT	NBR1	PEX2	FIS1	FAR1	PEX11A	HMGCR	PEX1	TTC1	PEX19	DHRS7B	GDAP1	GNPAT	ATAD1	PECR	PEX10	PEX11B	PEX14	TRIM37	ALDH3A2	SLC27A2	AGPS	ABCD4	PEX5	HSD17B4	PEX12	SLC25A17	DECR2	MPV17	RAB8B	PEX16	ABCD3	ACBD5	PEX3	PEX7	FAR2	DHRS4	PEX11G	PEX6	PNPLA8	USP30
+Microtubule (GO:0005874)		RMDN3	KIF14	SKA1	MTA1	KIF5C	KIF20A	CDK5	KIF4A	CCT3	TUBB6	MAP3K11	FAM161A	KIF1B	SIRT2	KIF3A	DCTN1	SYNJ1	PARP4	NUMA1	KIF21A	CCDC66	DNM1L	CALM1	TUBE1	AURKB	POLB	DYNC1H1	TCP11L1	DPP9	FHDC1	APC	TUBA4A	CCT5	KIF12	KCNAB2	TUBA1B	KIF20B	KIF15	AURKA	KIFC1	CALM2	KIF5B	TUBB3	MX2	PRC1	SARM1	BOD1	KIF11	CENPE	KATNB1	TTL	DYNC1I2	MAP4	EFHC2	HDAC6	EML1	KIF22	CALM3	CDK1	FGF13	CSNK1D	KIF16B	TUBD1	CAMSAP1	GAS8	CLIP1	KIF1A	CCT6A	PSRC1	MX1	CCT4	CEP57	KIFC2	TUBA1C	CCT7	RMDN1	TUBG1	TBCD	MACF1	EML3	ARL3	HAUS8	KIF1C	TUBA1A	NDRG1	CCDC57	KIF3B	IQGAP1	SKA2	CDK2AP2	KIF2C	PYCARD	TCP1	SYBU	MAP2K2	CDK5RAP3	KIF7	PLK1	KIF3C	MID1	CDK5RAP2	KIFAP3	LRPPRC	TUBB4B	KATNAL2	KIF13A	CLASP2	MAP6D1	BAG2	CCT2	MAP1S	TBCC	TBCE	DLG1	MAPRE1	TUBG2	OPA1	ARHGEF2	CCT8	DPYSL2	TRIM54	DNM2	KIF23	SKA3
+Microtubule Cytoskeleton (GO:0015630)		CDC20	KIF14	SHMT2	ENKD1	CCNB2	ANAPC5	OVGP1	KIF1B	DCTN1	ACTR1A	SYNJ1	CCDC66	DNM1L	MTUS1	TUBE1	MAP7D2	DPP9	FHDC1	ANAPC7	APC	KCNAB2	KATNA1	MZT1	KIF20B	KIFC1	CDCA8	CENPV	KIF5B	DCUN1D5	MX2	ACTR1B	KIF11	KATNB1	TMEM9	MAP4	PIK3R4	HDAC6	FES	EML1	KATNBL1	KIF1A	CCT4	ESRRA	TUBGCP3	BUB1B	TBCA	IQGAP1	AKT1	PYCARD	MAP7	CDK5RAP3	KIF3C	SPICE1	TUBB4B	KIF13A	MAD2L2	CCT2	MAP1S	MAPRE1	TUBG2	OPA1	ARHGEF2	ZNF397	KIF23	TPX2	CCT3	TUBB6	JTB	FAM161B	NUMA1	NEDD9	IFT43	SPATA7	MZT2B	CDC27	KIF12	PCIF1	KIF18A	PHIP	PRC1	DNAJA1	CDH26	KIF16B	CAMSAP1	CKAP2L	PSRC1	MX1	PPP2R1A	GTSE1	CBX1	MAST2	CDK2AP2	KIF2C	OFD1	HMMR	TCP1	CHP1	FBXO5	MID1	KIFAP3	MID1IP1	TBCB	KATNAL2	GAPDH	NUDCD2	CCAR2	RGS14	DBT	TBCC	DLG1	CHAMP1	DPYSL2	TRIM54	NUDC	KIF3A	TAOK1	SKA1	CDC42EP4	MTA1	CENPF	SPTAN1	MMS19	KIF21A	RBM39	TCP11L1	RUSC1	TUBA1B	BIRC5	FAM83D	ERCC2	TUBB3	SARM1	INCENP	DYNC1I2	CSNK1A1	LYST	FGF13	KLF4	CLIC4	SPATA5	CEP57	TUBA1C	CYLD	NAV1	SAC3D1	TUBG1	TBCD	EML3	ARL3	CTDP1	NDRG1	RACGAP1	SPATA5L1	KIF3B	PPP2CA	SYBU	ATXN7	MAP2K2	NISCH	LRPPRC	BAG2	MZT2A	CCSER2	TUBGCP4	DNM2	KIF5C	KIF20A	ANXA11	KLHL22	CDK5	SOX9	CKAP2	MAP3K11	PRKCI	SIRT2	MAP7D1	TTK	AGBL5	AURKB	POLB	DYNC1H1	CBX3	CKAP5	TUBA4A	CCT5	KIF15	AURKA	MARK1	MAEA	NINL	GTF2F2	CENPE	IQCB1	EFHC2	KIF22	CSNK1D	TUBD1	ARL2	GAS8	CLIP1	CCT6A	SLAIN2	KIFC2	CCT7	MACF1	KIF1C	TUBA1A	THAP6	CSPP1	DST	KIF7	CLTC	PLK1	DTNBP1	CDK5RAP2	CDK16	CLASP2	MAP6D1	SPAST	TBCE	CCSAP	RASSF1	CCT8
+Microvillus (GO:0005902)		HYAL2	MYO1B	SLC9A3R1	MYO1D	STARD10	CD44	VIL1	EZR	PDGFA	TGFB1	CLIC4	PROM2	RDX	PODXL	SLC6A6	MYO1E	MYO1C	ESPN	MYO1F	SLC27A4	ITGAV	SYTL1	SLC7A8	SLC7A5
+Mitochondrial Envelope (GO:0005740)		PNPT1	SIRT5	GPER1	NDUFS3	OGDH	TIMM10B	COX17	TIMM9	TMBIM6	CPOX	COA6	OXA1L	NLN	NDUFS1	CHCHD4	MICU1	SLC25A28	ABCB8	SLC22A3	BNIP1	FBXL4	SLC30A9	TIMM13	MAVS	CHCHD10	BOK	PINK1	NME4	ARL2BP	TMEM14A	LYRM7	TIMM8A	SDHD	AK2	CHCHD5	NDUFB7	ABCB6	PLA2G4C	NDUFA2	RNF144B	ACADM	CLPB	MFF	TMEM70	PANK2	AIFM1	COA4	ARL2	SLC25A20	STOML2	ETFDH	GNPAT	NDUFA8	SLC25A33	NDUFAB1	NDUFB6	SLC39A9	SDHB	HTRA2	VPS13A	VRK2	NGRN	COX19	CYCS	ABCD1	HAX1	THOP1	NDUFA13	ATXN3	CHCHD2	GPAM	TMEM14B	BNIP3	PRELID1	NDUFA1	MICU2	SOD1	NDUFAF4	NDUFA9	NDUFA6	OMA1	HADHB	FKBP8	SLC25A4	GPAT2	IFI27L2	ACAD11	VDAC1	BLOC1S1	ACADVL	VDAC2	TIMM8B	TRIAP1	TIMM10	CYB5R3	IFI6	CMC4	OPA1	AGK	DIABLO	TIMM23	SLC25A27	REXO2	SLC25A37	ACAD9	UQCC2	TMEM14C
+Mitochondrial Inner Membrane (GO:0005743)		SLC25A11	NDUFV1	MRPS16	SHMT2	BCS1L	UQCC1	MRPS21	RDH13	MRPL13	MRPL47	COX6A1	MRPS17	MRPS11	MRPL39	CLPX	NDUFV2	TIMM13	COX5A	COA3	MPV17L2	PARL	NDUFA5	DNAJC30	MRPS34	MRPS5	MRPL46	NDUFB3	HIGD1A	COX20	MRPS18B	COQ6	RPS3	LETM1	MRPL12	TMEM70	IMMP2L	MRPS18C	MPC2	PMPCA	TIMM22	COX8A	SMDT1	SLC25A16	SLC25A20	MRPS27	ECSIT	NDUFA8	NDUFAB1	SLC25A12	COX7A2L	MRPL38	COX6C	CYCS	COX10	MRPS36	NDUFA1	MRPS33	MICU2	PMPCB	MCUR1	COX5B	DHODH	UQCRC2	MRPL41	MRPL49	MRPL2	COX6B1	UQCR11	NDUFB9	NDUFB5	MRPL17	MRPL4	OPA1	SLC25A3	TMEM223	COX4I1	ENDOG	MTG2	TMEM11	ALDH18A1	MRPS12	MRPL44	MRPL40	NDUFS3	TIMM10B	CLU	TIMM17A	SLC25A22	PHB2	FOXRED1	COX18	SRC	UQCR10	MRPL43	MRPL55	BDH1	MRPS23	SDHD	NDUFAF1	MCU	AURKAIP1	MRPS25	NDUFB7	COQ5	SLC25A1	NDUFA2	COA1	MPC1	SLC25A38	UQCC2	CHCHD1	GPD2	NDUFC1	NDUFAF3	NDUFA12	SFXN1	NDUFB11	MRPL52	MRPL16	MRPS9	NDUFB6	IMMT	MRPL18	MRPL19	UQCRC1	COX16	SPG7	TMEM126B	MPV17	MRPL28	LDHB	PTCD3	NDUFA6	TIMM50	SDHA	ACAD11	MRPS22	NDUFA10	NDUFB8	UQCRFS1	CKMT2	MRS2	SDSL	TIMM10	MRPL14	IFI6	CYC1	MRPL22	SLC25A5	COQ4	MRPL3	ACAD9	GADD45GIP1	SLC25A21	YME1L1	PGS1	SLC25A15	TIMM9	NDUFV3	COQ3	NNT	SLC25A19	MRPS6	TMEM186	MRPL54	FLVCR1	NDUFAF2	BOK	SLC25A32	NDUFB1	PSEN1	MRPL11	L2HGDH	NDUFA11	MRPS31	NDUFA4	TTC19	AIFM3	UQCRB	MRPL23	UQCRH	NDUFS4	UCP2	PGAM5	MRPL21	APOO	CCDC51	NDUFC2	ETFDH	FECH	TYMS	MRPL53	TMEM242	COQ7	SLC41A3	NDUFAF4	UQCRQ	GCAT	MRPS14	NDUFB4	SLC25A4	MRPL9	HSPD1	MRPL50	COX7C	CHCHD6	MRPL51	MRPS30	MRPS15	MRPL35	AFG3L2	NDUFS5	CRLS1	SDHC	TIMM17B	SLC25A29	TIMM23	TMEM160	NDUFS6	SCO2	CKMT1A	CHDH	MRPS28	MRPL48	SLC25A26	MRPS10	NDUFA7	MICU1	NDUFAF5	MRPS26	PINK1	NME4	TOMM40	DAP3	HADHA	IMMP1L	SMIM20	GHITM	MRPS7	CHCHD3	MRPS2	CPT2	MRPL42	SCO1	TIMMDC1	TMEM65	NDUFAF6	MRPL37	AIFM1	MRPS18A	MRPL45	NDUFB2	COX7B	STOML2	MRPL27	SLC25A10	MRPL10	SDHB	COQ9	ATAD3A	COX15	MRPL33	DNAJC19	NDUFA13	NOA1	MRPL34	OMA1	HADHB	NDUFA3	CDS2	MRPL20	MRPL24	PSEN2	MRPL1	NDUFB10	COX11	SLC25A13	MRPL36	AGK	SLC25A27	COQ2	TIMM44
+Mitochondrial Intermembrane Space (GO:0005758)		PNPT1	SIRT5	CHCHD10	COA4	ARL2	PINK1	NME4	ARL2BP	TIMM10B	COX17	TIMM9	BLOC1S1	STOML2	TIMM13	CPOX	TIMM8A	COA6	NDUFA8	NLN	AK2	TIMM8B	NDUFS1	CHCHD5	HTRA2	NDUFB7	TRIAP1	TIMM10	CHCHD4	COX19	CYCS	MICU1	HAX1	THOP1	CHCHD2	CLPB	PRELID1	CMC4	OPA1	DIABLO	TIMM23	MICU2	PANK2	REXO2	SOD1	AIFM1	FBXL4	UQCC2
+Mitochondrial Matrix (GO:0005759)		POLDIP2	MDH2	OXCT1	SHMT2	ETFA	DECR1	ME2	ALKBH7	ERAL1	IBA57	ISCA2	MRPL13	ACO2	ALDH4A1	DARS2	IDH3B	TST	PITRM1	MRPL39	ALDH5A1	CLPX	PCCB	NSUN3	PDSS2	GSTZ1	WARS2	MCCC1	LYRM7	HARS2	TFB2M	MRRF	CS	NUDT2	D2HGDH	GFM2	RPS3	ALDH1L2	GSTK1	DNAJA3	CDK1	POLG	ACAD10	ACAT1	SMDT1	LIPT2	TK1	NDUFAB1	FASTKD1	PDHX	ACSS1	SUOX	BOLA3	PCK2	ATXN3	ALDH7A1	POLRMT	SOD1	NDUFA9	MECR	ACAA2	GPT2	OAT	MRPL49	TFB1M	ELAC2	LONP1	BLOC1S1	HSPE1	ACADVL	NUDT1	FPGS	ACSF2	PCCA	TRMT10C	METTL4	SUCLG2	PYCR2	TFAM	DHTKD1	MTG2	SIRT5	SSBP1	MRPS12	MRPL40	NDUFS3	ACSF3	TRMT61B	GOT2	ABCE1	PHYKPL	THEM4	FASTKD5	GLS2	MRPL43	ALDH1B1	TRNT1	GLUD1	ALAS1	BDH1	AUH	BCKDHB	ACSM3	COQ5	PRIMPOL	IARS2	ACADM	PUS1	ETFB	UQCC2	TXN2	BCAT2	SOD2	LACTB2	SIRT3	TEFM	PRDX3	DGUOK	HYKK	NDUFS7	MRPL18	ACOT2	ACADS	GFM1	ACADSB	MRPL28	HSD17B10	FASTKD2	DNAJC15	LIAS	PYCR1	MRPS22	GLRX5	NDUFS2	PDHA1	NDUFB8	IDH2	C1QBP	MCCC2	CCAR2	HSPA9	DBT	MRPL14	ECI1	CCNB1	LYRM4	GADD45GIP1	COASY	TRIT1	NFS1	PPA2	OGDH	ARG2	HIBADH	OXA1L	ME3	COQ3	NDUFS1	ECHS1	MMAB	FH	PDK3	GCSH	PDE12	CBR4	MRPL11	FOXO3	MTRF1L	NT5M	TRMT5	GSR	PDSS1	YARS2	CLPP	ALDH2	PPM1K	ETFDH	FECH	TYMS	LARS2	SUPV3L1	ABHD10	FARS2	MRPS14	DLST	PDHB	FDXR	MTHFD2	MMAA	FASTKD3	MRPL9	HSPD1	MCAT	FDX1	MRPL51	MRPL35	HMGCL	ACSS3	PTCD1	PDP1	ETHE1	ACP6	DLAT	REXO2	NUDT9	PPTC7	SCO2	ISCU	PDPR	GCDH	NMNAT3	GRPEL2	MRPL48	HIBCH	IVD	NDUFA7	ISCA1	PDK2	FAHD1	ACAD8	MARS2	ARL2BP	HADHA	IDH3G	ALDH6A1	MCEE	NDUFS8	HSD17B8	GLS	TBRG4	GRPEL1	SUCLA2	OGG1	MRPL37	NUDT13	ARL2	TSFM	TXNRD2	MPST	NSUN4	RARS2	POLG2	DLD	IDH3A	NUBPL	PRDX5	DNAJC19	MRPL34	FASTK	SUCLG1	METTL15	MTHFD1L	GPX1	ACSS2	METTL17	PDK1	HMGCS2	MRPL20	ACOT9	BCKDK	NADK2	AK4	TIMM44
+Mitochondrial Membrane (GO:0031966)		RMDN3	SLC25A11	NDUFV1	VDAC3	MRPS16	SHMT2	SYNJ2BP	FIS1	BCS1L	PLD6	CYB5A	UQCC1	MRPS21	NLRX1	RDH13	SAMM50	MRPL13	ACSL1	DNM1L	MRPL47	MAOA	ABCB8	COX6A1	AMBRA1	MRPS17	MRPS11	MRPL39	CLPX	NDUFV2	TIMM13	COX5A	COA3	MIEF2	MPV17L2	PARL	NDUFA5	DNAJC30	MRPS34	MRPS5	MRPL46	LYRM7	NDUFB3	HIGD1A	AIFM2	COX20	PLA2G4C	MRPS18B	COQ6	RPS3	FAM210B	TSPO	LETM1	RHOD	MRPL12	TMEM70	IMMP2L	SFXN2	RAB11FIP5	RPS27A	MRPS18C	MPC2	PMPCA	TIMM22	COX8A	SMDT1	SLC25A16	SLC25A20	MRPS27	ECSIT	NDUFA8	NDUFAB1	SLC25A12	COX7A2L	SLC39A9	MRPL38	VRK2	COX6C	CYCS	MYO19	COX10	ATXN3	GPAM	MRPS36	ACACB	NDUFA1	MRPS33	MICU2	UBB	NDUFA9	PMPCB	BNIP3L	MCUR1	COX5B	DHODH	UQCRC2	MRPL41	MRPL49	CASP8	ACADVL	TUFM	MRPL2	RHOT1	VDAC2	EXD2	COX6B1	UQCR11	NDUFB9	NDUFB5	ABCB7	MRPL17	MRPL4	OPA1	SLC25A3	TMEM223	SLC25A37	COX4I1	ENDOG	MTG2	TMEM11	TMEM14C	ALDH18A1	GPER1	MRPS12	MRPL44	MRPL40	NDUFS3	TIMM10B	CLU	TIMM17A	VPS13C	MIEF1	CPT1A	SLC25A22	PHB2	FOXRED1	QTRT1	COX18	SRC	UQCR10	MRPL43	SLC30A9	MFN1	CISD1	SLC44A2	MRPL55	MRPS23	SDHD	NDUFAF1	MCU	TOMM5	AURKAIP1	MRPS25	NDUFB7	ABCB6	COQ5	SLC25A1	NDUFA2	COA1	MPC1	ACADM	SLC25A38	MFF	UQCC2	CHCHD1	GPD2	NDUFC1	NDUFAF3	NDUFA12	SFXN1	NDUFB11	MRPL52	MRPL16	ACSL3	GDAP1	MRPS9	BCL2L1	NDUFB6	IMMT	ULK1	FUNDC1	MRPL18	MRPL19	UQCRC1	COX16	SPG7	TMEM126B	MPV17	MRPL28	RAF1	LDHB	KRAS	PTCD3	MCL1	NDUFA6	TIMM50	SDHA	GPAT2	ACAD11	MRPS22	NDUFA10	GALK2	VDAC1	NDUFB8	UQCRFS1	CKMT2	LPIN1	MRS2	SDSL	TIMM10	MRPL14	CYB5R3	IFI6	CYC1	MRPL22	SLC25A5	COQ4	MRPL3	ACAD9	GADD45GIP1	SLC25A21	COASY	YME1L1	PGS1	OGDH	SLC25A15	TIMM9	TMBIM6	NDUFV3	OXA1L	COQ3	SLC44A1	NNT	MOAP1	SLC25A19	MRPS6	TMEM186	SLC22A3	BNIP1	MRPL54	FLVCR1	BCL2L11	NDUFAF2	BOK	TOMM7	SLC25A32	TMEM14A	BPHL	NDUFB1	PSEN1	MRPL11	MTX2	L2HGDH	NDUFA11	FOXO3	MRPS31	NDUFA4	TTC19	AIFM3	UQCRB	MRPL23	UQCRH	CISD2	NDUFS4	UCP2	BAD	PGAM5	MRPL21	APOO	CCDC51	NDUFC2	ETFDH	FECH	GNPAT	TYMS	ATF2	CPT1B	NGRN	MRPL53	HAX1	TMEM242	TMEM14B	BNIP3	COQ7	SLC41A3	NDUFAF4	UQCRQ	GCAT	MRPS14	NDUFB4	SLC25A4	MRPL9	HSPD1	MRPL50	COX7C	CHCHD6	ATAD1	MRPL51	MRPS30	MRPS15	MRPL35	TOMM34	AFG3L2	NDUFS5	RAB32	CRLS1	SDHC	TIMM17B	SLC25A29	TIMM23	MSTO1	TMEM160	NDUFS6	SCO2	CKMT1A	CHDH	BCL2L2	MRPS28	MRPL48	MTX1	SLC25A26	MRPS10	NDUFA7	MICU1	SLC25A28	BAK1	NDUFAF5	MAVS	MRPS26	PINK1	NME4	TOMM40	DAP3	HADHA	IMMP1L	BID	SMIM20	GHITM	MRPS7	MUL1	CHCHD3	MRPS2	CPT2	MRPL42	MTCH2	MFN2	AGPAT5	TOMM20	BAX	PGRMC1	RNF144B	SCO1	TIMMDC1	TMEM65	NDUFAF6	MRPL37	AIFM1	MRPS18A	MRPL45	NDUFB2	CYP27B1	SPIRE1	COX7B	STOML2	MRPL27	UBA52	ACSL4	HK2	SLC25A33	SLC25A10	MRPL10	SDHB	COQ9	ZNFX1	ATAD3A	VPS13A	COX15	MRPL33	ABCD1	DNAJC19	NDUFA13	HMOX1	SLC25A46	MRPL34	OMA1	HADHB	HINT2	NDUFA3	CDS2	BMF	IFI27L2	MRPL20	MRPL24	PSEN2	MRPL1	NDUFB10	COX11	TOMM22	RHOT2	SLC25A13	STARD7	MRPL36	CYB5B	AGK	SLC25A27	COQ2	TIMM44	USP30
+Mitochondrial Outer Membrane (GO:0005741)		RMDN3	VDAC3	SYNJ2BP	FIS1	VPS13C	BCL2L2	MIEF1	CPT1A	PLD6	CYB5A	NLRX1	SLC44A1	MTX1	SAMM50	MOAP1	PHB2	ACSL1	DNM1L	BAK1	MAOA	QTRT1	AMBRA1	BNIP1	USP30	BCL2L11	MAVS	MIEF2	BOK	MFN1	TOMM7	CISD1	PINK1	SLC44A2	TOMM40	BID	BPHL	MTX2	MUL1	AIFM2	MTCH2	FOXO3	MFN2	TOMM5	AGPAT5	TOMM20	BAX	PGRMC1	FAM210B	TSPO	CISD2	RHOD	MFF	SFXN2	RAB11FIP5	RPS27A	BAD	PGAM5	ACSL3	CYP27B1	SPIRE1	GDAP1	UBA52	ACSL4	BCL2L1	HK2	ULK1	ATF2	ZNFX1	VPS13A	CPT1B	FUNDC1	MYO19	HAX1	GPAM	BNIP3	ACACB	RAF1	BECN1	HMOX1	UBB	KRAS	BNIP3L	SLC25A46	MCL1	HADHB	HINT2	GPAT2	BMF	GALK2	VDAC1	CASP8	TUFM	ATAD1	RHOT1	VDAC2	LPIN1	EXD2	TOMM22	TOMM34	RHOT2	RAB32	CYB5R3	STARD7	CYB5B	OPA1	AGK	MSTO1	COASY
+Mitochondrial Outer Membrane Translocase Complex (GO:0005742)		TOMM7	TOMM40	MTX2	DNAJC11	TOMM20L	CHCHD6	CHCHD3	IMMT	TOMM5	TOMM22	HSPA9	TOMM20	MTX1	SAMM50	TOMM40L
+Mitochondrial Respiratory Chain Complex I (GO:0005747)		NDUFA12	NDUFB4	NDUFA3	NDUFA5	NDUFB11	NDUFV1	NDUFS3	NDUFB2	NDUFA10	NDUFS2	NDUFB1	NDUFB8	NDUFC2	NDUFS8	NDUFB3	NDUFV3	NDUFA11	NDUFA8	NDUFAB1	NDUFAF1	NDUFB6	NDUFB10	NDUFA4	NDUFS1	NDUFB7	NDUFS7	NDUFB9	NDUFS5	NDUFA2	NDUFA7	NDUFB5	NDUFA13	NDUFS4	NDUFA1	NDUFA9	NDUFC1	NDUFV2	NDUFA6	NDUFS6
+Mitochondrial Ribosome (GO:0005761)		MRPS12	MRPL40	MRPL49	MRPS22	MRPL20	MRPL9	MRPL51	MRPL48	MRPL35	MRPL14	MRPL13	MRPL18	NDUFA7	MRPL28	MRPL37	MRPL39	MRPL34	MRPL43	MRPS14	MTG2
+Mitotic Spindle (GO:0072686)		FLCN	SKA1	TPX2	ZZZ3	HAUS2	YEATS2	KIF18B	EFHC1	KLHL22	MAP9	TBL1XR1	TUBB6	CKAP2	MAD2L1	HNRNPU	FAM161A	SIRT2	HAUS5	DCTN1	WRAP73	NUMA1	HDAC3	NEDD9	TFDP2	AGBL5	CDC27	CDC14A	HNF4G	WDR5	NUP62	KIF18A	LIMK2	FAM83D	KNSTRN	CDC6	LSM14A	AURKA	KIFC1	TUBB3	CDC7	CCDC117	GOLGA2	SPAG5	KIF11	CENPE	NUSAP1	IQCB1	CDC16	TMEM9	EPB41	MAP4	RPS3	EML1	KIF22	CDK1	KATNBL1	TAF1D	HAUS1	ECT2	KAT2A	CKAP2L	KIFC2	TADA2A	TUBG1	EML3	HAUS6	HAUS8	RACGAP1	HAUS4	NGRN	EML2	HAUS3	TBCK	TACC3	DIAPH1	MAPK1	CUL3	ESPL1	TBL1X	TADA3	CLTC	DLGAP5	DYNLL1	NCOR1	NIN	TUBB4B	NUDCD2	PHLPP2	CLASP2	DR1	PKP4	TPR	MAP1S	CAPG	ATAT1	MBIP	CCSAP	KAT2B	GEM	CDC42	NUDC	KIF23	SKA3
+Motile Cilium (GO:0031514)		GAS8	IFT27	PKD1	MKKS	DNAH11	DNAH5	IFT46	CAMSAP3	IFT52	SORD	DNAH2	IFT74	IFT81	IFT88	BBS2	PAFAH1B1	RSPH9	DAAM1	OFD1	ARL13B	DYNC2LI1	SPA17	BBS4
+Multivesicular Body (GO:0005771)		CTSH	VTA1	SFTPA2	CD63	ATP13A2	LAPTM4B	CHMP7	RAB27B	RAB27A	PMEL	TPT1	CHMP1B	CTSL	SORL1	CHMP3	TMEM9	CHMP4C	RAB11A	TSG101	HDAC6	CHMP1A	CHMP6	BACE1	CHMP2A	CHMP5	CHMP2B
+Multivesicular Body Membrane (GO:0032585)		CD63	ATP13A2	LAPTM4B	CHMP7	RAB27B	RAB27A	PMEL	CHMP1B	CHMP3	TMEM9	CHMP4C	CHMP1A	CHMP6	CHMP2A	CHMP5	CHMP2B
+Neuromuscular Junction (GO:0031594)		UNC13B	SNTA1	SYNC	PSEN2	PSEN1	SYNGR1	CDK5	FCHSD2	DLG3	ASCC1	DLG1	FCHSD1	DNAJA3	ITGB1	TBC1D24	TRIP4	SYNGR2	CHRNE
+Neuron Projection (GO:0043005)		RPS6	RAC3	GPHN	MAP9	KIF1B	DCTN1	ALS2	CXADR	STMN1	NF1	ANK3	RAB39B	CAMK2D	SLC12A2	DYRK1A	ANKS1A	COBL	INPP5K	MAP4	FZD4	HDAC6	BIN1	RPL28	PALLD	RNF40	ABL1	KIF1A	MME	RAB5A	LLGL1	SAMD14	IQGAP1	RBM3	FEZ1	SYT7	MAP7	PPT1	UBB	ATF4	PEX6	GNA12	CYFIP2	MAP2	FEZ2	MAP1S	PRNP	VAMP2	CAMK2B	OPA1	UHMK1	CYFIP1	GRIN3A	CRIPT	CAMK2G	GPER1	RAB13	HTT	EPHB3	PSMD10	SYAP1	IGSF9	MAPK8IP3	ATP7A	STMN3	SLC6A6	MLPH	STX3	SSNA1	ACADM	GRIN1	GIT1	GABRA4	FARP1	PPP2R1A	ATXN10	PICK1	ZWINT	ALCAM	PPP1R9B	CADM1	PTK2B	SHANK2	GABRB3	SETX	CHRNA5	MARK2	CPEB3	INSR	PRKAA2	STRN3	PPP1R9A	FXR2	PAK1	MYO5A	CPEB4	INPP5A	RGS14	PAFAH1B1	ANKRD27	DLG1	DOCK7	PRKAA1	STAU1	PARK7	ACAD9	RHOC	PI4K2A	CNIH4	PTGDR2	GSK3B	SMO	BBS7	LDLRAP1	PSEN1	HSPA8	TUBB3	TRAK2	SARM1	NSMF	DIP2B	APEX1	GCHFR	MARK3	FGF13	GSK3A	ZFYVE27	PLK2	NRSN2	SEMA6A	KIF3B	MAPK8	ARHGEF7	BNIP3	TMEM222	RTN4	FBXW11	MYO1D	SACS	GABRA2	SCGN	FXR1	FMR1	PTPRS	DLG3	BAG2	NMB	CD2AP	HOMER1	TAOK2	CAPN2	PTEN	CDK5	STRN4	DHX8	DVL1	PTGS1	TNFRSF25	SMN1	NCOA2	RGS11	CHRNE	COMT	PINK1	EMB	SPG11	ZNF385A	MARK1	MUL1	SSTR1	LIMK1	TRAPPC4	MCRS1	MICALL2	PGRMC1	RGS12	MTMR2	PACRG	APP	CHRNA3	PTK7	DBN1	MPST	ATP13A2	ZACN	RAB27A	WFS1	KIF1C	BBS2	HOMER2	NCDN	DHX36	DTNBP1	IGHMBP2	RNF6	RTN3	KPNA1	TRAK1	SPAST	RAB17	CLN3	STAT1	CCSAP	CDC42	FBXO7	CIB1	HOMER3
+Nuclear Chromosome (GO:0000228)		BRMS1L	SPIDR	GINS1	BAZ1A	NFRKB	SMC2	PSMC3IP	NOL6	BRMS1	LRIF1	HNRNPU	TFPT	EXOSC9	TOP2A	NCAPD2	RCC1	TERF2IP	DMAP1	JUN	ING3	MCM5	BRD4	INO80	CHD1	BIRC5	EP400	ZNHIT1	NCAPG	MCM2	SRCAP	MCM3	INO80B	NCAPH2	SUV39H1	MCRS1	TOP1	CFDP1	SMCHD1	RGS12	RUVBL2	KAT5	MCM4	IK	MCM6	GINS3	SMARCE1	DMC1	YY1	NCAPG2	RAD50	TUBG1	ACTR6	ACTR8	INO80E	MCM7	SETX	FIGNL1	HDAC8	ANP32E	BRD8	BLM	SF3B3	SUDS3	KIFAP3	LRPPRC	CHEK1	TRRAP	UCHL5	RAD51	RUVBL1	CHMP1A	GINS2	PHF12	NCAPD3	NCAPH	CDC45	SMC1A	PBRM1	SMC4
+Nuclear Inner Membrane (GO:0005637)		DPY19L2	MATR3	LEMD2	TM7SF2	DPY19L1	LEMD3	PSEN2	SMAD3	ATP11B	DPY19L3	UNC50	TMX4	MFSD10	LBR	EMD	CBX3	DPY19L4	TMEM120B	SIRT1
+Nuclear Membrane (GO:0031965)		PLRG1	TMEM38A	TXNL4A	TMEM38B	HPN	SUMO1	MATR3	POM121C	RB1CC1	YEATS4	ATP11B	CENPF	MYO6	DHCR7	SENP1	POMZP3	CREB3L4	DUSP2	TMEM168	ANXA4	ZNF383	TMX4	PHF20	ANKRD17	AHCTF1	TMEM147	AEN	GLE1	EMD	CDK4	TMC6	UTP18	CBX3	DPY19L4	SMPD4	NUP98	FZR1	NUP62	GTPBP4	POM121	INPP4A	SCAI	DPY19L2	RBMX2	LEMD3	MRPS23	PSEN1	GCH1	SH3BGRL2	SMAD3	CENPV	DCTN5	SYNE2	DPY19L3	MCM3AP	TMEM18	LMNB2	KLHDC2	RTEL1	KPNA2	TOR1A	NSMF	WTAP	MLX	MAD2L1BP	MFSD10	TXLNG	KPNB1	SIRT1	RETSAT	DNAJB12	GCHFR	NUP133	CTDNEP1	NUP155	TMEM120B	ITPR3	SURF4	SPIN1	NUP35	SLC30A1	SYNE4	ZC3HC1	ENO1	APEH	TRIM27	NUP50	KPNA4	CASC3	MX1	LEMD2	TMEM97	ZBTB1	TMEM201	DPY19L1	PUM2	LTC4S	SUN2	NDC1	NUP93	CUEDC2	UNC50	NR4A1	TBC1D20	DTX2	GLB1	CNEP1R1	RANGAP1	NRM	THAP7	LMNA	NUP153	LMNB1	RNF123	MRPS14	TNKS	WDR3	RANBP2	SUN1	PAK6	SDCBP	PAK1	TM7SF2	RNF6	DNAJB2	CPNE1	PSEN2	ARL6IP6	SLC16A3	NUP107	GAPDH	LPIN1	LYPLA1	SPAST	TOR1AIP1	BRAP	TPR	CLMN	LBR	NUP205	PHF8	MRPL36	DNAJC2	PRNP	IPO5	NUTF2	MBD1	XPO1	RAP1GAP2	GTF3C3	PHF11	TMEM53	AKIRIN1	EPC1	NUDT9
+Organelle Envelope Lumen (GO:0031970)		PNPT1	SIRT5	CHCHD10	COA4	ARL2	PINK1	NME4	ARL2BP	TIMM10B	COX17	TIMM9	BLOC1S1	STOML2	TIMM13	CPOX	TIMM8A	COA6	NDUFA8	NLN	AK2	TIMM8B	NDUFS1	CHCHD5	HTRA2	NDUFB7	CCAR1	TRIAP1	SORL1	CHCHD4	TIMM10	COX19	CYCS	MICU1	HAX1	THOP1	CHCHD2	CLPB	APP	PRELID1	CMC4	OPA1	DIABLO	TIMM23	MICU2	PANK2	REXO2	SOD1	AIFM1	FBXL4	UQCC2
+Organelle Inner Membrane (GO:0019866)		SLC25A11	NDUFV1	MRPS16	SHMT2	BCS1L	UQCC1	MRPS21	RDH13	MRPL13	MRPL47	EMD	COX6A1	MRPS17	MRPS11	DPY19L4	MRPL39	CLPX	NDUFV2	TIMM13	COX5A	COA3	MPV17L2	PARL	NDUFA5	DNAJC30	MRPS34	MRPS5	MRPL46	NDUFB3	HIGD1A	DPY19L3	COX20	MRPS18B	COQ6	RPS3	LETM1	MRPL12	TMEM70	IMMP2L	MRPS18C	MPC2	PMPCA	TIMM22	COX8A	SMDT1	SLC25A16	SLC25A20	MRPS27	DPY19L1	ECSIT	NDUFA8	NDUFAB1	SLC25A12	COX7A2L	MRPL38	COX6C	CYCS	COX10	MRPS36	NDUFA1	MRPS33	MICU2	PMPCB	MCUR1	COX5B	DHODH	UQCRC2	MRPL41	MRPL49	MRPL2	COX6B1	UQCR11	NDUFB9	NDUFB5	LBR	MRPL17	MRPL4	OPA1	SLC25A3	TMEM223	COX4I1	ENDOG	MTG2	TMEM11	ALDH18A1	MRPS12	MRPL44	MRPL40	NDUFS3	TIMM10B	CLU	TIMM17A	SLC25A22	PHB2	FOXRED1	COX18	SRC	UQCR10	MRPL43	MRPL55	LEMD3	MRPS23	SDHD	NDUFAF1	MCU	AURKAIP1	MRPS25	NDUFB7	COQ5	SLC25A1	NDUFA2	COA1	MPC1	MFSD10	SLC25A38	UQCC2	CHCHD1	GPD2	NDUFC1	NDUFAF3	NDUFA12	SFXN1	NDUFB11	MRPL52	MRPL16	LEMD2	MRPS9	NDUFB6	IMMT	MRPL18	MRPL19	UQCRC1	COX16	SPG7	TMEM126B	MPV17	MRPL28	LDHB	PTCD3	NDUFA6	TIMM50	SDHA	ACAD11	MRPS22	NDUFA10	TM7SF2	NDUFB8	UQCRFS1	ARL6IP6	CKMT2	MRS2	SDSL	TIMM10	MRPL14	IFI6	CYC1	MRPL22	SLC25A5	COQ4	MRPL3	ACAD9	GADD45GIP1	SLC25A21	YME1L1	PGS1	MATR3	SLC25A15	TIMM9	NDUFV3	ATP11B	COQ3	NNT	SLC25A19	MRPS6	TMX4	TMEM186	MRPL54	FLVCR1	NDUFAF2	BOK	DPY19L2	SLC25A32	NDUFB1	PSEN1	MRPL11	L2HGDH	NDUFA11	MRPS31	NDUFA4	TTC19	AIFM3	UQCRB	MRPL23	UQCRH	NDUFS4	UCP2	PGAM5	MRPL21	APOO	CCDC51	NDUFC2	ETFDH	FECH	TYMS	MRPL53	TMEM242	COQ7	SLC41A3	NDUFAF4	UQCRQ	GCAT	MRPS14	NDUFB4	SLC25A4	HSPD1	MRPL50	MRPL9	COX7C	CHCHD6	MRPL51	MRPS30	MRPS15	MRPL35	AFG3L2	NDUFS5	CRLS1	SDHC	TIMM17B	SLC25A29	TIMM23	TMEM160	NDUFS6	SCO2	CKMT1A	CHDH	MRPS28	MRPL48	SLC25A26	MRPS10	NDUFA7	MICU1	NDUFAF5	CBX3	MRPS26	PINK1	NME4	TOMM40	DAP3	HADHA	IMMP1L	SMIM20	GHITM	SMAD3	MRPS7	CHCHD3	MRPS2	CPT2	MRPL42	SCO1	TIMMDC1	TMEM65	NDUFAF6	MRPL37	AIFM1	TMEM120B	MRPS18A	MRPL45	NDUFB2	COX7B	STOML2	MRPL27	SLC25A10	MRPL10	SDHB	COQ9	ATAD3A	UNC50	COX15	MRPL33	DNAJC19	NDUFA13	MRPL34	OMA1	HADHB	NDUFA3	CDS2	MRPL20	MRPL24	PSEN2	MRPL1	NDUFB10	COX11	SLC25A13	MRPL36	AGK	SLC25A27	COQ2	SIRT1	TIMM44
+Organelle Outer Membrane (GO:0031968)		RMDN3	VDAC3	SYNJ2BP	FIS1	VPS13C	BCL2L2	MIEF1	CPT1A	PLD6	CYB5A	DHCR7	NLRX1	SLC44A1	MTX1	SAMM50	MOAP1	PHB2	ACSL1	DNM1L	BAK1	MAOA	QTRT1	EMD	AMBRA1	BNIP1	SMPD4	USP30	BCL2L11	MAVS	MIEF2	BOK	MFN1	TOMM7	CISD1	PINK1	SLC44A2	TOMM40	BID	BPHL	PSEN1	MTX2	MUL1	AIFM2	MTCH2	FOXO3	MFN2	TOMM5	AGPAT5	TOMM20	BAX	PGRMC1	FAM210B	TSPO	CISD2	RETSAT	RHOD	MFF	SFXN2	ITPR3	RAB11FIP5	RPS27A	BAD	SYNE4	PGAM5	ENO1	ACSL3	CYP27B1	SPIRE1	LTC4S	GDAP1	UBA52	ACSL4	BCL2L1	HK2	ULK1	ATF2	ZNFX1	VPS13A	CPT1B	FUNDC1	MYO19	HAX1	GPAM	BNIP3	ACACB	RAF1	UBB	HMOX1	KRAS	BNIP3L	SLC25A46	MCL1	HADHB	HINT2	GPAT2	BMF	GALK2	VDAC1	CASP8	TUFM	ATAD1	RHOT1	VDAC2	LPIN1	EXD2	TOMM22	TOMM34	RHOT2	RAB32	CYB5R3	CLMN	STARD7	CYB5B	OPA1	AGK	MSTO1	TMEM53	COASY
+Pericentric Heterochromatin (GO:0005721)		SMARCA5	CENPC	BAZ1A	POLE3	BAZ1B	CBX1	HELLS	FLYWCH1	INCENP	LRWD1	CHRAC1	SIRT6	NCAPD3	CBX3	CBX5	UHRF2
+Peroxisomal Matrix (GO:0005782)		ACOX3	IDH1	PAOX	EPHX2	CAT	CROT	ACAA1	PHYH	ECH1	AMACR	GNPAT	CRAT	ACOX1	HACL1	HMGCL	TYSND1	NUDT19	AGPS	IDE	ACOT2	PEX5	HSD17B4	GSTK1	ATM	SCP2	PEX7	NUDT12	LONP2	DHRS4	ACOT8	ECI2	GRHPR
+Peroxisomal Membrane (GO:0005778)		MAVS	MGST1	MAP2K2	PEX13	PEX26	IMPDH2	CAT	NBR1	PEX2	FIS1	FAR1	PEX11A	HMGCR	PEX1	TTC1	PEX19	DHRS7B	GDAP1	GNPAT	ATAD1	PECR	PEX10	PEX11B	PEX14	TRIM37	ALDH3A2	SLC27A2	AGPS	ABCD4	PEX5	HSD17B4	PEX12	SLC25A17	DECR2	MPV17	RAB8B	PEX16	ABCD3	ACBD5	PEX3	PEX7	FAR2	DHRS4	PEX11G	PEX6	PNPLA8	USP30
+Peroxisome (GO:0005777)		MVK	MGST1	SZT2	ACOX3	TMEM135	PEX13	CAT	FIS1	HMGCR	PEX1	ECH1	PEX19	DHRS7B	MIEF1	HACL1	TRIM37	TYSND1	IDE	DNM1L	HSDL2	MVD	RAB8B	ABCD3	LONP2	DHRS4	USP30	MAVS	MIEF2	PEX26	IMPDH2	PHYH	MUL1	PIK3C3	PECR	ACOX1	ALDH3A2	SLC27A2	AGPS	ABCD4	PEX5	GSTK1	MGAT4A	PEX16	MFF	DHRS4L2	IDH1	PAOX	CROT	ACAA1	PEX11A	TTC1	AMACR	GDAP1	GNPAT	CRAT	PEX14	NUDT19	NUDT17	PRDX5	ACOT2	PMVK	HSD17B4	PEX12	SLC25A17	MPV17	SCP2	ACBD5	PEX3	SYT7	SOD1	IDI1	ACOT8	PEX11G	PEX6	PNPLA8	MAP2K2	EPHX2	NBR1	PEX2	ACAD11	FAR1	ISOC1	MYO5A	ATAD1	PEX10	PEX11B	HMGCL	DECR2	ATM	PEX7	NUDT12	FAR2	ECI2	GRHPR
+Phagocytic Vesicle (GO:0045335)		SYK	ANXA3	CLCN3	ANXA11	TAP2	TCIRG1	RAB9A	PDIA3	RAB8B	RAB11B	PIKFYVE	RAB22A	ATP7A	HLA-E	HGS	RAB14	ATP6V0B	PIK3C3	APLP2	HLA-B	CALR	PIK3R4	ATP6V0D1	ITGB5	B2M	MTOR	RAB11FIP5	RAB7A	STX12	VAMP8	ATP6V0A1	RAB5A	ATP6V0E1	TAPBP	STX4	SNAP23	RAB11A	TAP1	ATG12	SYT7	ZDHHC5	SLC11A1	SNX3	APPL1	ATP6V0A2	ATG5	VAMP3	ATP6V0E2	UNC93B1	RAB32	ITGAV	RAB20	HLA-A	RAB34	RAB8A	HLA-C
+Phagocytic Vesicle Membrane (GO:0030670)		SLC11A1	ATP7A	ATP6V0A2	HLA-E	RAB7A	ATP6V0B	PIK3C3	VAMP8	ATG5	ATP6V0A1	VAMP3	APLP2	ATP6V0E2	ATP6V0E1	HLA-B	TAP2	TCIRG1	CALR	TAPBP	STX4	SNAP23	PIK3R4	TAP1	HLA-A	ATP6V0D1	ATG12	HLA-C	B2M	PIKFYVE
+Pigment Granule (GO:0048770)		SGSM2	MYO5A	RAB27B	RAB27A	PMEL	CTNS	HPS4	SYTL2	RAB17	RAB32	RAB9A	SYTL1	TMEM33	MFSD12	GCHFR
+Plasma Membrane Raft (GO:0044853)		FLOT1	BMPR2	IRS1	STIM1	SMO	PRKAR1A	SCARB1	EMP2	SRC	KIF18A	LRP6	PRKAR2A	CD320	HDAC6	CHRNA3	RANGRF	MAPK3	PRKACA	PTCH1	BMPR1A	ORAI1	INSR	MAPK1	EZR	DYNLL1	FLOT2	SMPD2	NOS3	CLN3	LRP8	PACSIN2
+Platelet Alpha Granule (GO:0031091)		CLU	PCDH7	TIMP1	VEGFB	VTI1B	EGF	MAGED2	OLA1	FN1	NHLRC2	ACTN4	APLP2	VPS33B	CYB5R1	STXBP3	APP	ACTN1	GTPBP2	CFD	IGF1	FERMT3	PDGFA	TMX3	CD109	ALDOA	SCCPDH	THBS1	VEGFA	TGFB1	TMSB4X	QSOX1	PCYOX1L	STXBP1	TEX264	CD9	F8
+Platelet Alpha Granule Lumen (GO:0031093)		ALDOA	IGF1	SCCPDH	VTI1B	EGF	FERMT3	THBS1	PDGFA	TGFB1	VEGFA	MAGED2	CLU	TMSB4X	OLA1	QSOX1	FN1	ACTN4	NHLRC2	PCYOX1L	TIMP1	TEX264	VEGFB	APP	ACTN1	F8	GTPBP2	CFD
+Polymeric Cytoskeletal Fiber (GO:0099513)		MYO1B	EPPK1	KIF14	PNN	MTA1	KIF5C	KIF20A	CDK5	CCT3	MYO6	TUBB6	MAP3K11	KIF1B	SIRT2	KIF3A	DCTN1	PKP2	CORO1B	SYNJ1	CCDC66	KIF21A	DNM1L	NCKIPSD	TUBE1	TWF1	POLB	DYNC1H1	TCP11L1	DPP9	FHDC1	APC	DMTN	TUBA4A	TPM1	CCT5	KIF12	KCNAB2	PSTPIP2	SLC1A4	TUBA1B	ACTG1	MYO9B	KIF20B	KIF15	KIFC1	PLS1	KRT18	PAWR	KIF5B	TUBB3	MX2	COBL	SARM1	TSC1	KIF11	CENPE	KATNB1	INF2	DYNC1I2	MAP4	EFHC2	HDAC6	TLK2	EML1	KIF22	DNAJA3	ACTN1	TPM4	FGF13	KRT10	PALLD	KIF16B	AIF1L	TPM3	TUBD1	CAMSAP1	GAS8	CLIP1	KIF1A	CCT6A	RHOQ	SYNM	ARHGAP6	MX1	CCT4	CEP57	KIFC2	TUBA1C	CCT7	TUBG1	PLS3	TBCD	MACF1	TWF2	CTTN	KIF1C	TUBA1A	NDRG1	DIAPH3	MARK2	KIF3B	IQGAP1	COTL1	CDK2AP2	KIF2C	PYCARD	TCP1	DIAPH1	TRIM54	TPM2	SYBU	LCP1	DST	MAP2K2	CDK5RAP3	DSP	KIF7	EZR	KIF3C	PAK1	MID1	CDK5RAP2	MYO5A	LRPPRC	TUBB4B	KATNAL2	KIF13A	CLASP2	MAP6D1	BAG2	NES	GAS2L1	PLEC	CCT2	MAP1S	TBCC	TBCE	DLG1	GAS2	MAPRE1	TUBG2	EVPL	OPA1	ARHGEF2	CCT8	RAC1	DPYSL2	DNM2	KRT8	KIF23
+Polysomal Ribosome (GO:0042788)		RPL31	LARP1	RPS28	RPL10A	RPS29	RPL39	RPL6	RPL18A	RPL32	RPS23	EIF3H	NUFIP2	RPL18	RPL36	RPL11	RPL24	RPL41	RPL30	RPL8	RPL7A	RPS26	RPS21	RPL38	DHX9	RPL36AL	LARP4B	RPL19
+Postsynaptic Density (GO:0014069)		GRIN3A	CRIPT	RPS19	GPER1	HOMER1	CNIH4	CDK5	GPHN	MAPK8IP2	RPL8	DLG5	PDLIM5	DTNB	LZTS3	USP50	RPS13	CTNND2	INPP4A	ARHGAP32	FOXM1	HIP1R	RPLP0	SEMA4C	RPL12	ADD1	NSMF	MTMR2	RPL38	DNAJC6	RPS3	CHRNA3	GRIN1	RPL14	PICK1	RPS25	PPP1R9B	PTK2B	RPL30	SAMD14	SHANK2	SIPA1L1	FABP5	RTN4	NETO2	RPS14	HOMER2	ADD3	PPP1R9A	FXR2	DTNBP1	NSF	RTN3	FXR1	USP8	RPS27	CPEB4	FMR1	PTPRS	DLG3	RGS14	DLG1	SIGMAR1	RPS18	PRNP	ARHGEF9	SCRIB	RPL7	TSC2	HOMER3
+Precatalytic Spliceosome (GO:0071011)		SNRPE	PRPF38A	TXNL4A	SNRPD3	LSM7	SF3A1	SMU1	PRPF8	SNRPA1	SNRPD2	SF3B4	SART1	SF3B3	SNRPG	MFAP1	RBMX2	SNRPF	PHF5A	SNRPB	CWC27	SF3B1	SF3B5	SNRNP200	LSM6	PRPF38B	PRPF4	RNF113A	LSM4	SF3A2	SNRPB2	DHX16	CWC22	EFTUD2	LSM5	SF3A3	LSM3	PRPF6	SNRPD1	WBP4	LSM2	SNIP1	SRRM2	MAGOHB	PRPF3	ZMAT2	IK	SF3B2	PRPF31
+Preribosome, Large Subunit Precursor (GO:0030687)		FTSJ3	NEDD4	WDR74	NOC2L	MRTO4	ZNF622	PES1	MAK16	EIF6	MDN1	WDR12	NIP7	NSA2	RRP15	LAS1L	EBNA1BP2
+Protein Serine/Threonine Phosphatase Complex (GO:0008287)		PPP3CA	PPP2R5A	PPP2R5E	PPP3CB	PPP3CC	PPP4R1	PPP4R2	PPP2R5B	PPP2R1A	PPP4C	PPP2R5D	PPP2R3A	PPP2R2A	PPP2CB	PPP2R2D	PPP2CA	PPP2R5C	PPP2R1B	PPP3R1
+Recycling Endosome (GO:0055037)		VPS52	RAB25	GPER1	RAB13	TPP1	SCAMP1	SNF8	CLCN3	GRIPAP1	SLC31A1	ARF6	ATP11B	RAP2A	ATP9A	GGA3	PDIA3	SCAMP3	FCHSD1	RAB8B	PLEKHA3	RAB11B	LMTK2	OCRL	STX6	SLC39A4	BOK	WASH4P	VTI1B	VIPAS39	TFRC	COMMD1	HLA-E	RAB4A	LDLRAP1	RAB14	MYO5B	AP1G1	RAP2C	TBC1D12	ARFGEF2	MICALL2	HLA-B	SCAMP4	TBC1D14	APP	EHD1	SLC11A2	B2M	RAB11FIP5	RAB11FIP3	STX8	AVL9	ZFYVE27	STX12	TUBG1	VAMP8	PLEKHJ1	OPTN	ULK1	RAB12	TMEM230	TUBA1A	VPS51	SORL1	NDRG1	RAB11A	STX7	TPCN1	SCAMP2	RAN	ATG9A	RAP2B	EHD4	SCAMP5	ATG9B	PLA2G3	CMTM6	LZTR1	ATP13A3	BAIAP3	MYO5A	SNX18	FCHSD2	VAMP3	RAB10	RAB35	DENND6A	VPS53	RAB17	VPS16	CLN3	RAB11FIP4	HLA-A	RAB8A	BACE1	PACSIN2	HLA-C	TUBGCP4	TBC1D17	RAC1
+Recycling Endosome Membrane (GO:0055038)		RAB11FIP3	SCAMP5	BOK	ATG9B	VTI1B	HLA-E	SCAMP1	CMTM6	RAB14	LZTR1	ZFYVE27	ATP13A3	BAIAP3	SLC31A1	ARF6	VAMP8	SNX18	OPTN	RAP2A	RAP2C	RAB12	VAMP3	ATP9A	HLA-B	RAB35	NDRG1	RAB17	GGA3	SCAMP4	RAB11A	PDIA3	RAB11FIP4	SCAMP3	HLA-A	TPCN1	RAB8B	RAB8A	SCAMP2	PACSIN2	HLA-C	RAB11B	EHD1	B2M	RAC1	ATG9A	RAP2B	EHD4	SLC39A4
+Respiratory Chain Complex I (GO:0045271)		NDUFA12	NDUFB4	NDUFA3	NDUFA5	NDUFB11	NDUFV1	NDUFS3	NDUFB2	NDUFA10	NDUFS2	NDUFB1	NDUFB8	NDUFC2	NDUFS8	NDUFB3	NDUFV3	NDUFA11	NDUFA8	NDUFAB1	NDUFAF1	NDUFB6	NDUFB10	NDUFA4	NDUFS1	NDUFB7	NDUFS7	NDUFB9	NDUFS5	NDUFA2	NDUFA7	NDUFB5	NDUFA13	NDUFS4	NDUFA1	NDUFA9	NDUFC1	NDUFV2	NDUFA6	NDUFS6
+Ribosome (GO:0005840)		RPL31	LARP1	RPS19	RPS28	RPS13	MRPS12	RPL10A	RPL39	RPS29	RPS4X	NCK1	HSPA14	RPL15	RPL18A	RPL6	RRBP1	DNAJC21	RPL32	RPS23	EIF3H	NUFIP2	MRPS7	RPS27	RPL18	RPL36	RPL11	RPL9	EIF2AK2	RPL24	RPL41	RPS11	RPS25	RPS5	BTF3	RPL30	RPL8	RPL7A	RPS26	MRPL13	RPS21	SERP1	RPL38	RPS18	RPS3	RPS7	DHX9	RPS9	RPL13A	LARP4B	RPL19	RPL36AL	SRP68	RPL27
+Rough Endoplasmic Reticulum (GO:0005791)		LRPAP1	SUCO	F12	SFTPA2	TMEM97	RAB14	PSEN1	SEC62	UBA1	PSMD2	TMCC1	STX17	SPPL3	HM13	RPL4	CKAP4	RANGRF	PKM
+Sarcolemma (GO:0042383)		SNTA1	DAG1	CCDC78	DTNBP1	SMPD4	SYNC	SYNM	VCL	SGCB	PDE9A	ATP1A1	PLEC	SGCD	ANK3	ITGB1	AHNAK2	RYR1	SLC2A1	CIB1	RYR2	ATP1B1
+Sarcoplasmic Reticulum (GO:0016529)		TMEM38A	SLC30A7	TMEM38B	CCDC78	FKBP1B	THBS1	ATP2A2	ATP2A1	JPH1	STIM1	S100A1	SYNE2	ATP2A3	SRI	ITPR1	HAX1	FSD2	JSRP1	RYR2	GSTM2	ANK3	RYR1	FKBP1A	ITPR3	CHERP
+Secretory Granule Lumen (GO:0034774)		PRSS8	SRP14	ACTR2	GNS	PSMD2	NPC2	VEGFB	PSMD7	PTPN6	IMPDH1	PSMB1	PPIA	IST1	NHLRC2	ACTN4	DYNLT1	ACTR1B	ATG7	PSMC2	KPNB1	MAN2B1	B2M	GTPBP2	DNAJC3	VCP	GM2A	PDGFA	PRDX4	ROCK1	NHLRC3	HSP90AB1	ERP44	CEP290	FABP5	PYCARD	DDX3X	GSDMD	FRK	PNP	CTSH	ALDOA	SCCPDH	AGL	CRISP3	NEU1	TIMP2	TMSB4X	TUBB4B	CDC37L1	PSMD14	TRAPPC1	FUCA1	CCT2	TEX264	GPI	FAF2	S100A11	PSMA5	F8	TOLLIP	CYFIP1	CLU	PSMD12	TIMP1	APAF1	PRKCD	CTSC	FAM3C	PKM	SERPINB1	MVP	IMPDH2	PSMB7	PGAM1	GYG1	VCL	DBNL	CSTB	PAFAH1B2	GLA	ACAA1	TADA2A	HEBP2	VEGFA	GSN	PGM2	HMGB1	ACLY	PSMD1	CYB5R3	XRCC5	DERA	ARMC8	PSMC3	SPTAN1	QPCT	ACTR10	APRT	OSTF1	FUCA2	DPP7	GDI2	NFKB1	VTI1B	EGF	ALAD	PSMD11	HSPA8	DSN1	OLA1	GRN	EEF1A1	PA2G4	NIT2	ACTN1	PSMA2	IDH1	IGF1	ARPC5	FERMT3	HSPA6	CREG1	PPIE	CTSZ	COTL1	CAB39	MAPK1	PFKL	SDCBP	COMMD9	PRDX6	QSOX1	PCYOX1L	DNASE1L1	XRCC6	HUWE1	JUP	FTL	CAT	CTSD	PYGL	CAND1	RNASET2	ANXA2	DYNC1H1	MAGED2	GUSB	CTSA	FN1	HEXB	HSP90AA1	PSMD6	MAPK14	ILF2	GGH	APP	CFD	PSMD13	AGA	CANT1	RAB27A	PSMD3	CNN2	GLB1	EEF2	PYGB	ALDOC	THBS1	TGFB1	PTGES2	LRG1	TXNDC5	CCT8	PDXK
+Secretory Granule Membrane (GO:0030667)		MGST1	CD63	TMEM30A	SCAMP1	CLU	DGAT1	BRI3	ADAM10	PCDH7	UBR4	ATP11B	DDOST	COPB1	TCIRG1	SRI	NRAS	PRCP	SLC18B1	TMC6	TOM1	TMEM179B	SERPINB6	ANXA7	RAP1B	ORMDL3	CD44	EXOC3	KCNAB2	SLC44A2	B4GALT1	RHOA	ATP8A1	RAB14	PSEN1	ENPP4	RAB6A	ARL8A	CD68	RAB24	RAP2C	APLP2	ANO6	HLA-B	SLC27A2	PGRMC1	CYB5R1	LAMTOR1	ITPR1	CPNE3	SLC15A4	RAB18	RAP1A	SVIP	PAM	ATAD3B	LAMP2	MLEC	ITPR3	TMED10	SURF4	HMOX2	TMED2	LAMP1	TSPAN14	AGPAT2	MME	RAB7A	TMX3	CD47	TMEM63A	SLC30A5	ABCC4	MAGT1	NDUFC2	RAB27B	VAMP8	DNAJC13	ATP6V0A1	CD59	NCSTN	DEGS1	HGSNAT	RHOG	SNAP23	VAPA	VPS13B	IGF2R	CD109	GAA	IQGAP1	FABP5	PTPRB	TMEM184A	LAMTOR3	DIAPH1	NBEAL2	CD55	RAP2B	PIGR	ATP6V1D	SLC11A1	RAB3D	DSP	ATP6AP2	ICA1	DYNC1LI1	RAB26	CMTM6	DYNLL1	MOSPD2	PSAP	ALDH3B1	CPNE1	SYNGR1	CYSTM1	DNAJC5	GLIPR1	PTPRJ	RAB10	AP2A2	LAMTOR2	RAB5C	RHOF	LPCAT1	CYB561	ITGAV	RAB5B	SNAP29	AP1M1	VAMP2	TMBIM1	ABCA3	CKAP4	HLA-C	MMP24	CD9	RAC1
+Serine/Threonine Protein Kinase Complex (GO:1902554)		CKS1B	CKS2	CDK3	CCNF	CCNI	PARD3	CCNB2	MCM2	CCND1	CCNY	CDK5	AZI2	CDK16	PRKCI	PARD6A	CAB39L	TANK	CDKN1A	STK11	CDK14	PRKCZ	CCNG1	TRAF3	ACVR1B	TGFBR1	CDK2	CNPPD1	STRADB	CCNC	PARD6G	CCNL2	CCND3	CDK4	CAB39	CCNG2	CDK1	TBK1	CCNA2	PARD6B
+Small Ribosomal Subunit (GO:0015935)		RPS3A	RPS27A	RPS19	RPS28	RPS13	MRPS12	RPS29	RPS6	RPS4X	RPS23	UBA52	RPS27	RPS15A	RPS25	RPS11	RPS5	RPS24	RPS20	RPS8	RPS4Y1	RPSA	RPS26	RPS21	RPS2	MRPS6	RPS18	RPS15	RPS16	RPS3	RPS7	RPS9	EIF2S1	RPS27L	RPS14	FAU
+Small-Subunit Processome (GO:0032040)		RPS19BP1	RPS3A	RPS27A	RRP7A	RPS19	RPS28	MRPS12	PDCD11	RPS13	RPS6	WDR3	RPS4X	BMS1	WDR75	FCF1	RRP9	EMG1	RPS23	PNO1	NOL6	EXOSC10	NOP56	RPS27	WDR46	DCAF13	FBL	PRKDC	RPS15A	RPS5	RPS11	UTP20	RPS24	NOL10	RPS8	UTP6	KRR1	TBL3	MPHOSPH10	WDR43	WDR36	NOP58	RPS16	HEATR1	RPS7	DNTTIP2	NOP14	PWP2	NGDN	RPS9	UTP14A	UTP18	NOL7	DIMT1	XRCC5	UTP3	UTP23	NAT10	RPS14
+Specific Granule (GO:0042581)		ANXA3	TMEM30A	CTSD	SCAMP1	CLU	DGAT1	CLCN3	ANXA11	ADAM10	ARMC8	UBR4	SPTAN1	QPCT	TMC6	TOM1	NFKB1	PTPN6	STXBP2	ORMDL3	SLC44A2	KCNAB2	ATP8A1	VCL	ANO6	STX3	SLC27A2	PGRMC1	LAMTOR1	SLC15A4	STXBP3	ILF2	GGH	RAP1A	KPNB1	NIT2	MLEC	B2M	HMOX2	TSPAN14	AGPAT2	CD47	TMEM63A	CANT1	RAB27A	VAMP8	CD59	CNN2	DEGS1	HGSNAT	STX4	SNAP23	CTSZ	ERP44	CEP290	PTPRB	LAMTOR3	GSDMD	RAP2B	ATP6V1D	FRK	CRISP3	CMTM6	NEU1	MOSPD2	ALDH3B1	TIMP2	DNAJC5	QSOX1	PTPRJ	LAMTOR2	ITGAV	LRG1	DNASE1L1	AP1M1	TMBIM1	CKAP4	JUP	MMP24	PDXK	TOLLIP	CYFIP1
+Specific Granule Lumen (GO:0035580)		FRK	CTSD	CRISP3	NEU1	TIMP2	CANT1	RAB27A	ARMC8	QSOX1	VCL	SPTAN1	CNN2	QPCT	LRG1	CTSZ	DNASE1L1	ERP44	CEP290	ILF2	GGH	GSDMD	KPNB1	NIT2	JUP	NFKB1	PDXK	B2M	PTPN6	TOLLIP	CYFIP1
+Specific Granule Membrane (GO:0035579)		TMEM30A	SCAMP1	CLU	DGAT1	UBR4	TMC6	TOM1	ORMDL3	SLC44A2	KCNAB2	ATP8A1	ANO6	SLC27A2	PGRMC1	LAMTOR1	SLC15A4	RAP1A	MLEC	HMOX2	TSPAN14	AGPAT2	CD47	TMEM63A	VAMP8	CD59	DEGS1	HGSNAT	SNAP23	PTPRB	LAMTOR3	RAP2B	ATP6V1D	CMTM6	MOSPD2	ALDH3B1	DNAJC5	PTPRJ	LAMTOR2	ITGAV	AP1M1	TMBIM1	CKAP4	MMP24
+Spindle (GO:0005819)		RMDN3	CDC20	FLCN	SKA1	TPX2	ZZZ3	KIF20A	YEATS2	EFHC1	ANXA11	KLHL22	KIF4A	ANAPC5	CENPF	MAP9	TBL1XR1	TUBB6	CKAP2	JTB	HNRNPU	MAD2L1	FAM161A	SIRT2	DCTN1	WRAP73	MMS19	TTK	PARP4	NUMA1	HDAC3	NEDD9	TFDP2	CALM1	MZT2B	AGBL5	CDC27	CDC14A	AURKB	POLB	CBX3	HNF4G	ANAPC7	WDR5	NUP62	LIMK2	KATNA1	FAM83D	KNSTRN	CDC6	LSM14A	MZT1	AURKA	KIFC1	ERCC2	CALM2	TUBB3	DCUN1D5	MAEA	PRC1	CDC7	CCDC117	GOLGA2	SPAG5	BOD1	CENPE	KIF11	IQCB1	KATNB1	NUSAP1	TTL	CDC16	TMEM9	INCENP	EPB41	MAP4	CSNK1A1	RPS3	EML1	KIF22	CALM3	CDK1	KATNBL1	TAF1D	ECT2	CSNK1D	KIF16B	KAT2A	CKAP2L	PSRC1	SPATA5	KIFC2	RMDN1	TADA2A	CYLD	SAC3D1	TUBG1	TUBGCP3	ARL3	EML3	CBX1	CTDP1	BUB1B	RACGAP1	CCDC57	NGRN	SPATA5L1	EML2	KIF3B	HAUS3	SKA2	CSPP1	KIF2C	TBCK	HMMR	TACC3	DIAPH1	MAPK1	CUL3	FBXO5	ESPL1	TBL1X	TADA3	CLTC	PLK1	DLGAP5	SPICE1	DYNLL1	NCOR1	NIN	KIFAP3	TUBB4B	KATNAL2	NUDCD2	PHLPP2	MAD2L2	CLASP2	CCAR2	DR1	RGS14	PKP4	MZT2A	TPR	MAP1S	CAPG	ATAT1	MAPRE1	TUBG2	CHAMP1	MBIP	CCSAP	KAT2B	GEM	CDC42	NUDC	KIF3A	KIF23	SKA3
+Spindle Microtubule (GO:0005876)		RMDN3	KIF18A	SKA1	CLTC	PSRC1	PLK1	ZW10	HAUS2	AURKA	CHMP7	KIF18B	KIFAP3	CALM2	KIF4A	RMDN1	TUBG1	EML3	MAP9	PRC1	HAUS6	HNRNPU	HAUS8	CLASP2	FAM161A	BOD1	CHMP1B	HAUS5	KNTC1	KIF11	CENPE	PAFAH1B1	PARP4	CHMP3	CCDC57	HAUS4	NUMA1	CHMP4C	RAB11A	MAP1S	TTL	KIF3B	ZWILCH	HAUS3	CALM1	SKA2	CHMP1A	CHMP6	AURKB	POLB	CHMP2A	CALM3	CDK1	CHMP5	HAUS1	CSNK1D	KIF3A	CHMP2B	SKA3
+Spliceosomal snRNP Complex (GO:0097525)		SNRNP40	SNRPE	TXNL4A	TXNL4B	SNRPD3	LSM7	SF3A1	PRPF8	SNRPA1	SNRPD2	SF3B4	SNRPG	SF3B3	PRPF39	RBMX2	SNRPF	PHF5A	SNRPB	BUD13	SF3B1	SNRNP70	LUC7L	SF3B5	SNRNP200	DDX46	LSM6	PRPF4	PRPF40A	LSM4	SF3A2	HTATSF1	SNRPA	TSSC4	LUC7L3	SNRPB2	PPIH	PRPF18	DDX23	LSM5	DDX39B	HNRNPC	LSM3	PRPF40B	PRPF6	SF3A3	SNRPD1	CD2BP2	LSM2	SNIP1	SF3B2	PRPF31
+Spliceosomal tri-snRNP Complex (GO:0097526)		SNRNP40	SNRPE	TXNL4A	TXNL4B	SNRPD3	LSM7	PRPF8	SNRPD2	SNRPG	SART1	SNRPF	SNRPB	SNRNP200	LSM6	SNRNP27	PRPF4	LSM4	RBM42	SNRPA	PPIH	PRPF18	DDX23	EFTUD2	LSM5	LSM3	PRPF6	SNRPD1	LSM2	PRPF3	ZMAT2	USP39	PRPF31
+Synaptic Vesicle Membrane (GO:0030672)		DOC2A	CLTA	UNC13B	ICA1	RAB26	DTNBP1	GABRA2	SYNGR1	SEMA4C	PTPRS	CLTB	VAMP2	SYPL1	SLC18B1	SYNGR2	SV2A
+Tertiary Granule (GO:0070820)		CTSD	CLU	LTA4H	ARMC8	UBR4	COPB1	SPTAN1	TCIRG1	QPCT	NRAS	ASAH1	PRCP	TMC6	TMEM179B	SERPINB6	PTPN6	STXBP2	GOLGA7	KCNAB2	RHOA	RAB14	ENPP4	ARL8A	RAP2C	DBNL	ANO6	LAMTOR1	CST3	STXBP3	ILF2	GGH	SVIP	NIT2	ATAD3B	CSTB	LAMP2	B2M	LAMP1	IDH1	TSPAN14	CD47	TMEM63A	CANT1	VAMP8	ATP6V0A1	CD59	CNN2	FTH1	HGSNAT	SNAP23	GAA	STX7	PTPRB	LAMTOR3	DIAPH1	NBEAL2	GSDMD	CD55	RAP2B	CTSH	ALDOA	SLC11A1	ALDOC	DSP	ATP6AP2	DYNC1LI1	CRISP3	DYNLL1	PGM1	TIMP2	CYSTM1	QSOX1	AP2A2	LAMTOR2	LRG1	YPEL5	RAC1	CYFIP1
+Tertiary Granule Lumen (GO:1904724)		CTSH	IDH1	ALDOC	GOLGA7	CTSD	CRISP3	LTA4H	PGM1	TIMP2	CANT1	ARMC8	QSOX1	SPTAN1	CNN2	DBNL	FTH1	QPCT	LRG1	CST3	ASAH1	ILF2	GGH	YPEL5	NIT2	CSTB	B2M	GSDMD	PTPN6	CYFIP1
+Tertiary Granule Membrane (GO:0070821)		SLC11A1	TSPAN14	KCNAB2	ATP6AP2	CD47	CLU	DYNLL1	RAB14	TMEM63A	CYSTM1	VAMP8	UBR4	RAP2C	CD59	COPB1	ANO6	LAMTOR2	HGSNAT	SNAP23	GAA	NRAS	PTPRB	SVIP	TMC6	LAMTOR3	NBEAL2	SERPINB6	RAP2B
+Tight Junction (GO:0070160)		CHAF1B	RAB13	EPPK1	PARD3	SIPA1L3	PRKCI	PARD6A	CXADR	ANK3	MARVELD3	PARD6B	APC	AMOTL1	F11R	USP53	EPCAM	RAP2C	CYTH1	UBN1	MICALL2	PRKCZ	ECT2	FRMD4B	GJA1	YBX3	CGN	CLDN3	WNK4	TJP3	TBCD	CLDN7	VAPA	LSR	PARD6G	CLDN12	RAP2B	OCLN	TJP2	TJP1	MTDH	MARVELD2	TGFBR1	OCEL1	DLG1	CLDN4
+trans-Golgi Network (GO:0005802)		ARL5A	MYO1B	VPS52	GPER1	RAB13	PI4K2A	VTI1A	SCAMP1	TRAPPC6B	USP6NL	AP1M2	CLVS1	PREPL	FUT4	ARFGEF1	ATP9A	ARFIP1	GBF1	NDST1	AP4S1	TRAPPC9	YIPF1	ATP8B2	GGA3	RAB9A	SCAMP3	PIK3C2A	AP1S2	PLEKHA3	TBC1D23	GGA1	GPR108	OCRL	STX6	SMPD4	ATP2C2	KLHL20	YIPF2	COG3	BOK	AP1B1	ATP7A	RGP1	SLC10A7	GOLPH3	PHIP	ATP8A1	BACE2	AP1G1	HOOK2	RAB6A	SYS1	RHOBTB3	RAB21	GRN	ARFGEF2	ST3GAL1	INPP5K	SCAMP4	SNX9	ARFRP1	COG7	ATP9B	RAB30	GCC2	COG4	RABEPK	STX16	AP4B1	TJAP1	TMEM79	APP	DPY30	SLC24A5	CCDC91	PCSK7	AP1S1	SLC30A6	AP4E1	ATP8B1	WLS	CNST	CLTA	COG8	PRKD1	ARFIP2	STX8	ARL5B	CDH1	CHID1	MME	ARAP1	CBY1	AP4M1	STX10	PICK1	ATXN2	COG6	OPTN	M6PR	PLEKHJ1	LLGL1	DENND5A	VPS54	SLC39A9	TMEM230	VPS51	SORL1	PI4K2B	GOLPH3L	RAB11A	TRAPPC6A	IGF2R	YIPF5	GOLT1A	SCAMP2	CABP7	TMEM165	ATG9A	BIRC6	SCOC	TGOLN2	SCAMP5	COG2	FURIN	ATG9B	GOLGA4	GSAP	CLTC	COG1	FAM91A1	BAIAP3	VAMP4	BICD1	KIF13A	GGA2	VAMP3	CLASP2	YIPF6	RAB10	ATP2C1	ARL1	VPS53	RAB32	CLN3	AP1M1	VAMP2	RAB8A	BACE1	OSBP	MMP24	YIPF4	RAC1	COG5
+trans-Golgi Network Membrane (GO:0032588)		MYO1B	VPS52	VTI1A	SCAMP1	USP6NL	AP1M2	CLVS1	ATP9A	ARFIP1	NDST1	AP4S1	RAB9A	SCAMP3	AP1S2	STX6	ATP2C2	COG3	BOK	AP1B1	ATP7A	RGP1	SYS1	AP1G1	RAB6A	RHOBTB3	ST3GAL1	SCAMP4	ARFRP1	COG7	RABEPK	COG4	TMEM79	STX16	AP4B1	APP	SLC24A5	AP1S1	SLC30A6	AP4E1	CLTA	COG8	ARFIP2	AP4M1	STX10	PICK1	COG6	M6PR	LLGL1	VPS54	VPS51	GOLPH3L	IGF2R	SCAMP2	CABP7	TMEM165	SCAMP5	COG2	CLTC	COG1	BAIAP3	KIF13A	VAMP3	ARL1	VPS53	AP1M1	RAB8A	MMP24	VAMP4	COG5
+Transcription Factor TFIID Complex (GO:0005669)		TAF7	GTF2A2	GTF2E2	TAF5L	GTF2H5	GTF2H2	TAF9B	TAF4	TAF6	GTF2E1	TAF4B	TAF11	ERCC3	TCEA1	GTF2A1	GTF2H3	TAF9	TAF1	TAF13	TAF8	TBP	GTF2F1	TAF5	TAF2	PAAF1	GTF2H4	TAF12	TAF10	GTF2B
+Transcription Factor TFTC Complex (GO:0033276)		TAF6	TAF7	KAT2A	TAF10	USP22	ENY2	TADA3	TAF2	TRRAP	TAF5L	TAF9B	TAF12	SUPT3H	ATXN7L3	TAF5	TAF4	TAF9
+Transport Vesicle Membrane (GO:0030658)		TMED2	VTI1B	SEC24B	SEC24D	HLA-E	MCFD2	CNIH4	STX5	VTI1A	SEC23A	SLC30A5	SEC31A	GOSR2	LMAN1	SAR1B	CD59	SEC13	CNIH1	USO1	HLA-B	SEC24A	HLA-A	RAB1A	VAMP2	SEC24C	HLA-C	SEC16A	B2M	ECE2	TMED10
+Vacuolar Lumen (GO:0005775)		PRSS8	TPP1	CTSD	ACTR2	GNS	IDUA	FMOD	AGRN	SDC1	RNASET2	NPC2	ACTR10	ASAH1	ANXA2	PRKCD	CTSC	DYNC1H1	FUCA2	DPP7	GDI2	IMPDH1	GUSB	CTSA	HSPA8	IST1	DSN1	GALC	GYG1	TOLLIP	GRN	HEXB	HSP90AA1	IDS	PA2G4	NAGLU	GGH	MAN2B1	LAMP2	CTSF	SDC4	DNAJC3	IFI30	GLA	VCP	CHID1	GM2A	AGA	ATP13A2	HEXA	TADA2A	HEBP2	NHLRC3	SCARB2	CTSL	CREG1	GAA	GLB1	FABP5	PYCARD	MAPK1	PPT1	PPT2	NAAA	SMPD1	FRK	PYGB	SDCBP	NEU1	PSAP	SGSH	PRDX6	TUBB4B	PLD3	ACLY	PSMD1	TRAPPC1	FUCA1	PTGES2	CYB5R3	HSPG2	CCT2	SDC2	FAF2	TXNDC5	LGMN	CCT8	FTL
+Vacuolar Membrane (GO:0005774)		VAC14	GABARAPL2	SH3GLB1	ENTPD4	PRKD1	ATP6AP2	MAP1LC3B	ATP6V0A2	VMP1	SLC36A4	TECPR1	GABARAP	VPS4A	CHMP7	ATP6V1G2	ATP6V0A1	ULK1	NPRL2	ATP6V1F	TMEM199	UVRAG	CHMP1B	TCIRG1	CHMP3	GABARAPL1	STX17	CHMP4C	TEX264	WDR24	CHMP1A	ATP6V0D1	JMY	CHMP6	WDFY3	WDR59	MAP1LC3A	WDR81	CHMP2A	ATG16L2	CHMP5	ATP6V1G1	ATG9A	ATG16L1	CHMP2B	CCDC115
+Vacuolar Proton-Transporting V-type ATPase Complex (GO:0016471)		ATP6V1D	ATP6V0A2	ATP6V1A	ATP6V0B	ATP6V1G2	ATP6V0A1	ATP6V1F	ATP6V1C2	TMEM199	ATP6V0E2	ATP6V1C1	TCIRG1	ATP6V1E1	ATP6V0D1	ATP6V1B2	ATP6V1G1	ATP6V1H	CCDC115
+Vesicle (GO:0031982)		MYO1B	SLC9A3R1	CD2AP	CLCN3	IFT172	WDR54	YWHAZ	SPTAN1	GPRC5C	MYO1F	ATP1A1	ALS2	HSPA1B	EGFR	ARRDC4	SYNJ1	SLC26A6	ANXA4	RIPK2	CALM1	PIK3C2A	ANXA2	PICALM	VPS26A	DPP7	GDI2	HSPA1A	TSPAN4	ECE1	GIGYF2	PKM	PIKFYVE	RAB39B	PCMT1	CFL1	GIPC1	SLC30A7	VTI1B	TFRC	RAB4A	SLC12A2	RHOA	PPIA	ITSN1	MYO5B	CALM2	DGKQ	GNAI2	KIF5B	MVB12A	MAN1B1	RAB21	VCL	APLP2	GNB1	LZTS2	TAGLN2	CORO1C	MYL6	PRKCZ	CST3	DYNC1I2	PACRG	DNAJC6	BIN1	MUC1	CALM3	SLC11A2	CTSF	ARRDC1	E2F1	CBR1	DNAJC3	RPS27A	EFEMP2	STX8	ATP13A2	TUBA1C	CAPS	MYO1E	STX10	STX12	UBA52	VAMP8	MYO1C	SNX1	CD59	NOL3	DCTN2	PEG10	GAK	RAB11A	VAPA	MYO19	STX7	AKT1	ITSN2	PDCD6IP	UBB	SYBU	CYB561D2	EPS8L2	ATP1B1	EPS8	MYO1D	CLIC1	AHNAK	MGAT1	APPL1	EZR	SDCBP	CLTC	STX5	BAIAP2L2	FLOT2	ALDH3B1	COL6A2	MYO5A	TUBB4B	GAPDH	ACTB	TSPAN1	CD81	NOS3	MYO5C	BASP1	VAMP2	RAB34	ARHGEF2	CD9	CIB1	ASPSCR1	GNB2
+Vesicle Coat (GO:0030120)		NECAP1	COPZ2	CLTA	EPN3	SEC24D	SEC24B	TMED7	KLHL12	SEC23A	SAR1A	SEC23B	SEC31A	NECAP2	EPN1	SAR1B	COPB1	SEC13	PDCD6	PEF1	CLTB	SEC24A	TMED3	COPG2	COPB2	CLINT1	EPN2	COPG1	SEC24C	COPZ1	CIDEB	COPE	COPA
+Vesicle Membrane (GO:0012506)		GIPC1	SLC30A1	ARRB1	GPER1	AP1B1	VAMP5	APPL1	RAB4A	ZNRF2	SLC12A2	CLU	AP1M2	BAIAP2L2	SPIRE1	SPIRE2	HTT	CLCN3	MYO5B	DGKQ	AP1G1	RAB21	KIF1B	RAB10	VOPP1	TOR1A	SYNJ1	NOS3	SLC26A6	ANXA4	RAB11A	MFSD10	SNX9	AP1M1	AP1S2	TMEM184A	SLC39A13	C2CD5	APPBP2	PIKFYVE	ECE2	AP1S1	RALA	ASPSCR1

Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_70cr_GO_CC/gseapy.gene_set.prerank.report.csv

@@ -0,0 +1,199 @@
+Name,Term,ES,NES,NOM p-val,FDR q-val,FWER p-val,Tag %,Gene %,Lead_genes
+prerank,Mitochondrial Inner Membrane (GO:0005743),0.5441156265526182,2.7337463073327974,1.000000e-03,1.000000e-03,1.000000e-03,166/282,28.23%,SLC25A5;MRPS7;UQCRC1;SLC25A3;MRPL48;COQ9;BDH1;COX16;NDUFB9;MRPL37;CDS2;MRPS15;MPC1;TIMMDC1;UQCRFS1;TIMM23;TIMM13;NDUFA6;PHB2;HADHA;MRPS27;MRPL49;NDUFB11;UQCR11;TIMM50;CHCHD3;NDUFAF6;NDUFA10;MRPL45;NDUFB4;UQCR10;MICU1;MRPL9;MRPL33;MRPS33;MRPS12;ENDOG;STOML2;MRPL52;NDUFC1;MPV17;SDSL;MRPS11;ECSIT;NDUFAF5;IMMT;MRPL38;MRPS2;NDUFA4;MRPL21;MRPL39;MRPL11;MRPS9;TOMM40;MRPL47;MRPL4;AIFM1;MPC2;NDUFAF3;COX5A;MPV17L2;MRPL54;NDUFA3;COX10;SDHA;MRPL51;NDUFS3;MRPL16;MRPL42;GCAT;SLC25A10;NDUFV2;SDHB;RPS3;L2HGDH;COA3;UQCRC2;UQCC1;TIMM9;MRPL2;CYC1;SLC25A11;MRPL18;GADD45GIP1;SDHC;UQCRH;SLC25A1;NDUFS4;MRPL34;MRPS14;MRPL20;COX18;FECH;TMEM126B;NDUFAF1;NDUFAF4;COA1;MRPL46;MRPS17;MRPL40;ETFDH;MRPL44;NDUFA7;COX6B1;TIMM22;COX7B;NDUFC2;TMEM223;NDUFB10;MRPL27;MRPL17;TIMM10;MRPL3;TMEM186;MRPL22;MRPL41;MRPL36;MRPS22;NDUFA12;UCP2;COQ5;MRPL43;PMPCA;APOO;ALDH18A1;TIMM44;SLC25A15;COX15;NDUFA13;SCO1;SMIM20;MRPS34;CKMT1A;AIFM3;MRS2;NDUFAB1;TIMM10B;TIMM17A;MRPS16;PGAM5;SMDT1;COX5B;NDUFB3;AGK;MRPL10;NDUFV3;TIMM17B;GHITM;SLC41A3;HSPD1;DAP3;MRPL35;COQ6;MRPL55;PTCD3;MRPL19;MRPS18B;NDUFB5;CPT2;IFI6;TMEM70;MRPL14;COQ4;UQCC2;MRPS23;MRPS18A
+prerank,Organelle Inner Membrane (GO:0019866),0.5193685997340248,2.6180307069736655,1.000000e-03,1.000000e-03,1.000000e-03,169/299,28.23%,SLC25A5;MRPS7;UQCRC1;SLC25A3;MRPL48;COQ9;COX16;NDUFB9;MRPL37;CDS2;MRPS15;MPC1;TIMMDC1;UQCRFS1;TIMM23;TIMM13;NDUFA6;PHB2;HADHA;MRPS27;MRPL49;NDUFB11;UQCR11;TIMM50;CHCHD3;NDUFAF6;NDUFA10;MRPL45;NDUFB4;UQCR10;MICU1;MRPL9;MRPL33;MRPS33;MRPS12;ENDOG;STOML2;MRPL52;NDUFC1;MPV17;SDSL;MRPS11;ECSIT;NDUFAF5;IMMT;MRPL38;MRPS2;NDUFA4;MRPL21;MRPL39;MRPL11;MRPS9;TOMM40;MRPL47;MRPL4;AIFM1;MPC2;NDUFAF3;COX5A;MPV17L2;MRPL54;NDUFA3;COX10;SDHA;MRPL51;NDUFS3;MRPL16;MRPL42;GCAT;SLC25A10;NDUFV2;SDHB;RPS3;L2HGDH;COA3;UQCRC2;UQCC1;TIMM9;MRPL2;CYC1;SLC25A11;MRPL18;GADD45GIP1;SDHC;UQCRH;SLC25A1;NDUFS4;MRPL34;MRPS14;MRPL20;COX18;FECH;TMEM126B;NDUFAF1;NDUFAF4;COA1;MRPL46;MRPS17;MRPL40;ETFDH;MRPL44;NDUFA7;COX6B1;TIMM22;COX7B;NDUFC2;TMEM223;NDUFB10;MRPL27;MRPL17;TIMM10;MRPL3;TMEM186;MRPL22;MRPL41;MRPL36;MRPS22;NDUFA12;UCP2;COQ5;UNC50;MRPL43;LBR;PMPCA;APOO;ALDH18A1;TIMM44;SLC25A15;COX15;NDUFA13;SCO1;SMIM20;MRPS34;EMD;DPY19L2;CKMT1A;AIFM3;MRS2;NDUFAB1;TIMM10B;TIMM17A;MRPS16;PGAM5;SMDT1;COX5B;NDUFB3;AGK;MRPL10;NDUFV3;TIMM17B;GHITM;SLC41A3;HSPD1;DAP3;MRPL35;COQ6;MRPL55;PTCD3;MRPL19;MRPS18B;NDUFB5;CPT2;IFI6;TMEM70;MRPL14;COQ4;UQCC2;MRPS23;MRPS18A
+prerank,Mitochondrial Matrix (GO:0005759),0.4933519907417336,2.4704609817261693,1.000000e-03,1.000000e-03,1.000000e-03,166/262,34.29%,NDUFS7;C1QBP;ARG2;MRPL48;BDH1;ARL2;BOLA3;GLUD1;ARL2BP;GOT2;MRPL37;HYKK;FH;ECHS1;NDUFS8;HADHA;CCNB1;MRPL49;ACO2;POLDIP2;MRPL9;POLRMT;MRPS12;YARS2;MDH2;BCAT2;ALDH6A1;TST;DNAJC15;SUCLG1;FASTKD2;MMAB;LIPT2;PDSS2;PYCR1;ALDH4A1;TK1;MRPL39;MRPL11;ISCU;PDSS1;GPX1;TXN2;PPA2;OXA1L;HSPA9;PITRM1;DGUOK;ETHE1;DNAJA3;GSTZ1;MRPL51;NDUFS3;ALDH1B1;NDUFA9;DARS2;MTHFD1L;PCCB;GCDH;RPS3;BLOC1S1;MPST;LARS2;MRPL18;PTCD1;GADD45GIP1;TFB2M;SUPV3L1;IDH3A;NDUFS2;MRPL34;CLPP;MRPS14;MRPL20;MRRF;MCCC2;OGDH;FECH;ISCA2;NSUN4;HMGCS2;MRPL40;HMGCL;ETFDH;NDUFA7;IDH3G;ACAA2;HSD17B10;BCKDK;MRPS22;COQ5;ABHD10;MRPL43;PYCR2;ELAC2;GFM2;CS;ACOT2;GSTK1;ME2;TIMM44;COASY;ABCE1;NUDT2;LONP1;PHYKPL;SUCLA2;TRMT5;TEFM;MCAT;LYRM4;NDUFAB1;PRDX3;SOD1;NMNAT3;HIBADH;SMDT1;PCCA;TFB1M;BCKDHB;IDH3B;HSPD1;TFAM;IARS2;METTL4;FASTKD3;MRPL35;GLS2;PCK2;NFS1;DLST;GSR;CDK1;TBRG4;MRPL14;PDK3;UQCC2;OGG1;ERAL1;IDH2;PDHB;WARS2;DECR1;DLD;GRPEL1;AUH;ETFA;SSBP1;ISCA1;ETFB;ACSS1;DHTKD1;ALKBH7;NT5M;ALAS1;PDK2;TXNRD2;ACAT1;NUDT1;ACSS2;PDE12;OAT;TYMS;IBA57;THEM4;MCCC1
+prerank,Mitochondrial Membrane (GO:0031966),0.4610560274109144,2.4226317423245036,1.000000e-03,1.000000e-03,1.000000e-03,206/407,28.23%,MAOA;SLC25A5;MRPS7;VDAC3;UQCRC1;SLC25A3;MRPL48;COQ9;COX16;RPS27A;NDUFB9;MRPL37;CDS2;MRPS15;MPC1;TOMM5;TIMMDC1;UQCRFS1;TIMM23;TIMM13;NDUFA6;PHB2;HADHA;MRPS27;MRPL49;NDUFB11;UQCR11;TIMM50;CHCHD3;NDUFAF6;TOMM22;NDUFA10;MRPL45;NDUFB4;UQCR10;MICU1;MTCH2;MRPL9;UBB;CYB5A;MRPL33;RAB32;MRPS33;MRPS12;ENDOG;STOML2;MRPL52;NDUFC1;MPV17;SDSL;MRPS11;ECSIT;TMBIM6;NDUFAF5;IMMT;MRPL38;RHOD;MRPS2;NDUFA4;MRPL21;MRPL39;MRPL11;MRPS9;TOMM40;MRPL47;OXA1L;MRPL4;BPHL;AIFM1;MPC2;NDUFAF3;HINT2;COX5A;MPV17L2;MRPL54;NDUFA3;COX10;SDHA;MRPL51;NDUFS3;NDUFA9;CISD1;MRPL16;ABCB6;MRPL42;GCAT;SLC25A10;NDUFV2;SDHB;RPS3;TOMM20;L2HGDH;CYP27B1;COA3;UQCRC2;UQCC1;MFF;TIMM9;MRPL2;CYC1;SLC25A11;MRPL18;GADD45GIP1;SDHC;UQCRH;HMOX1;SLC25A1;HAX1;NDUFS4;MRPL34;MRPS14;MRPL20;COX18;OGDH;FECH;TMEM126B;NDUFAF1;ACSL3;NDUFAF4;COA1;MRPL46;MTX1;UBA52;MRPS17;MRPL40;ETFDH;MRPL44;NDUFA7;COX6B1;SLC25A33;TIMM22;COX7B;NDUFC2;BAK1;TMEM223;NDUFB10;MRPL27;MRPL17;TIMM10;MRPL3;TMEM186;MRPL22;MRPL41;MRPL36;MRPS22;NDUFA12;UCP2;COQ5;BNIP1;MRPL43;ABCB7;AIFM2;FAM210B;SLC39A9;PMPCA;APOO;ALDH18A1;TIMM44;COASY;SLC25A15;COX15;NDUFA13;SCO1;SMIM20;TUFM;MRPS34;CKMT1A;AIFM3;SFXN2;ACSL1;MRS2;NDUFAB1;TIMM10B;TIMM17A;MRPS16;PGAM5;SMDT1;TOMM34;COX5B;MFN2;NDUFB3;AGK;MRPL10;NDUFV3;TIMM17B;GHITM;SLC41A3;DNM1L;VDAC2;HSPD1;DAP3;MRPL35;COQ6;MRPL55;PTCD3;MRPL19;MRPS18B;NDUFB5;CPT2;IFI6;TMEM70;MRPL14;COQ4;UQCC2;MRPS23;MRPS18A
+prerank,Mitochondrial Ribosome (GO:0005761),0.7286904109458664,2.235579976469376,1.000000e-03,4.894463e-03,1.700000e-02,15/20,18.08%,MRPL48;MRPL37;MRPL49;MRPL9;MRPS12;MRPL39;MRPL51;MRPL18;MRPL34;MRPS14;MRPL20;MRPL40;NDUFA7;MRPS22;MRPL43
+prerank,Cytosolic Small Ribosomal Subunit (GO:0022627),0.6252630506732939,2.2122168784226175,1.000000e-03,5.366735e-03,2.100000e-02,20/34,16.49%,RPS15;RPS27A;MRPS12;RPS14;RPS15A;RPS29;RPS6;RPS16;RPSA;EIF2S1;RPS25;RPS28;RPS3;RPS5;RPS13;RPS26;RPS8;UBA52;RPS4X;RPS7
+prerank,Small Ribosomal Subunit (GO:0015935),0.6157687194967337,2.195338831063466,1.000000e-03,5.520071e-03,2.400000e-02,20/35,16.49%,RPS15;RPS27A;MRPS12;RPS14;RPS15A;RPS29;RPS6;RPS16;RPSA;EIF2S1;RPS25;RPS28;RPS3;RPS5;RPS13;RPS26;RPS8;UBA52;RPS4X;RPS7
+prerank,Respiratory Chain Complex I (GO:0045271),0.6037903887212377,2.1849771563565734,1.000000e-03,4.579614e-03,2.600000e-02,24/39,24.27%,NDUFS7;NDUFB9;NDUFS8;NDUFA6;NDUFB11;NDUFA10;NDUFB4;NDUFC1;NDUFA4;NDUFA3;NDUFS3;NDUFA9;NDUFV2;NDUFS2;NDUFS4;NDUFAF1;NDUFA7;NDUFC2;NDUFB10;NDUFA12;NDUFA13;NDUFAB1;NDUFB3;NDUFV3
+prerank,Mitochondrial Respiratory Chain Complex I (GO:0005747),0.6037903887212377,2.1849771563565734,1.000000e-03,4.579614e-03,2.600000e-02,24/39,24.27%,NDUFS7;NDUFB9;NDUFS8;NDUFA6;NDUFB11;NDUFA10;NDUFB4;NDUFC1;NDUFA4;NDUFA3;NDUFS3;NDUFA9;NDUFV2;NDUFS2;NDUFS4;NDUFAF1;NDUFA7;NDUFC2;NDUFB10;NDUFA12;NDUFA13;NDUFAB1;NDUFB3;NDUFV3
+prerank,U4/U6 X U5 tri-snRNP Complex (GO:0046540),0.6342335947328425,2.183578037643126,1.000000e-03,3.746957e-03,2.600000e-02,25/32,32.16%,SNRNP40;USP39;SNRPD3;PRPF4;LSM3;LSM2;LSM4;SNRPB;SNRPD1;TXNL4B;RBM42;TXNL4A;SNRPD2;LSM7;SNRPG;SNRPF;EFTUD2;PRPF31;SNRNP27;ZMAT2;PRPF8;PPIH;DDX23;LSM5;SNRPA
+prerank,Spliceosomal tri-snRNP Complex (GO:0097526),0.6342335947328425,2.183578037643126,1.000000e-03,3.746957e-03,2.600000e-02,25/32,32.16%,SNRNP40;USP39;SNRPD3;PRPF4;LSM3;LSM2;LSM4;SNRPB;SNRPD1;TXNL4B;RBM42;TXNL4A;SNRPD2;LSM7;SNRPG;SNRPF;EFTUD2;PRPF31;SNRNP27;ZMAT2;PRPF8;PPIH;DDX23;LSM5;SNRPA
+prerank,Small-Subunit Processome (GO:0032040),0.5426123168885907,2.159485953367739,1.000000e-03,3.971384e-03,3.000000e-02,27/58,21.82%,UTP14A;RPS27A;PRKDC;NOP14;MRPS12;RPS14;RPS15A;NOP56;RPS6;NOL10;RPS16;RPS28;RPS5;DNTTIP2;RPS13;RPS8;XRCC5;RPS4X;NGDN;DIMT1;RPS7;EMG1;PNO1;FBL;UTP23;EXOSC10;RPS3A
+prerank,Mitochondrial Intermembrane Space (GO:0005758),0.5649599863550661,2.103518197914264,1.000000e-03,6.737317e-03,5.200000e-02,26/47,22.40%,ARL2;ARL2BP;TIMM23;TIMM13;CHCHD10;MICU1;CHCHD5;STOML2;COA6;CHCHD4;AIFM1;BLOC1S1;TIMM9;COA4;HAX1;THOP1;DIABLO;TIMM10;PRELID1;NLN;CHCHD2;AK2;HTRA2;TIMM10B;SOD1;CMC4
+prerank,Cytosolic Large Ribosomal Subunit (GO:0022625),0.5406312871045499,2.0082513048571347,3.992016e-03,1.245083e-02,1.010000e-01,26/47,28.51%,RPL39L;RPL23A;RPL26;RPL24;RPL14;RPL19;RPL13A;RPL21;RPL28;RPL10A;UBA52;RPL18A;RPL5;RPL27;RPL27A;RPL7A;RPL32;RPL26L1;RPL12;RPL36AL;RPL4;RPL6;RPL35A;RPL13;RPLP2;RPL36
+prerank,Large Ribosomal Subunit (GO:0015934),0.5406312871045499,2.0082513048571347,3.992016e-03,1.245083e-02,1.010000e-01,26/47,28.51%,RPL39L;RPL23A;RPL26;RPL24;RPL14;RPL19;RPL13A;RPL21;RPL28;RPL10A;UBA52;RPL18A;RPL5;RPL27;RPL27A;RPL7A;RPL32;RPL26L1;RPL12;RPL36AL;RPL4;RPL6;RPL35A;RPL13;RPLP2;RPL36
+prerank,U2-type Precatalytic Spliceosome (GO:0071005),0.5264891401800277,1.985696309051434,1.996008e-03,1.328267e-02,1.100000e-01,25/47,27.07%,SNRPD3;PRPF4;LSM3;SNRPA1;LSM2;PRPF38A;LSM4;SF3A2;SNRPB;SNRPD1;MAGOHB;PHF5A;SMU1;TXNL4A;SNRPD2;LSM7;SNRPG;SF3A3;SNRPF;EFTUD2;SNRPB2;PRPF31;ZMAT2;SF3B5;PRPF8
+prerank,Organelle Envelope Lumen (GO:0031970),0.5237720061227141,1.980557144243209,1.000000e-03,1.280440e-02,1.120000e-01,27/50,22.40%,APP;ARL2;ARL2BP;TIMM23;TIMM13;CHCHD10;MICU1;CHCHD5;STOML2;COA6;CHCHD4;AIFM1;BLOC1S1;TIMM9;COA4;HAX1;THOP1;DIABLO;TIMM10;PRELID1;NLN;CHCHD2;AK2;HTRA2;TIMM10B;SOD1;CMC4
+prerank,Secretory Granule Lumen (GO:0034774),0.4155795687584162,1.9692813669630074,1.000000e-03,1.288016e-02,1.210000e-01,63/174,20.32%,IGF1;CNN2;GLA;APP;HSPA8;TIMP1;EEF2;XRCC6;COTL1;PNP;CFD;CCT8;CTSZ;VTI1B;OLA1;PPIA;PSMD1;PSMA5;TMSB4X;DYNLT1;GLB1;TRAPPC1;PSMD2;IMPDH2;PSMD6;GGH;GNS;GYG1;PRSS8;GDI2;HSP90AB1;GUSB;ILF2;CYFIP1;PSMC3;NIT2;PSMD3;PGAM1;IDH1;FUCA2;CTSD;PA2G4;APRT;ACLY;PSMB7;CSTB;XRCC5;CRISP3;GRN;ERP44;TXNDC5;EEF1A1;VCP;IMPDH1;PRDX6;PSMD14;COMMD9;NPC2;CANT1;FUCA1;PSMD13;PSMD7;FABP5
+prerank,Ribosome (GO:0005840),0.5134515100200578,1.9685167872448837,2.070393e-03,1.220226e-02,1.210000e-01,24/53,22.29%,MRPS7;MRPS12;RPS29;RPL24;RPL19;RPS25;RPL13A;RPS28;RPS3;RPS5;EIF3H;HSPA14;RPS13;RPS26;RPL10A;RPS4X;RPL18A;RPS7;RPL27;RPL7A;SRP68;RPL32;BTF3;RPL36AL
+prerank,Cytoplasmic Vesicle Lumen (GO:0060205),0.4688664885549173,1.9632629042023886,2.032520e-03,1.204295e-02,1.280000e-01,32/78,19.97%,HSPA8;EEF2;XRCC6;COTL1;PNP;CFD;CCT8;PPIA;PSMA5;DYNLT1;PSMD2;IMPDH2;PSMD6;GYG1;GDI2;HSP90AB1;CYFIP1;PSMC3;PSMD3;PGAM1;IDH1;APRT;PSMB7;CSTB;XRCC5;EEF1A1;VCP;IMPDH1;PSMD14;COMMD9;PSMD13;PSMD7
+prerank,Ficolin-1-Rich Granule Lumen (GO:1904813),0.44955321897207534,1.9450057297994845,2.032520e-03,1.324817e-02,1.470000e-01,41/98,19.97%,HSPA8;EEF2;XRCC6;COTL1;PNP;CFD;CCT8;CTSZ;PPIA;PGM1;PSMA5;CST3;DYNLT1;GLB1;PSMD2;IMPDH2;PSMD6;GNS;CTSB;GYG1;HSP90AB1;GUSB;ILF2;PSMC3;PSMD3;PGAM1;IDH1;APEH;CTSD;ACLY;PSMB7;ASAH1;CSTB;EEF1A1;VCP;IMPDH1;PSMD14;COMMD9;CANT1;PSMD13;PSMD7
+prerank,Intracellular Organelle Lumen (GO:0070013),0.36038600601423515,1.9277456142613247,1.000000e-03,1.434382e-02,1.620000e-01,184/491,22.56%,CNN2;APP;NDUFS7;HSPA8;TIMP1;C1QBP;ARG2;EEF2;XRCC6;BDH1;ARL2;COTL1;BOLA3;GLUD1;PNP;CFD;ARL2BP;CCT8;CTSZ;GOT2;HYKK;FH;MMP14;PPIA;ECHS1;TXNDC16;NDUFS8;MANF;PGM1;HADHA;CCNB1;ACO2;PSMA5;CST3;PDIA6;ERAP2;POLDIP2;POLRMT;DYNLT1;YARS2;MDH2;TSPAN33;GLB1;BCAT2;ALDH6A1;TST;SUCLG1;FASTKD2;CALU;MMAB;FSTL1;LIPT2;PDSS2;APLP2;TOR1A;PYCR1;ALDH4A1;TK1;PSMD2;IMPDH2;ISCU;PDSS1;PSMD6;MUC13;GPX1;TXN2;GGH;PPA2;GNS;OXA1L;CTSB;TXNDC12;GYG1;HSPA9;PITRM1;DGUOK;ETHE1;DNAJA3;GSTZ1;HSP90AB1;NDUFS3;GPX7;ALDH1B1;CALR;NDUFA9;FMOD;GUSB;ILF2;DARS2;NUCB1;CYFIP1;PSMC3;NIT2;PSMD3;MTHFD1L;CRTAP;PCCB;PGAM1;IDH1;GCDH;RPS3;APEH;BLOC1S1;MPST;LARS2;FUCA2;CTSD;ERP29;TOR2A;PTCD1;GADD45GIP1;CANX;TFB2M;SUPV3L1;IDH3A;ACLY;NDUFS2;CLPP;MRRF;MCCC2;OGDH;FECH;PSMB7;ISCA2;ASAH1;HSP90B1;NSUN4;CSTB;CRISP3;ERP44;HMGCS2;HMGCL;JMJD8;ETFDH;TXNDC5;EEF1A1;VCP;IDH3G;ACAA2;HSD17B10;IMPDH1;GOLM1;SUMF2;BCKDK;MGAT4A;PCSK6;COQ5;PSMD14;COMMD9;TOR1B;SDF4;ABHD10;PYCR2;CANT1;ELAC2;GFM2;CS;ACOT2;GSTK1;PSMD13;ME2;TIMM44;COASY;PSMD7;ABCE1;PDIA3;NUDT2;LONP1;PHYKPL;HYOU1;SUCLA2;PPIB;TRMT5;TEFM;MCAT;LYRM4;NDUFAB1;ALDOC;PRDX3;F8;SOD1;NMNAT3;DNAJB11;HIBADH
+prerank,Precatalytic Spliceosome (GO:0071011),0.5065915545086056,1.9178343852498745,3.952569e-03,1.450419e-02,1.680000e-01,25/48,27.07%,SNRPD3;PRPF4;LSM3;SNRPA1;LSM2;PRPF38A;LSM4;SF3A2;SNRPB;SNRPD1;MAGOHB;PHF5A;SMU1;TXNL4A;SNRPD2;LSM7;SNRPG;SF3A3;SNRPF;EFTUD2;SNRPB2;PRPF31;ZMAT2;SF3B5;PRPF8
+prerank,Ficolin-1-Rich Granule (GO:0101002),0.4223945212096863,1.8946821767814834,1.000000e-03,1.567087e-02,1.890000e-01,49/124,19.97%,HSPA8;EEF2;XRCC6;COTL1;PNP;CFD;CCT8;CTSZ;RAC1;PPIA;RHOA;PGM1;PSMA5;CST3;LAMTOR1;DYNLT1;GLB1;PSMD2;IMPDH2;PSMD6;GNS;CTSB;GYG1;HSP90AB1;GUSB;ILF2;PSMC3;PSMD3;PGAM1;IDH1;APEH;DYNLL1;CTSD;SERPINB6;TMEM179B;ACLY;PSMB7;ASAH1;CSTB;SLC11A1;PRCP;EEF1A1;VCP;IMPDH1;PSMD14;COMMD9;CANT1;PSMD13;PSMD7
+prerank,Mitochondrial Outer Membrane Translocase Complex (GO:0005742),0.6619390403458671,1.8466540519890693,9.842520e-03,2.035066e-02,2.430000e-01,8/15,14.52%,TOMM5;CHCHD3;TOMM22;IMMT;TOMM40;HSPA9;TOMM20;MTX1
+prerank,U2 snRNP (GO:0005686),0.5720189698048442,1.8289932863281126,3.759398e-03,2.169812e-02,2.650000e-01,12/22,21.03%,SNRPD3;SNRPA1;DDX46;SF3A2;SNRPB;SNRPD1;PHF5A;SNRPD2;SNRPG;SF3A3;SNRPF;SNRPB2
+prerank,Azurophil Granule Lumen (GO:0035578),0.4719270678708832,1.8262468672504333,3.937008e-03,2.108531e-02,2.660000e-01,25/52,26.65%,GLA;CCT8;PSMD1;GLB1;TRAPPC1;GGH;GNS;PRSS8;GDI2;GUSB;FUCA2;PA2G4;GRN;TXNDC5;VCP;IMPDH1;PRDX6;NPC2;FUCA1;FABP5;MAN2B1;CREG1;FTL;TUBB4B;ANXA2
+prerank,Vacuolar Lumen (GO:0005775),0.42426276957563613,1.798582948011545,1.000000e-03,2.387430e-02,3.110000e-01,38/87,26.65%,IFI30;GLA;HSPA8;NAAA;CCT8;PSMD1;GLB1;TRAPPC1;GGH;GNS;GYG1;PRSS8;GDI2;FMOD;GUSB;SMPD1;FUCA2;CTSD;PA2G4;ACLY;ASAH1;GRN;PPT1;TXNDC5;VCP;IMPDH1;PRDX6;NPC2;LGMN;FUCA1;FABP5;CHID1;MAN2B1;CREG1;FTL;CTSF;TUBB4B;ANXA2
+prerank,U5 snRNP (GO:0005682),0.6028980917936227,1.7941132825772983,1.556420e-02,2.380610e-02,3.180000e-01,9/17,19.17%,SNRNP40;SNRPD3;SNRPB;SNRPD1;TXNL4B;TXNL4A;SNRPD2;SNRPG;SNRPF
+prerank,PRC1 Complex (GO:0035102),-0.6178079173046378,-1.7586489273000205,5.988024e-03,2.482268e-01,2.600000e-01,8/15,21.71%,CBX7;CBX8;CBX4;PHC3;CBX2;PCGF6;CBX6;PHC1
+prerank,Mitochondrial Envelope (GO:0005740),0.4013968745693792,1.75748507692641,1.000000e-03,2.790702e-02,3.760000e-01,42/107,22.40%,ARL2;ARL2BP;TIMM23;TIMM13;CHCHD10;NDUFA6;MICU1;CHCHD5;STOML2;TMBIM6;COA6;CHCHD4;OXA1L;AIFM1;NDUFS3;NDUFA9;ABCB6;SDHB;BLOC1S1;MFF;TIMM9;COA4;HAX1;OGDH;THOP1;NDUFAF4;ETFDH;SLC25A33;DIABLO;TIMM10;BNIP1;PRELID1;SLC39A9;NLN;NDUFA13;CHCHD2;AK2;HTRA2;NDUFAB1;TIMM10B;SOD1;CMC4
+prerank,Lysosomal Lumen (GO:0043202),0.46280618444817934,1.745473002963429,7.968127e-03,2.895960e-02,3.980000e-01,18/46,18.91%,IFI30;GLA;HSPA8;NAAA;GLB1;GNS;CTSB;GYG1;FMOD;GUSB;SMPD1;CTSD;ASAH1;PPT1;TXNDC5;NPC2;LGMN;FUCA1
+prerank,U2-type Catalytic Step 2 Spliceosome (GO:0071007),0.509422352926674,1.7156209701650516,1.000000e-03,3.292492e-02,4.490000e-01,14/29,23.99%,PPIL1;SNRNP40;SNRPD3;CWC15;SNRPA1;SNRPB;SNRPD1;BUD31;SNRPD2;SNRPG;SNRPF;EFTUD2;SNRPB2;SNW1
+prerank,Azurophil Granule (GO:0042582),0.3938444329289039,1.6964594374534372,4.032258e-03,3.590834e-02,4.890000e-01,38/98,26.65%,GLA;CCT8;PSMD1;LAMTOR1;B4GALT1;GLB1;TRAPPC1;MGST1;GGH;GNS;PRSS8;GDI2;GUSB;CPNE3;FUCA2;PA2G4;TMEM179B;ACLY;GRN;RAB5C;TXNDC5;PRCP;VCP;NDUFC2;IMPDH1;PRDX6;NPC2;DDOST;FUCA1;FABP5;PIGR;SURF4;LPCAT1;MAN2B1;CREG1;FTL;TUBB4B;ANXA2
+prerank,RNA Polymerase III Complex (GO:0005666),0.6141295208185373,1.692381603029425,2.254098e-02,3.591293e-02,4.980000e-01,7/15,20.26%,POLR2E;POLR2L;POLR3H;POLR3K;POLR2F;POLR2H;POLR1C
+prerank,Intermediate Filament (GO:0005882),-0.5324300253471904,-1.6910695502877529,2.235772e-02,2.224874e-01,4.040000e-01,10/22,23.95%,EPPK1;PLEC;PNN;EVPL;CLIP1;NES;TCHP;KRT10;DST;SYNM
+prerank,Rough Endoplasmic Reticulum (GO:0005791),0.5606127109140057,1.6841432045829579,2.000000e-02,3.661647e-02,5.190000e-01,5/18,12.92%,SFTPA2;RANGRF;PSMD2;TMEM97;HM13
+prerank,Polysomal Ribosome (GO:0042788),0.5089668692505442,1.6809583762383067,1.771654e-02,3.610024e-02,5.260000e-01,14/27,28.82%,RPS29;RPL24;RPL19;RPS28;EIF3H;RPS26;RPL10A;RPL18A;RPL7A;RPL32;RPL36AL;RPL6;RPL36;RPS21
+prerank,Anaphase-Promoting Complex (GO:0005680),0.5454435628164853,1.6614842305750979,1.659751e-02,4.010257e-02,5.780000e-01,8/18,15.99%,UBE2C;ANAPC5;ANAPC13;FZR1;CDC20;ANAPC15;ANAPC7;ANAPC10
+prerank,Tertiary Granule Lumen (GO:1904724),0.4930401960432504,1.6586406309037418,2.131783e-02,3.999630e-02,5.890000e-01,12/29,14.33%,CNN2;PGM1;CST3;GGH;ILF2;CYFIP1;NIT2;IDH1;CTSD;ASAH1;CSTB;CRISP3
+prerank,Condensed Nuclear Chromosome (GO:0000794),0.528075065727392,1.6565282230505387,1.897533e-02,3.943312e-02,5.920000e-01,6/22,9.84%,NCAPH;TUBG1;LRPPRC;RCC1;NCAPD2;NCAPG
+prerank,Platelet Alpha Granule Lumen (GO:0031093),0.4971172284082793,1.6431857614728815,1.635992e-02,4.153853e-02,6.290000e-01,7/27,4.20%,IGF1;APP;TIMP1;CFD;VTI1B;OLA1;TMSB4X
+prerank,Adherens Junction (GO:0005912),-0.3875708022420111,-1.6335448510430866,1.239669e-02,2.449359e-01,5.660000e-01,30/79,22.57%,SHROOM1;STXBP6;VEGFA;CXADR;NOTCH1;SMAD7;DLL1;CNN3;TNKS1BP1;BMPR2;DLG5;PDLIM7;BAIAP2L1;CAMSAP3;LIN7B;MAGI1;CTNND1;ILF3;KLHL24;FRS2;ZYX;SDCBP;AHI1;TMOD3;CCDC85B;LIN7C;ARVCF;TJP1;FRMD4B;APC
+prerank,Microbody Lumen (GO:0031907),0.4663520150904434,1.6296324069112733,1.359223e-02,4.370056e-02,6.620000e-01,19/32,32.21%,IDE;GRHPR;AMACR;ECH1;HSD17B4;IDH1;HMGCL;ACOT2;GSTK1;HACL1;ACOX3;PHYH;LONP2;ACAA1;ACOT8;DHRS4;GNPAT;NUDT19;ECI2
+prerank,Peroxisomal Matrix (GO:0005782),0.4663520150904434,1.6296324069112733,1.359223e-02,4.370056e-02,6.620000e-01,19/32,32.21%,IDE;GRHPR;AMACR;ECH1;HSD17B4;IDH1;HMGCL;ACOT2;GSTK1;HACL1;ACOX3;PHYH;LONP2;ACAA1;ACOT8;DHRS4;GNPAT;NUDT19;ECI2
+prerank,U12-type Spliceosomal Complex (GO:0005689),0.531006771142227,1.6296200657155773,2.952756e-02,4.268427e-02,6.620000e-01,11/20,25.67%,SNRPD3;SNRNP25;SNRPB;SNRPD1;PHF5A;SNRPD2;LSM7;SNRPG;SNRPF;ZCRB1;SF3B5
+prerank,Histone Acetyltransferase Complex (GO:0000123),-0.5113804935307981,-1.6276917608036068,1.072961e-02,1.909301e-01,5.840000e-01,12/22,26.85%,KANSL1;CREBBP;OGT;EP300;KAT2A;HCFC1;KAT2B;SUPT20H;KAT7;BRPF1;KANSL3;BRPF3
+prerank,Collagen-Containing Extracellular Matrix (GO:0062023),-0.3809440697958896,-1.616062801371626,1.956947e-03,1.667069e-01,6.130000e-01,14/81,3.72%,COL7A1;S100A4;COL18A1;LTBP4;MATN2;ANGPTL4;GDF15;LTBP1;ADAMTS1;COL6A1;COL6A2;MST1;S100A10;LAMA5
+prerank,Endoplasmic Reticulum Membrane (GO:0005789),0.3047750701885403,1.6148843691313368,1.000000e-03,4.604659e-02,6.970000e-01,195/489,30.93%,MBOAT2;SFTPA2;GRIN3A;UGT2B15;PON1;PTDSS1;HSD17B7;PGAP2;ALG8;DAD1;RNF121;COPZ2;RPS27A;MPDU1;CDS2;RAC1;VTI1B;SOAT1;RHOA;ELOVL5;DGAT2;PDIA6;BCAP31;ALG3;DHCR24;TMX2;JAGN1;UBB;DERL3;CYB5A;EPHX1;ALG1;TECR;GLB1;RAB1B;DOLPP1;MSMO1;RHOG;HMGCR;GOSR2;YIF1A;CLGN;TMBIM6;EMC6;TMED2;CALU;COPZ1;TOR1A;OST4;ELOVL6;MGST1;PSMD2;KDELR1;NSDHL;HMOX2;SEC13;CYP2U1;LTC4S;ALG5;GJB1;THADA;ALG14;NCLN;SLC35B1;CALR;MMGT1;ABCB6;SEC11A;SPCS1;COPE;PREB;EXT2;TUSC3;STIM1;VAPB;REEP4;CERS4;CANX;G6PC3;HM13;HMOX1;PIGC;DHCR7;BSCL2;HSP90B1;ACSL3;ALG12;UBA52;ERP44;PIGV;VCP;RDH11;EMC3;CCDC47;CLPTM1L;DEGS1;ATL2;PLOD1;RETSAT;COPG2;SRPRB;INSIG1;BNIP1;COPG1;STX5;DPM1;LBR;DDRGK1;AHCYL1;FDFT1;DDOST;DERL2;RPN2;ATP2A1;APOO;TMEM147;FADS1;TMEM258;CEPT1;COPB2;TBC1D20;WDR83OS;CTDNEP1;CYP51A1;RNF185;EMC10;GRAMD1A;TYRO3;HTRA2;UBE2J2;ACSL1;TMED10;ELOVL1;SURF4;GPAA1;ABHD12;LPCAT1;TMCO1;GALNT2;PLP2;CDS1;JPH1;OSTC;COPB1;KDELR2;CLN3;DNM1L;HSPA5;VMP1;ATG13;TEX264;DGAT1;SEC31A;LMAN2;SAR1B;DPAGT1;POR;HSD17B12;TMEM170A;NCEH1;SEC11C;EMC7;UBE2J1;CDK1;EXT1;VKORC1L1;ELOVL4;LPCAT3;CERS6;ANXA7;CYB5R1;OSBP;PTDSS2;TM7SF2;ARV1;EMC4;PIGP;GNAI3;ATL3;USE1;CDIPT;SLC27A4;TMEM129;SQLE;CYP2J2;STARD3NL;DHRS4;SLC39A7;PCYT2;VKORC1;CNIH4;SPPL3;MGST2;SPTLC1;ALG6
+prerank,Vesicle Coat (GO:0030120),0.47256465584504126,1.6103657079619902,2.819549e-02,4.611099e-02,7.020000e-01,16/32,28.38%,COPZ2;PEF1;CLTB;COPZ1;SEC13;EPN1;COPE;CLTA;SEC23B;COPG2;COPG1;COPB2;COPB1;SEC31A;SAR1B;SAR1A
+prerank,Intermediate Filament Cytoskeleton (GO:0045111),-0.4279084633842915,-1.5867462364055651,1.670146e-02,1.720663e-01,6.930000e-01,20/42,26.60%,EPPK1;PLEC;PNN;STON1;EVPL;SMARCA2;SYNE2;DDX60;CLIP1;ZNF131;NES;PJA2;KRT10;DST;MDN1;SYNM;PKN2;HOXA13;HSDL1;CTNS
+prerank,Platelet Alpha Granule (GO:0031091),0.4442755237251387,1.5675611568104217,3.571429e-02,5.854875e-02,7.970000e-01,9/36,6.80%,IGF1;APP;TIMP1;CD9;CFD;VTI1B;OLA1;TMSB4X;APLP2
+prerank,Peroxisome (GO:0005777),0.36018954176923407,1.5596075284758493,1.202405e-02,6.037235e-02,8.120000e-01,40/94,30.57%,MAP2K2;DHRS7B;IDE;MVK;GRHPR;AMACR;ECH1;HSD17B4;MPV17;HMGCR;MGST1;IMPDH2;TTC1;IDH1;MFF;PEX11B;HMGCL;MVD;IDI1;MGAT4A;SLC25A17;PEX11G;ACOT2;GSTK1;SOD1;HACL1;PEX14;ACOX3;PEX10;PHYH;LONP2;DNM1L;HSDL2;TMEM135;ACAA1;DECR2;ACOT8;USP30;DHRS4;GNPAT
+prerank,Condensed Chromosome (GO:0000793),0.411382339399209,1.4996316845550368,3.059273e-02,8.643127e-02,9.010000e-01,10/42,11.62%,NCAPH;TUBG1;SETMAR;CTCF;LRPPRC;RCC1;NCAPD2;BANF1;NCAPG;SMC6
+prerank,Apical Junction Complex (GO:0043296),-0.385171379330454,-1.4862568922775592,5.241935e-02,3.071605e-01,9.070000e-01,12/51,11.42%,SHROOM1;CXADR;EPPK1;WNK4;CGN;USP53;CLDN12;TGFBR1;MICALL2;CAMSAP3;CYTH1;PARD6B
+prerank,Vacuolar Proton-Transporting V-type ATPase Complex (GO:0016471),0.48596895006042623,1.455629307476458,6.237817e-02,1.112163e-01,9.490000e-01,10/18,31.39%,ATP6V0D1;ATP6V1B2;ATP6V1E1;ATP6V1C2;ATP6V1H;ATP6V0E2;ATP6V1F;ATP6V1D;ATP6V0B;TMEM199
+prerank,Cation Channel Complex (GO:0034703),-0.46780598391401695,-1.4468115596934117,8.423326e-02,3.507438e-01,9.630000e-01,4/20,1.25%,SCNN1G;TRPC1;PKD1;SCNN1B
+prerank,Bicellular Tight Junction (GO:0005923),-0.40053195038831485,-1.4447398713200528,5.231388e-02,3.163952e-01,9.660000e-01,10/39,11.42%,CXADR;EPPK1;WNK4;CGN;USP53;CLDN12;TGFBR1;MICALL2;CYTH1;PARD6B
+prerank,Aggresome (GO:0016235),-0.44620663086943385,-1.4316883860496028,7.459677e-02,3.092257e-01,9.750000e-01,5/21,11.21%,HSPA1A;TRIM66;HSPA1B;HDAC6;HOXC9
+prerank,Spindle Microtubule (GO:0005876),0.36209968312007396,1.401297174464455,5.714286e-02,1.502600e-01,9.800000e-01,18/58,19.89%,PARP4;TUBG1;AURKA;SKA3;CALM3;PLK1;AURKB;CALM2;RMDN1;PSRC1;CHMP6;HAUS8;SKA1;KIF18A;KIF4A;HAUS4;CHMP2A;CLTC
+prerank,U2-type Spliceosomal Complex (GO:0005684),0.33222382075395046,1.3998322561242782,4.752475e-02,1.483492e-01,9.810000e-01,31/81,25.67%,PPIL1;SNRNP40;SNRPD3;PRPF4;LSM3;CWC15;SNRPA1;EIF4A3;LSM2;PRPF38A;LSM4;SF3A2;SNRPB;SNRPD1;MAGOHB;PHF5A;BUD31;SMU1;TXNL4A;SNRPD2;LSM7;SNRPG;SF3A3;SNRPF;EFTUD2;SNRPB2;PRPF31;U2AF2;SNW1;ZMAT2;SF3B5
+prerank,Cell-Cell Junction (GO:0005911),-0.29842138801211515,-1.3996987328890436,1.988072e-02,3.448378e-01,9.850000e-01,35/156,14.34%,SHROOM1;STXBP6;AHNAK;VEGFA;CXADR;KAZN;NOTCH1;SMAD7;DLL1;PNN;TNFRSF25;CNN3;TNKS1BP1;USP53;BAIAP2L2;CADM1;BMPR2;MICALL2;DLG5;PDLIM7;AQP3;BAIAP2L1;NPHP4;VSIG10;LIN7B;FLCN;PARD6B;MAGI1;CTNND1;MAPK15;ILF3;PTK7;KLHL24;PTPRU;FRS2
+prerank,Spliceosomal snRNP Complex (GO:0097525),0.3649332077199841,1.3983563407188946,5.846774e-02,1.466605e-01,9.820000e-01,21/51,22.44%,SNRNP40;SNRPD3;PRPF4;LSM3;SNRPA1;LSM2;LSM4;DDX46;SF3A2;SNRPB;SNRPD1;TXNL4B;PHF5A;TXNL4A;SNRPD2;LSM7;SNRPG;SF3A3;SNRPF;SNRPB2;PRPF31
+prerank,Filopodium (GO:0030175),-0.42104123795109366,-1.3968723121567723,7.692308e-02,3.235646e-01,9.850000e-01,8/28,15.04%,CXADR;SYNE2;PPP1R9B;FMR1;SPATA13;TWF2;FGF13;PODXL
+prerank,Tight Junction (GO:0070160),-0.37234586625807453,-1.387945926309083,7.216495e-02,3.153283e-01,9.880000e-01,11/45,11.42%,CXADR;EPPK1;WNK4;CGN;USP53;CLDN12;TGFBR1;MICALL2;SIPA1L3;CYTH1;PARD6B
+prerank,Cul3-RING Ubiquitin Ligase Complex (GO:0031463),-0.408790880432047,-1.3797771680622963,7.312253e-02,3.102835e-01,9.890000e-01,15/28,30.82%,ENC1;KCTD2;GLMN;KLHL42;KLHL24;LZTR1;KLHL12;KLHL21;ZSWIM8;KCTD13;KLHL2;KLHL9;KBTBD7;KLHL7;KEAP1
+prerank,Focal Adhesion (GO:0005925),0.2796801295480068,1.3770161754985084,9.960159e-03,1.642586e-01,9.920000e-01,74/267,20.86%,CNN2;EFNB2;BSG;MAP2K2;HSPA8;MME;TGM2;CD9;SLC9A3R2;ARL2;CAPN5;RPS15;RAC1;MMP14;PPIA;RHOA;MPZL1;FGFR3;ANXA6;TMEM98;TPM4;RPS14;PFN1;RHOG;NPM1;CAPN2;ARF1;RPS29;ARPC5L;YWHAE;CFL1;RPS16;PARVB;DCAF6;RPL19;HSPA9;PRSS8;GDI2;CALR;RPL13A;CYFIP1;TLE2;ARPC2;RPS3;RPS5;HMGA1;CPNE3;PALLD;DYNLL1;RPS13;YWHAB;RPS8;RPL10A;FERMT2;HSP90B1;GNA12;CD81;RPS4X;RPL5;RPS7;ACTR3;YWHAQ;RPL27;CORO1B;ARPC3;PDLIM1;ANXA5;RPL7A;SRP68;CLTC;PDIA3;RPL12;HYOU1;PPIB
+prerank,Nuclear Chromosome (GO:0000228),0.32648924631068554,1.368139776960861,5.304519e-02,1.706383e-01,9.930000e-01,17/79,15.30%,NCAPH;TUBG1;CDC45;BIRC5;GINS2;ZNHIT1;LRPPRC;RCC1;NCAPD2;GINS3;MCM6;NCAPG;RUVBL1;MCRS1;MCM2;MCM4;MCM5
+prerank,Motile Cilium (GO:0031514),-0.42454042143870657,-1.3666670413342505,9.940358e-02,3.150788e-01,9.920000e-01,6/23,10.59%,DNAH5;PKD1;DAAM1;DNAH2;CAMSAP3;GAS8
+prerank,Tertiary Granule (GO:0070820),0.3329840594172677,1.3617613256678411,7.186858e-02,1.735544e-01,9.950000e-01,22/78,18.49%,CNN2;RAC1;RHOA;PGM1;CST3;LAMTOR1;GGH;ILF2;CYFIP1;NIT2;IDH1;DYNLL1;CTSD;SERPINB6;TMEM179B;ASAH1;CSTB;CRISP3;SLC11A1;PRCP;CD47;CANT1
+prerank,Cell-Substrate Junction (GO:0030055),0.2738877677302243,1.3507450909852923,1.584158e-02,1.824843e-01,9.960000e-01,74/269,20.86%,CNN2;EFNB2;BSG;MAP2K2;HSPA8;MME;TGM2;CD9;SLC9A3R2;ARL2;CAPN5;RPS15;RAC1;MMP14;PPIA;RHOA;MPZL1;FGFR3;ANXA6;TMEM98;TPM4;RPS14;PFN1;RHOG;NPM1;CAPN2;ARF1;RPS29;ARPC5L;YWHAE;CFL1;RPS16;PARVB;DCAF6;RPL19;HSPA9;PRSS8;GDI2;CALR;RPL13A;CYFIP1;TLE2;ARPC2;RPS3;RPS5;HMGA1;CPNE3;PALLD;DYNLL1;RPS13;YWHAB;RPS8;RPL10A;FERMT2;HSP90B1;GNA12;CD81;RPS4X;RPL5;RPS7;ACTR3;YWHAQ;RPL27;CORO1B;ARPC3;PDLIM1;ANXA5;RPL7A;SRP68;CLTC;PDIA3;RPL12;HYOU1;PPIB
+prerank,Organelle Outer Membrane (GO:0031968),0.2917833500975532,1.2961414506305373,5.030181e-02,2.451073e-01,1.000000e+00,40/118,23.81%,MAOA;VDAC3;RPS27A;TOMM5;PHB2;TOMM22;MTCH2;UBB;CYB5A;RAB32;RHOD;TOMM40;BPHL;LTC4S;HINT2;CISD1;TOMM20;CYP27B1;MFF;HMOX1;HAX1;DHCR7;ACSL3;MTX1;UBA52;BAK1;TMEM53;RETSAT;BNIP1;AIFM2;FAM210B;COASY;TUFM;EMD;SFXN2;ACSL1;PGAM5;TOMM34;MFN2;AGK
+prerank,Mitochondrial Outer Membrane (GO:0005741),0.2926728780895978,1.2892098202555355,5.668016e-02,2.498530e-01,1.000000e+00,37/108,25.40%,MAOA;VDAC3;RPS27A;TOMM5;PHB2;TOMM22;MTCH2;UBB;CYB5A;RAB32;RHOD;TOMM40;BPHL;HINT2;CISD1;TOMM20;CYP27B1;MFF;HMOX1;HAX1;ACSL3;MTX1;UBA52;BAK1;BNIP1;AIFM2;FAM210B;COASY;TUFM;SFXN2;ACSL1;PGAM5;TOMM34;MFN2;AGK;DNM1L;VDAC2
+prerank,Chromosome (GO:0005694),0.28728972643559225,1.2777422058065184,7.561437e-02,2.610962e-01,1.000000e+00,41/117,29.17%,HSF2BP;BIRC5;SETMAR;CTCF;LLPH;CDCA5;RCC1;NCAPD2;BANF1;BRCA1;NCAPG;CDYL;DNTTIP2;SMC6;EBNA1BP2;FTSJ3;RAD51AP1;PRR19;PES1;BYSL;BRIX1;EMG1;FANCE;GTF2B;DDX18;PPP1R7;RAD51;RHNO1;DDX27;MLH1;TRIP13;RBM34;ZFX;PDS5A;SIRT2;RSL1D1;UTP6;RPF2;CENPE;NOL8;DNTTIP1
+prerank,Microbody Membrane (GO:0031903),0.336348700837928,1.275703614731237,1.259690e-01,2.550695e-01,1.000000e+00,8/47,8.98%,MAP2K2;DHRS7B;HSD17B4;MPV17;HMGCR;MGST1;IMPDH2;TTC1
+prerank,Peroxisomal Membrane (GO:0005778),0.336348700837928,1.275703614731237,1.259690e-01,2.550695e-01,1.000000e+00,8/47,8.98%,MAP2K2;DHRS7B;HSD17B4;MPV17;HMGCR;MGST1;IMPDH2;TTC1
+prerank,Neuron Projection (GO:0043005),-0.26114975263030843,-1.2697367624221805,3.549061e-02,5.213556e-01,1.000000e+00,59/206,20.62%,SLC6A6;GABRA2;CPEB4;MAPK8IP3;CXADR;NCOA2;SSTR1;TNFRSF25;SACS;VAMP2;ZNF385A;IGSF9;PPP1R9B;PLK2;SEMA6A;CADM1;PRKAA2;INSR;PTGS1;TRAK1;FMR1;MICALL2;PTGDR2;MYO5A;RGS12;PTK2B;ANKS1A;ARHGEF7;GRIN1;HDAC6;ALCAM;BNIP3;UHMK1;FGF13;MAP9;RGS11;DYRK1A;SHANK2;PTK7;PRKAA1;HOMER3;NF1;MAP7;NMB;MLPH;GABRA4;PICK1;RAB5A;ZFYVE27;RAB39B;STX3;PRNP;SPG11;RBM3;CAMK2B;ZACN;CAMK2G;DVL1;RAB27A
+prerank,Endolysosome (GO:0036019),0.4338284476793719,1.2681743813949402,1.612903e-01,2.611349e-01,1.000000e+00,8/17,19.89%,AP2S1;CTSB;SMPD1;CLTA;LGMN;AP2A1;AP2M1;CLTC
+prerank,"Preribosome, Large Subunit Precursor (GO:0030687)",0.44078617216987676,1.2634791423743246,1.975560e-01,2.635323e-01,1.000000e+00,12/16,42.88%,EBNA1BP2;FTSJ3;PES1;MRTO4;NEDD4;EIF6;LAS1L;NSA2;ZNF622;NIP7;MAK16;WDR12
+prerank,Core Mediator Complex (GO:0070847),0.3929045387549354,1.262980922463669,1.652542e-01,2.601189e-01,1.000000e+00,8/23,16.05%,MED16;MED27;MED8;MED29;MED6;MED31;MED11;MED19
+prerank,Azurophil Granule Membrane (GO:0035577),0.34977094918786195,1.257781451435929,1.328125e-01,2.629931e-01,1.000000e+00,19/39,35.58%,LAMTOR1;B4GALT1;MGST1;CPNE3;TMEM179B;RAB5C;PRCP;NDUFC2;DDOST;PIGR;SURF4;LPCAT1;DNAJC13;NCSTN;LAMP1;PSAP;MAGT1;SNAP29;VAMP8
+prerank,Specific Granule Lumen (GO:0035580),0.3678289557710151,1.2538427183230876,1.485356e-01,2.646484e-01,1.000000e+00,9/30,14.59%,CNN2;CTSZ;GGH;ILF2;CYFIP1;NIT2;CTSD;CRISP3;ERP44
+prerank,Sarcoplasmic Reticulum (GO:0016529),-0.38105903514190387,-1.2398693281746525,1.798419e-01,5.821134e-01,1.000000e+00,6/25,9.31%,ITPR1;S100A1;FSD2;SYNE2;ITPR3;CCDC78
+prerank,Vesicle Membrane (GO:0012506),-0.3387771666768204,-1.2341853155467615,1.682975e-01,5.668551e-01,1.000000e+00,18/43,28.38%,SYNJ1;VOPP1;MYO5B;TMEM184A;BAIAP2L2;SLC30A1;DGKQ;VAMP5;C2CD5;MFSD10;APPBP2;CLCN3;HTT;SPIRE1;SPIRE2;PIKFYVE;RAB21;KIF1B
+prerank,Axon (GO:0030424),-0.2899134358241327,-1.2093201831577483,1.490683e-01,6.118820e-01,1.000000e+00,36/76,29.04%,MAPK8IP3;TNFRSF25;SACS;IGSF9;SEMA6A;PRKAA2;INSR;FMR1;HDAC6;ALCAM;UHMK1;FGF13;MAP9;DYRK1A;PTK7;PRKAA1;NF1;MAP7;RAB5A;ZFYVE27;SPG11;TAOK2;DIP2B;CD2AP;HTT;FXR1;KIF1A;ZC3H14;SPAST;RNF6;STAT1;ATP7A;SETX;KIF1B;IGHMBP2;DOCK7
+prerank,Cortical Actin Cytoskeleton (GO:0030864),-0.36459587430849666,-1.1947761661696252,2.100840e-01,6.266316e-01,1.000000e+00,3/26,3.14%,SHROOM1;SPTBN5;SPTBN1
+prerank,Microtubule (GO:0005874),0.26447240977910436,1.189397980734761,1.384016e-01,3.667387e-01,1.000000e+00,34/124,19.92%,PARP4;MID1;MAP2K2;TUBG1;CDK2AP2;CCT8;AURKA;TUBA1B;TUBA1C;KIF20B;SKA3;LRPPRC;CALM3;PLK1;CDK5;TCP1;BAG2;AURKB;CCT5;TUBB3;CALM2;TBCE;RMDN1;PSRC1;CCT4;CCT3;HAUS8;SKA1;KIF4A;KIF20A;KIF15;TCP11L1;TBCD;TUBG2
+prerank,Recycling Endosome (GO:0055037),-0.270861653051018,-1.1863466181923485,1.434783e-01,6.242273e-01,1.000000e+00,38/100,23.29%,SORL1;MYO5B;HLA-B;BAIAP3;HLA-E;MICALL2;ATG9B;LMTK2;MYO5A;GRIPAP1;RAB11FIP4;TPCN1;HLA-A;VPS16;TBC1D12;VIPAS39;SCAMP5;ULK1;ATP9A;SNX18;ZFYVE27;OPTN;PLA2G3;OCRL;LZTR1;STX6;FCHSD1;PACSIN2;TUBA1A;BOK;RAB11FIP3;TBC1D17;RAB8B;HLA-C;WASH4P;CLCN3;SLC11A2;AVL9
+prerank,Early Endosome Membrane (GO:0031901),-0.29028783844231176,-1.1658690774896907,1.942740e-01,6.613719e-01,1.000000e+00,22/63,22.63%,LDLRAD4;TMEM184A;HLA-B;BAIAP3;HLA-E;WDR91;TPCN1;HLA-A;LRP6;WDR81;ATP9A;TMEM30A;RAB5A;ZFYVE16;ZFYVE28;OCRL;MON2;GGA2;BOK;HLA-C;WASH4P;SNX21
+prerank,Golgi-associated Vesicle Membrane (GO:0030660),-0.41106432696986506,-1.1658671139066488,2.768595e-01,6.326166e-01,1.000000e+00,8/15,27.51%,PKD1;ZDHHC17;ITM2B;ZDHHC13;GPR89A;GOPC;GJA1;KDELR3
+prerank,Exocytic Vesicle Membrane (GO:0099501),-0.41191157917600923,-1.164368785048641,2.519841e-01,6.109882e-01,1.000000e+00,4/15,12.58%,GABRA2;VAMP2;SV2A;SEMA4C
+prerank,Extracellular Membrane-Bounded Organelle (GO:0065010),0.338955314989995,1.162014004967516,2.494845e-01,4.152717e-01,1.000000e+00,9/29,19.89%,ATP1B1;CD9;CBR1;ATP1A1;PCMT1;GNAI2;ARRDC1;SLC12A2;CLTC
+prerank,Dendrite (GO:0030425),-0.26024869451384935,-1.1564013985269432,1.793372e-01,6.107508e-01,1.000000e+00,28/115,16.14%,SLC6A6;GABRA2;CPEB4;MAPK8IP3;SACS;ZNF385A;PPP1R9B;PLK2;PRKAA2;INSR;TRAK1;FMR1;HIP1R;RGS12;PTK2B;GRIN1;HDAC6;BNIP3;UHMK1;FGF13;DYRK1A;PRKAA1;HOMER3;NF1;MLPH;GABRA4;RAB5A;ZFYVE27
+prerank,Spindle (GO:0005819),0.24915741596063215,1.1528606265948154,1.840491e-01,4.273041e-01,1.000000e+00,38/157,19.99%,PARP4;TUBG1;AURKA;ANAPC5;SAC3D1;SKA3;KNSTRN;JTB;FAM83D;CALM3;PLK1;CDC6;MAEA;CDC20;AURKB;TUBB3;CALM2;RMDN1;RPS3;PSRC1;CAPG;DYNLL1;ANAPC7;DLGAP5;TTK;RACGAP1;SKA1;TADA3;MMS19;KIF4A;TPX2;KIF20A;FBXO5;AGBL5;PKP4;CLTC;TUBG2;MAD2L1
+prerank,Cortical Cytoskeleton (GO:0030863),-0.3291633582467243,-1.1450714332949796,2.552301e-01,6.199974e-01,1.000000e+00,3/31,3.14%,SHROOM1;SPTBN5;SPTBN1
+prerank,Extracellular Vesicle (GO:1903561),0.3309272681625889,1.1403951941991815,2.577320e-01,4.461689e-01,1.000000e+00,9/30,19.89%,ATP1B1;CD9;CBR1;ATP1A1;PCMT1;GNAI2;ARRDC1;SLC12A2;CLTC
+prerank,Ficolin-1-Rich Granule Membrane (GO:0101003),0.35138391904318833,1.1395454743535651,2.707930e-01,4.414268e-01,1.000000e+00,8/26,15.41%,RAC1;RHOA;LAMTOR1;DYNLL1;SERPINB6;TMEM179B;SLC11A1;PRCP
+prerank,Transcription Factor TFIID Complex (GO:0005669),0.3326831229799009,1.1333747678879846,2.628337e-01,4.486412e-01,1.000000e+00,16/29,39.50%,GTF2E2;GTF2H5;TAF13;TAF12;GTF2B;GTF2E1;ERCC3;TAF10;GTF2F1;TAF5L;PAAF1;GTF2H4;TCEA1;TBP;GTF2A2;TAF8
+prerank,Intercalated Disc (GO:0014704),0.39259395718735685,1.1322378364518149,2.825203e-01,4.452479e-01,1.000000e+00,3/17,2.65%,ANK3;ATP1B1;RANGRF
+prerank,Coated Vesicle (GO:0030135),-0.27782512318771707,-1.1259945374921534,2.510288e-01,6.541027e-01,1.000000e+00,16/62,20.20%,COL7A1;DAB2;TNK2;VAMP2;TMED6;HIP1R;HIP1;FCHO2;CCDC115;GOLGA2;SNX18;OCRL;LMAN1;STX6;KLHL12;GGA2
+prerank,Cilium (GO:0005929),-0.25848382665634134,-1.1252665959843133,2.219917e-01,6.329834e-01,1.000000e+00,18/97,12.61%,DNAH5;PKD1;KIF7;ANKS3;CBL;RILPL1;MOK;FAM161A;TTLL7;DAAM1;PTCH1;DNAH2;NPHP4;CAMSAP3;GAS8;FLCN;SHANK2;NPHP3
+prerank,Vesicle (GO:0031982),0.24244425287665874,1.1172781441928494,2.109533e-01,4.715707e-01,1.000000e+00,33/133,18.38%,MVB12A;ATP1B1;PACRG;CD9;RPS27A;CBR1;VTI1B;PPIA;RHOA;TUBA1C;CST3;UBB;CALM3;APLP2;CFL1;ATP1A1;SLC9A3R1;GDI2;STX8;CALM2;RAB34;PCMT1;UBA52;CD81;MYO1F;RIPK2;TAGLN2;STX12;GAPDH;GNAI2;ARRDC1;STX5;SLC12A2
+prerank,Synaptic Vesicle Membrane (GO:0030672),-0.3863087413920072,-1.1171185199345828,2.981744e-01,6.355705e-01,1.000000e+00,4/16,12.58%,GABRA2;VAMP2;SV2A;SEMA4C
+prerank,Clathrin-Coated Endocytic Vesicle (GO:0045334),0.31507713564716544,1.1125056965794322,2.808765e-01,4.751235e-01,1.000000e+00,5/34,7.53%,SFTPA2;CD9;CLTB;AP2S1;LDLRAP1
+prerank,Recycling Endosome Membrane (GO:0055038),-0.28577204110025517,-1.1077057051168697,2.841880e-01,6.428510e-01,1.000000e+00,26/48,30.58%,HLA-B;BAIAP3;HLA-E;ATG9B;RAB11FIP4;TPCN1;HLA-A;SCAMP5;ATP9A;SNX18;ZFYVE27;OPTN;LZTR1;PACSIN2;BOK;RAB11FIP3;RAB8B;HLA-C;RAP2A;RAP2B;NDRG1;RAP2C;EHD1;ARF6;RAB17;RAB14
+prerank,H4/H2A Histone Acetyltransferase Complex (GO:0043189),-0.36281160669821877,-1.0975116799955982,3.203285e-01,6.317178e-01,1.000000e+00,5/19,16.00%,YEATS2;MBTD1;TRRAP;EP400;EPC1
+prerank,NuA4 Histone Acetyltransferase Complex (GO:0035267),-0.36281160669821877,-1.0975116799955982,3.203285e-01,6.317178e-01,1.000000e+00,5/19,16.00%,YEATS2;MBTD1;TRRAP;EP400;EPC1
+prerank,Cell-Cell Contact Zone (GO:0044291),-0.3228744435443396,-1.0924420345365609,3.248031e-01,6.272984e-01,1.000000e+00,6/28,11.27%,AHNAK;OBSL1;CXADR;BAIAP2L2;FGF13;FLCN
+prerank,Lytic Vacuole (GO:0000323),0.23089155880460907,1.0611608313885441,3.163065e-01,5.871491e-01,1.000000e+00,55/144,33.40%,IFI30;GLA;MFSD12;HSPA8;NAAA;CTSZ;LAMTOR1;USP5;TMEM97;CTSB;SMPD1;HYAL2;FUCA2;CTSD;OCIAD1;ASAH1;GRN;PPT1;SLC11A1;RPTOR;USP4;TOM1L1;NPC2;LGMN;VPS33A;RPS6KC1;FUCA1;CLTC;CPQ;ITM2C;SNX6;CHID1;MAN2B1;TMEM9;UVRAG;CLN3;RRAGA;CTSF;VAMP4;SORT1;CTSC;USE1;NEU1;TPP1;VPS26A;RAB7A;PCYOX1;CTSH;VPS35;VMA21;LAMP1;TIAL1;PSAP;CTSA;RNF167
+prerank,Cyclin-Dependent Protein Kinase Holoenzyme Complex (GO:0000307),0.3115344505992806,1.055590472953482,3.750000e-01,5.937923e-01,1.000000e+00,13/29,30.16%,CCNB1;CDK4;CDK5;CCNB2;CKS1B;MCM2;CKS2;CDK2;CCNE1;CCND3;CDK1;CCNA2;CCNI
+prerank,Microtubule Cytoskeleton (GO:0015630),0.21274739218289093,1.048986307913862,3.182711e-01,6.032376e-01,1.000000e+00,53/223,19.92%,MID1;MAP2K2;TUBG1;BIRC5;CDK2AP2;ARL2;CCT8;AURKA;TUBA1B;TUBA1C;ANAPC5;KIF20B;SAC3D1;CENPV;JTB;CDC42EP4;FAM83D;LRPPRC;PLK1;CDK5;MAEA;CDC20;TCP1;BAG2;AURKB;CCT5;PPP2R1A;TUBB3;TBCE;ACTR1A;PSRC1;CCT4;CCNB2;ANAPC7;CCT3;CDCA8;TTK;RACGAP1;GTSE1;SKA1;KIF18A;GAPDH;MMS19;TPX2;KIF20A;KIF15;FBXO5;TCP11L1;AGBL5;TBCD;CKAP5;CLTC;TUBG2
+prerank,Sarcolemma (GO:0042383),-0.33359074213967976,-1.0483679865382831,3.842975e-01,7.455101e-01,1.000000e+00,3/21,2.07%,SGCD;PLEC;AHNAK2
+prerank,Clathrin-Coated Vesicle Membrane (GO:0030665),0.29221321145571616,1.0465265391635523,3.496094e-01,6.022863e-01,1.000000e+00,10/36,19.89%,HSPA8;CD9;CLTB;AP2S1;LDLRAP1;EPN1;CLTA;AP2A1;AP2M1;CLTC
+prerank,Protein Serine/Threonine Phosphatase Complex (GO:0008287),0.34718282352258173,1.038011010039176,3.968566e-01,6.173463e-01,1.000000e+00,10/19,32.91%,PPP3CA;PPP2R2A;PPP2R1A;PPP4C;PPP3R1;PPP2R5A;PPP2R5C;PPP2R5D;PPP3CB;PPP2CA
+prerank,Actin-Based Cell Projection (GO:0098858),-0.29670278873192535,-1.0278290180102583,4.100000e-01,7.922102e-01,1.000000e+00,8/33,15.04%,CXADR;PPP1R9B;SPATA13;CD44;TWF2;FGF13;TGFB1;PODXL
+prerank,Actin Cytoskeleton (GO:0015629),-0.2115160265692907,-1.0245090988385985,3.943662e-01,7.811348e-01,1.000000e+00,35/184,15.46%,SHROOM1;ARSJ;AHNAK;SPTBN5;CNN3;APBB3;MYO5B;SPTBN1;CROCC;ABLIM3;LIMD2;PPP1R9B;ARHGAP32;WASF1;TSC1;SMTN;LPXN;ATP12A;MYO5A;PDLIM7;SVIL;ARHGAP33;BAIAP2L1;TWF2;SCNN1D;ASAP1;MYO6;KLHL17;ILF3;ABLIM1;CTTNBP2NL;MTSS1;ZYX;INTS6;MLPH
+prerank,Autophagosome (GO:0005776),-0.25246080590429976,-1.0234643138553552,4.175153e-01,7.634347e-01,1.000000e+00,17/66,19.05%,FYCO1;ATG9B;JMY;TBC1D25;PEG3;RAB24;TBC1D12;MAPK15;ENTPD4;ULK3;ULK1;GABARAPL1;WDR81;ATG14;CHMP2B;PIP4K2B;NBR1
+prerank,Endoplasmic reticulum-Golgi Intermediate Compartment Membrane (GO:0033116),0.2886937806787246,1.015941789919423,4.254545e-01,6.646165e-01,1.000000e+00,18/36,32.07%,CTSZ;RAB1B;GOSR2;TMED2;KDELR1;CALR;STX5;GORASP1;TBC1D20;TMED10;F8;UVRAG;YKT6;CTSC;CNIH4;SPPL3;TMEM199;ZDHHC9
+prerank,Sin3-type Complex (GO:0070822),-0.3320472105720538,-1.0155170245043539,4.329268e-01,7.491466e-01,1.000000e+00,4/18,15.35%,SIN3B;OGT;SAP30;PHF12
+prerank,Sin3 Complex (GO:0016580),-0.3320472105720538,-1.0155170245043539,4.329268e-01,7.491466e-01,1.000000e+00,4/18,15.35%,SIN3B;OGT;SAP30;PHF12
+prerank,U1 snRNP (GO:0005685),-0.3631086441997218,-1.0101911726459005,4.466667e-01,7.467784e-01,1.000000e+00,4/15,5.74%,LUC7L;PRPF40B;LUC7L3;SNRNP70
+prerank,Golgi-associated Vesicle (GO:0005798),-0.284333745509316,-1.0077540831604894,4.522822e-01,7.359773e-01,1.000000e+00,12/35,22.34%,PKD1;TGOLN2;AP1G2;ZDHHC17;CCDC115;ITM2B;ZDHHC13;OCRL;RAB27B;RAB8B;GPR89A;GOPC
+prerank,MLL1/2 Complex (GO:0044665),-0.29625630553084437,-1.0006894595528446,4.317269e-01,7.400463e-01,1.000000e+00,8/28,23.68%,KMT2A;KANSL1;KMT2B;HCFC1;TAF1;CHD8;RBBP5;TAF7
+prerank,Golgi Lumen (GO:0005796),-0.31205908046097686,-0.9997101314304002,4.523364e-01,7.260995e-01,1.000000e+00,9/23,19.06%,MUC20;MUC1;AGRN;MUC15;GOLIM4;TGFB1;RAB33B;PPIL2;HSPG2
+prerank,Endoplasmic Reticulum Lumen (GO:0005788),0.21980984816603552,0.993172693994422,4.768612e-01,7.204410e-01,1.000000e+00,30/117,17.78%,APP;TIMP1;CTSZ;TXNDC16;MANF;CST3;PDIA6;ERAP2;TSPAN33;CALU;FSTL1;APLP2;TOR1A;TXNDC12;GPX7;CALR;NUCB1;CRTAP;FUCA2;ERP29;TOR2A;CANX;HSP90B1;ERP44;JMJD8;TXNDC5;GOLM1;SUMF2;MGAT4A;TOR1B
+prerank,Lysosome (GO:0005764),0.19222726801399664,0.983218433044986,5.009940e-01,7.397560e-01,1.000000e+00,76/309,23.63%,IFI30;GLA;MFSD12;HSPA8;ATP6V0D1;NAAA;CTSZ;VTI1B;LAMTOR1;ANXA6;SLC39A14;IFITM2;TECPR1;GLB1;ATP6V1B2;USP5;TMEM97;GNS;SEC13;CTSB;ATP6V1E1;GYG1;ATP6V1C2;FMOD;GUSB;ABCB6;SMPD1;BLOC1S1;HYAL2;RNF19B;FUCA2;AP3B1;SLC39A8;CTSD;GNA11;OCIAD1;AP1M2;CHMP6;ATP6V0E1;ASAH1;LYN;GRN;PPT1;UBA52;ATRAID;RAB5C;TXNDC5;SLC11A1;RPTOR;ATP6V1H;LRRC8A;USP4;TOM1L1;NPC2;LGMN;ATP6V0E2;VPS33A;RPS6KC1;AP1B1;FUCA1;AP2M1;CHMP2A;CLTC;GPR137;CPQ;P2RX4;PI4K2A;ITM2C;AP3D1;SNX6;LAPTM4A;CHID1;MAN2B1;TMEM9;SLC17A5;UVRAG
+prerank,SCF Ubiquitin Ligase Complex (GO:0019005),0.2724389261987068,0.9826322718595494,4.783465e-01,7.327127e-01,1.000000e+00,9/40,17.25%,TMEM183A;CUL1;CUL2;SKP2;FBXO27;CKS1B;FBXL5;CKS2;SKP1
+prerank,Clathrin-Coated Vesicle (GO:0030136),-0.24317301109339923,-0.9778991640286272,5.020161e-01,7.722149e-01,1.000000e+00,17/58,22.49%,DAB2;TNK2;VAMP2;ECE1;TGOLN2;HIP1R;HIP1;FCHO2;MYO6;SNX18;OCRL;RAB27B;STX6;GGA2;RAB8B;GOPC;LMBRD1
+prerank,Membrane Raft (GO:0045121),0.23807221583223573,0.971768725740901,4.930966e-01,7.539594e-01,1.000000e+00,16/68,16.65%,APP;MME;ORAI1;LAMTOR1;STOML2;CAPN2;ATP1A1;ORC3;HYAL2;DYNLL1;CTSD;STIM1;LYN;PPT1;STX12;FAS
+prerank,Cytoskeleton (GO:0005856),-0.18644321343049283,-0.9690492010683845,5.872093e-01,7.806608e-01,1.000000e+00,66/345,16.76%,ARSJ;AHNAK;FHOD3;EPPK1;PLEC;CNN3;STON1;APBB3;LYST;NINL;MYO5B;EVPL;SPTBN1;SMARCA2;SYNE2;CROCC;KLF4;ABLIM3;DDX60;MAP7D2;ATXN7;LIMD2;PPP1R9B;ARHGAP32;CLIP1;WASF1;SMTN;SOX9;DGKQ;RBM39;CCDC146;FHOD1;PHIP;DYRK3;ATP12A;MYO5A;PDLIM7;SVIL;ARHGAP33;BAIAP2L1;MPZL2;HIP1;ARHGEF2;SCNN1D;MYO6;NISCH;MAST2;KLHL17;ZNF131;NAV1;DYRK1A;KATNB1;ILF3;ABLIM1;CTTNBP2NL;NES;LRRFIP1;MAP7;MTSS1;ZYX;INTS6;ROCK1;SDCBP;PJA2;DYRK2;NEURL1B
+prerank,Actin Filament (GO:0005884),0.27338975844875224,0.9633977756977569,4.907598e-01,7.682868e-01,1.000000e+00,13/39,25.94%,COTL1;RAC1;TPM4;DNAJA3;PSTPIP2;PALLD;GAS2;CORO1B;DMTN;DIAPH3;AIF1L;TPM1;TPM3
+prerank,Transport Vesicle Membrane (GO:0030658),0.2890804621233709,0.9615993315954006,5.149813e-01,7.648153e-01,1.000000e+00,5/30,8.06%,ECE2;VTI1B;GOSR2;TMED2;SEC13
+prerank,Caveola (GO:0005901),-0.2870084704161401,-0.957453293430632,5.103306e-01,7.971404e-01,1.000000e+00,6/27,10.85%,CBL;INSR;BMPR2;PTCH1;HDAC6;LRP6
+prerank,Nuclear Inner Membrane (GO:0005637),-0.3053947690341452,-0.9468514972579152,5.322940e-01,8.109533e-01,1.000000e+00,7/19,22.12%,TMEM120B;SMAD3;DPY19L4;MFSD10;SIRT1;DPY19L1;LEMD3
+prerank,Endoplasmic Reticulum Tubular Network (GO:0071782),0.3095863165720406,0.9425428764310307,5.578093e-01,8.092988e-01,1.000000e+00,9/20,29.14%,PARP8;REEP5;STIM1;REEP4;ATL2;EMD;RNF41;ARV1;ATL3
+prerank,Lipid Droplet (GO:0005811),0.24939238575226794,0.9414704707324891,5.513834e-01,8.030276e-01,1.000000e+00,12/50,20.39%,ALDH3B2;PNPLA4;DGAT2;BCAP31;NSDHL;BSCL2;ACSL3;RAB5C;VCP;GAPDH;AIFM2;CTDNEP1
+prerank,Golgi Cisterna (GO:0031985),-0.2781839155097676,-0.9364390364549822,5.473251e-01,8.238233e-01,1.000000e+00,7/29,16.17%,GOLGA8A;SORL1;RAB30;HLA-A;GOLGA2;HID1;STX16
+prerank,Nuclear Membrane (GO:0031965),0.19931028820868396,0.9352753370808802,5.963115e-01,8.109208e-01,1.000000e+00,40/155,22.21%,NUP93;CENPV;NUTF2;CDK4;GLB1;LMNB2;TOR1A;TMEM97;FZR1;LTC4S;KPNA2;NUP133;APEH;MRPS14;GLE1;DHCR7;IPO5;LMNB1;TXNL4A;NUP205;GAPDH;TMEM53;MRPL36;RETSAT;UNC50;AHCTF1;LBR;NDC1;NUP35;MLX;TMEM147;CREB3L4;TBC1D20;CTDNEP1;EMD;DPY19L2;ZNF383;XPO1;DCTN5;SURF4
+prerank,Cell Projection Membrane (GO:0031253),-0.2504795637283669,-0.9344575198751005,5.591182e-01,8.123786e-01,1.000000e+00,9/42,15.71%,SLC6A6;PKD1;SYNE2;GNA13;PTCH1;SLC17A4;SHANK2;PODXL;MFSD10
+prerank,Basolateral Plasma Membrane (GO:0016323),0.22622488825626313,0.9312326313577872,5.883495e-01,8.131488e-01,1.000000e+00,15/72,16.68%,SLC4A4;ANK3;AURKA;IDE;B4GALT1;SLC39A14;SLC7A5;PDZD11;ATP1A1;LIN7A;SLC39A8;SLC31A1;CD81;SLC16A1;SLC5A6
+prerank,Multivesicular Body (GO:0005771),0.28149277350060253,0.928221359561053,5.684008e-01,8.128224e-01,1.000000e+00,1/26,0.06%,SFTPA2
+prerank,Neuromuscular Junction (GO:0031594),0.30476273417602273,0.924736324514818,5.435993e-01,8.131954e-01,1.000000e+00,3/18,9.10%,SYNGR2;CDK5;DNAJA3
+prerank,Pericentric Heterochromatin (GO:0005721),0.3210784742709497,0.9234648366365109,5.356415e-01,8.077507e-01,1.000000e+00,7/16,33.98%,POLE3;LRWD1;NCAPD3;SIRT6;CBX5;CHRAC1;UHRF2
+prerank,Serine/Threonine Protein Kinase Complex (GO:1902554),0.2564485262173274,0.9171569430649292,5.796545e-01,8.163313e-01,1.000000e+00,18/39,30.25%,PARD3;CDK4;CDK5;STK11;CCNB2;CKS1B;CAB39L;MCM2;CKS2;CDK2;TANK;STRADB;PARD6A;CCND3;CDK1;CCNA2;CCNI;PARD6G
+prerank,trans-Golgi Network (GO:0005802),-0.19599473478585877,-0.9153277221665674,6.585859e-01,8.482587e-01,1.000000e+00,32/154,19.17%,RHOBTB3;ATP8A1;MMP24;SORL1;ATP8B2;VAMP2;KIF13A;BAIAP3;TGOLN2;PHIP;ATG9B;SLC24A5;TMEM165;RAB30;GCC2;ATXN2;DENND5A;TJAP1;ATP2C2;COG8;SCAMP5;ARAP1;HOOK2;ATP9A;PICK1;STX16;OPTN;OCRL;PCSK7;STX6;AP4E1;NDST1
+prerank,Polymeric Cytoskeletal Fiber (GO:0099513),-0.19743687537557697,-0.9128932606850013,6.529774e-01,8.378899e-01,1.000000e+00,23/150,10.81%,SYNJ1;TRIM54;EPPK1;PLEC;PNN;EFHC2;EVPL;KIF7;KIF13A;CLIP1;KIFC2;MX1;TSC1;KIF21A;MYO5A;TWF2;HDAC6;KIF14;KIF12;ARHGEF2;GAS8;MYO6;FGF13
+prerank,COPII-coated ER To Golgi Transport Vesicle (GO:0030134),0.2435403041834795,0.9111780750585731,6.080306e-01,8.236194e-01,1.000000e+00,8/52,8.06%,ERGIC1;CTSZ;VTI1B;GOSR2;YIF1A;TMED2;ERGIC3;SEC13
+prerank,Lysosomal Membrane (GO:0005765),0.18494683696245695,0.9097630280077992,7.051546e-01,8.186473e-01,1.000000e+00,63/237,25.38%,MFSD12;HSPA8;ATP6V0D1;VTI1B;LAMTOR1;B4GALT1;ANXA6;SLC39A14;IFITM2;TECPR1;ATP6V1B2;MGST1;AP2S1;SEC13;ATP6V1E1;ATP6V1C2;ABCB6;BLOC1S1;CPNE3;AP3B1;SLC39A8;CTSD;TMEM179B;GNA11;AP1M2;CHMP6;ATP6V0E1;LYN;GRN;UBA52;ATRAID;CLTA;RAB5C;PRCP;EEF1A1;RPTOR;ATP6V1H;NDUFC2;LRRC8A;ATP6V0E2;VPS33A;DDOST;AP1B1;AP2A1;AP2M1;CHMP2A;CLTC;GPR137;P2RX4;PIGR;BLOC1S2;PI4K2A;AP3D1;SURF4;LAPTM4A;LPCAT1;TMEM9;SLC17A5;EEF1A2;TMBIM1;CLN3;RRAGA;LITAF
+prerank,Endocytic Vesicle (GO:0030139),0.21081489569293554,0.9056664734112521,6.374502e-01,8.208082e-01,1.000000e+00,22/93,21.22%,SFTPA2;CD9;RPS27A;UBB;RAB32;CLTB;AP2S1;CALR;HYAL2;RAB34;HSP90B1;LYN;UBA52;CLTA;STAB1;STX12;AP2A1;AP2M1;CLTC;PDIA3;HYOU1;EHD4
+prerank,Calcium Channel Complex (GO:0034704),-0.30588916136019373,-0.890508469191433,6.244726e-01,8.799819e-01,1.000000e+00,3/17,5.32%,PKD1;PDE4B;CACNA1D
+prerank,Cul4-RING E3 Ubiquitin Ligase Complex (GO:0080008),-0.2767089546413819,-0.885190155143647,6.480687e-01,8.776420e-01,1.000000e+00,9/24,30.20%,CDKN1B;GLMN;DCAF5;DDB2;DCAF4;DCAF16;CUL4B;CUL4A;DCAF13
+prerank,MLL1 Complex (GO:0071339),-0.26040992039660477,-0.870357808418896,6.578947e-01,8.976152e-01,1.000000e+00,7/27,23.68%,KMT2A;KANSL1;HCFC1;TAF1;CHD8;RBBP5;TAF7
+prerank,Coated Vesicle Membrane (GO:0030662),0.25693271557157554,0.8643197442510401,6.635338e-01,9.173800e-01,1.000000e+00,5/31,8.06%,VTI1B;GOSR2;TMED2;KDELR1;SEC13
+prerank,ER To Golgi Transport Vesicle Membrane (GO:0012507),0.2519816309674249,0.8635282454884702,6.886792e-01,9.101768e-01,1.000000e+00,5/34,8.06%,VTI1B;PEF1;GOSR2;TMED2;SEC13
+prerank,Pigment Granule (GO:0048770),0.3085194124732787,0.8628203461238335,6.402439e-01,9.029761e-01,1.000000e+00,2/15,4.78%,MFSD12;RAB32
+prerank,Late Endosome Membrane (GO:0031902),0.21884432519834054,0.853051509673861,7.303150e-01,9.172192e-01,1.000000e+00,6/55,5.66%,VTI1B;LAMTOR1;ANXA6;SLC39A14;IFITM2;GOSR2
+prerank,INO80-type Complex (GO:0097346),-0.27963159711833735,-0.8506845705919245,6.728395e-01,9.260039e-01,1.000000e+00,14/22,35.10%,TRRAP;SRCAP;EP400;NFRKB;INO80;TFPT;INO80B;ANP32E;ING3;ACTR8;UCHL5;BRD8;ACTR6;YY1
+prerank,Euchromatin (GO:0000791),-0.26150731198257343,-0.8502681050482764,7.006110e-01,9.104378e-01,1.000000e+00,8/24,25.68%,JUN;KMT2E;SETD5;ELL;SIRT1;CREB1;ID2;CTR9
+prerank,Microvillus (GO:0005902),0.26206181669685,0.8487678064395662,6.735113e-01,9.175304e-01,1.000000e+00,6/24,14.69%,STARD10;SLC7A5;SLC9A3R1;VIL1;HYAL2;MYO1F
+prerank,Postsynaptic Density (GO:0014069),0.2109001584128931,0.8426457176442416,7.436399e-01,9.221083e-01,1.000000e+00,16/69,20.98%,GRIN3A;PDLIM5;SIGMAR1;RPS14;CDK5;RPL14;HOMER2;RPS25;RPS3;RPS13;NETO2;FOXM1;FXR2;FABP5;RPL12;ADD3
+prerank,Early Endosome (GO:0005769),-0.17636523476309166,-0.8401196938689346,8.487230e-01,9.155095e-01,1.000000e+00,46/176,23.74%,SLC2A13;SORL1;LDLRAD4;WDFY1;TMEM184A;HLA-B;TBC1D2B;BAIAP3;HLA-E;WDR91;TRAK1;LMTK2;MYO5A;TPCN1;HLA-A;LRP6;VPS16;VIPAS39;ANKRD13B;WDR81;ATP9A;EEA1;PICK1;TMEM30A;RAB5A;ZFYVE16;NEURL1B;ZFYVE28;OCRL;STX6;TBC1D16;PTPN23;MON2;GGA2;BOK;VPS4A;KIF16B;HLA-C;WASH4P;SNX21;CLCN3;SLC11A2;SNX27;HTT;RAB22A;PLEKHF2
+prerank,Asymmetric Synapse (GO:0032279),-0.20436915882621942,-0.8374702842760113,7.834646e-01,9.054758e-01,1.000000e+00,13/66,15.88%,CPEB4;PPP1R9B;ARHGAP32;DNAJC6;FMR1;DLG5;HIP1R;PTK2B;GRIN1;SHANK2;SEMA4C;HOMER3;PICK1
+prerank,Cytoplasmic Stress Granule (GO:0010494),-0.20884114161540343,-0.8357727839528508,7.549801e-01,8.939416e-01,1.000000e+00,10/59,17.52%,CELF1;PABPC1L;PRKAA2;FMR1;DYRK3;DDX3X;RC3H1;ROCK1;TRIM25;GRB7
+prerank,trans-Golgi Network Membrane (GO:0032588),0.20626513673846808,0.8353996476581618,7.505112e-01,9.278135e-01,1.000000e+00,12/69,14.87%,APP;SCAMP4;COG2;SCAMP3;COG7;RABEPK;SYS1;SLC30A6;COG4;SCAMP2;AP1M2;CLTA
+prerank,Melanosome (GO:0042470),0.28341173101329437,0.8273287138997093,6.918489e-01,9.361571e-01,1.000000e+00,2/17,4.78%,MFSD12;RAB32
+prerank,Cytoplasmic Side Of Plasma Membrane (GO:0009898),-0.2006338111484245,-0.8240795601379964,8.056112e-01,9.016322e-01,1.000000e+00,18/71,19.52%,STAC;GEM;PTPN3;FRK;CYTH1;TRADD;YES1;TYK2;PTK6;SAMD10;SNX18;FRMD6;ALOX15;CYLD;TRAF3;ERRFI1;BIRC2;PLEKHA4
+prerank,Extrinsic Component Of Cytoplasmic Side Of Plasma Membrane (GO:0031234),-0.22007666996929567,-0.8205810537445486,7.435897e-01,8.930015e-01,1.000000e+00,11/41,20.90%,STAC;GNA13;FRK;CYTH1;GNAI1;YES1;PTK6;SNX18;ERRFI1;PLEKHA4;S100A6
+prerank,cis-Golgi Network (GO:0005801),0.23400720944318149,0.8152527653509014,7.504726e-01,9.510617e-01,1.000000e+00,17/35,33.73%,COPZ2;KDELR1;SLC35C2;TRAPPC6A;GORASP1;IFT20;TMED10;GPR108;B3GAT3;KDELR2;SLC10A7;LRPAP1;TRAPPC3;ANGEL1;GORASP2;GOSR1;TMED5
+prerank,Golgi Membrane (GO:0000139),-0.15811758123182681,-0.7969413418420795,9.740000e-01,9.186803e-01,1.000000e+00,50/257,19.17%,MAPK8IP3;PKD1;NOTCH1;SORL1;LDLRAD4;HLA-B;HLA-E;ST3GAL5;QSOX1;ZDHHC8;ATG9B;RAB30;MAN2A2;AP1G2;CYTH2;HLA-A;B3GNT5;CYTH1;GOLIM4;SLC35A1;ZDHHC17;GNPTAB;GOLGA2;SACM1L;ATP2C2;COG8;SCAMP5;SLC35A3;HS2ST1;RAB33B;HID1;RAB6B;CHPF2;ENTPD4;ARFGAP3;TRIM23;B3GNT2;STX16;OPTN;ZDHHC21;ZDHHC13;NDST2;FKTN;NRAS;UNC93B1;MANEA;LMAN1;PCSK7;STX6;NDST1
+prerank,Endocytic Vesicle Membrane (GO:0030666),0.19384347664114895,0.7932946198201254,8.661258e-01,9.820410e-01,1.000000e+00,16/70,19.89%,ATP6V0D1;CD9;RPS27A;UBB;AP2S1;LDLRAP1;CALR;ATP6V0E1;LYN;UBA52;SLC11A1;STAB1;ATP6V0E2;AP2A1;AP2M1;CLTC
+prerank,Clathrin-Coated Endocytic Vesicle Membrane (GO:0030669),-0.2387451004132517,-0.7817323265052712,7.952286e-01,9.276492e-01,1.000000e+00,3/25,5.16%,VAMP2;HBEGF;TGOLN2
+prerank,Secretory Granule Membrane (GO:0030667),0.1721602031147221,0.77964489097566,9.307536e-01,9.956604e-01,1.000000e+00,45/137,31.04%,MME;CD9;RAC1;RHOA;LAMTOR1;B4GALT1;RHOG;TMED2;PTPRJ;APLP2;MGST1;HMOX2;CPNE3;DYNLL1;SERPINB6;TMEM179B;RAB5C;SLC11A1;PRCP;NDUFC2;DEGS1;CD47;DDOST;PCDH7;FABP5;PIGR;TMED10;SURF4;LPCAT1;ICA1;ANO6;COPB1;TMBIM1;DGAT1;LAMTOR3;AP1M1;ATP6V1D;DYNC1LI1;ANXA7;CYB5R1;ALDH3B1;DNAJC13;RAB5B;NCSTN;RAB7A
+prerank,Bounding Membrane Of Organelle (GO:0098588),0.1461516500230954,0.7772059160010736,9.921415e-01,9.905783e-01,1.000000e+00,108/469,24.86%,ECE2;MVB12A;BSG;MME;ATP6V0D1;CD9;PGAP2;PMEPA1;TCTN3;RNF121;COPZ2;RPS27A;CTSZ;COG2;RAC1;RHOA;VPS25;B4GALT1;UBB;ABHD17A;RAB1B;RHOG;GOSR2;GALNT8;ARF1;EMC6;TMED2;RHOD;COPZ1;APLP2;SLC35A4;COG7;KDELR1;AP2S1;WDR83;CALR;ABCB6;COPE;SLC35A2;EXT2;HYAL2;COG4;CTSD;SERPINB6;STIM1;TMEM179B;NAA60;AP1M2;CHMP6;ATP6V0E1;RER1;LYN;ZDHHC3;SNX17;UBA52;ATP6AP1;STAB1;SNX3;B4GALT3;MGAT4A;COPG2;ST3GAL3;COPG1;TMEM115;STX5;TPST1;GABARAPL2;ATP6V0E2;VPS33A;AP1B1;AP2A1;ATP2A1;APOO;AP2M1;DMTN;GORASP1;COPB2;TBC1D20;FABP5;TSG101;PSENEN;IFT20;TMED10;B3GNT4;GPR108;PI4K2A;AP3D1;F8;SURF4;ARHGAP1;VPS37A;BBS4;GALNT2;VPS45;UVRAG;RAB1A;FURIN;ICA1;COPB1;CREB3;B3GALNT1;CORO1C;TMBIM1;B4GALT2;B3GAT3;RAB8A;KDELR2;CLN3
+prerank,Late Endosome (GO:0005770),0.17274452619990815,0.7767842417366541,9.209486e-01,9.822576e-01,1.000000e+00,9/128,5.66%,SFTPA2;MFSD12;MAP2K2;VTI1B;LAMTOR1;ANXA6;SLC39A14;IFITM2;GOSR2
+prerank,Mitotic Spindle (GO:0072686),0.17777933524263143,0.7757575698100394,8.953975e-01,9.749365e-01,1.000000e+00,37/103,32.27%,TUBG1;AURKA;SKA3;KNSTRN;FAM83D;CDC6;TUBB3;RPS3;CAPG;DYNLL1;DLGAP5;RACGAP1;HAUS8;SKA1;TADA3;KIF18A;TPX2;HAUS4;AGBL5;PKP4;CLTC;MAD2L1;TMEM9;CDC27;TUBB4B;SIRT2;CDK1;TBCK;CENPE;HDAC3;NGRN;NUSAP1;EPB41;CUL3;KIF22;KATNBL1;NUDC
+prerank,Plasma Membrane Raft (GO:0044853),0.2221994378884572,0.7680288849769636,8.087649e-01,9.771714e-01,1.000000e+00,6/31,16.47%,CD320;ORAI1;RANGRF;DYNLL1;STIM1;KIF18A
+prerank,Cytoplasmic Vesicle Membrane (GO:0030659),-0.15324432181456707,-0.7587878061714419,9.805068e-01,9.429489e-01,1.000000e+00,54/221,23.84%,ITPR1;PKD1;SORL1;VAMP2;VOPP1;HBEGF;MYO5B;TMEM184A;KIF13A;HLA-B;COLEC12;ITPR3;ECE1;INSR;SLC30A1;ATAD3B;CD44;PTCH1;CLCN6;TMEM165;TPCN1;VAMP5;ZDHHC17;VPS16;C2CD5;RAB24;MDM2;VPS13A;ITM2B;MFSD10;PICK1;RAB5A;VPS39;ZDHHC13;RHOU;SLA2;MAP3K7;CAMK2B;GGA2;CAMK2G;APPBP2;APH1B;VPS4A;ACAP2;GPR89A;GOPC;HLA-C;TAB1;CLCN3;HTT;SPIRE1;VPS4B;TAB3;RHOB
+prerank,cullin-RING Ubiquitin Ligase Complex (GO:0031461),0.16896280743619285,0.7581256355220751,9.702381e-01,9.825419e-01,1.000000e+00,20/124,15.99%,TMEM183A;UBE2C;PEF1;ANAPC5;ANAPC13;COMMD1;CUL1;FEM1A;FZR1;DCAF6;CUL2;CDC20;ANAPC15;SKP2;FBXO27;CKS1B;ANAPC7;FBXL5;CKS2;ANAPC10
+prerank,Endosome Membrane (GO:0010008),0.15302502518513184,0.7578095263661837,9.888268e-01,9.744348e-01,1.000000e+00,54/232,24.86%,MVB12A;SCAMP4;ATP6V0D1;PMEPA1;RPS27A;RAC1;VTI1B;VPS25;LAMTOR1;ANXA6;SLC39A14;UBB;SCAMP3;IFITM2;ABHD17A;GOSR2;RHOD;APLP2;AP2S1;WDR83;ABCB6;CTSD;SCAMP2;CHMP6;ATP6V0E1;SLC31A1;SNX17;UBA52;ATP6AP1;CLTA;RAB5C;SLC11A1;SNX3;ATP6V0E2;VPS33A;AP2A1;AP2M1;CLTC;PDIA3;TSG101;PSENEN;EHD4;PI4K2A;AP3D1;ARHGAP1;VPS37A;SNX6;LAPTM4A;VPS45;LLGL1;CORO1C;TMBIM1;RAB8A;CLN3
+prerank,Specific Granule (GO:0042581),0.1754427761327825,0.7394537070545066,9.410526e-01,9.887858e-01,1.000000e+00,15/81,18.49%,CNN2;CTSZ;LAMTOR1;PTPRJ;GGH;HMOX2;ILF2;CYFIP1;NIT2;CTSD;CRISP3;ERP44;DEGS1;CD47;CANT1
+prerank,Lytic Vacuole Membrane (GO:0098852),0.15107931815212072,0.7319289087748705,9.860835e-01,9.890755e-01,1.000000e+00,50/195,27.11%,MFSD12;HSPA8;ATP6V0D1;VTI1B;LAMTOR1;ANXA6;SLC39A14;IFITM2;TECPR1;ATP6V1B2;SEC13;ATP6V1E1;ATP6V1C2;ABCB6;BLOC1S1;AP3B1;SLC39A8;CTSD;GNA11;AP1M2;CHMP6;ATP6V0E1;LYN;GRN;UBA52;ATRAID;RAB5C;RPTOR;ATP6V1H;LRRC8A;ATP6V0E2;VPS33A;AP1B1;AP2M1;CHMP2A;GPR137;P2RX4;PI4K2A;AP3D1;LAPTM4A;TMEM9;SLC17A5;TMBIM1;CLN3;RRAGA;LITAF;LAMTOR3;AP1M1;ANXA2;ATP6V1D
+prerank,Phagocytic Vesicle Membrane (GO:0030670),0.21473932037795584,0.7178370832955023,8.549020e-01,9.957568e-01,1.000000e+00,6/29,18.30%,ATP6V0D1;APLP2;CALR;ATP6V0E1;SLC11A1;ATP6V0E2
+prerank,Glutamatergic Synapse (GO:0098978),0.21714380474264522,0.6937229091836394,9.050388e-01,1.000000e+00,1.000000e+00,2/24,2.71%,RAC1;RHOA
+prerank,Tertiary Granule Membrane (GO:0070821),0.19954556226480802,0.6718498083395378,9.139344e-01,1.000000e+00,1.000000e+00,7/28,25.84%,DYNLL1;SERPINB6;SLC11A1;CD47;ANO6;COPB1;LAMTOR3
+prerank,P-body (GO:0000932),0.17205862491882992,0.6637922532951498,9.761431e-01,1.000000e+00,1.000000e+00,7/54,10.50%,BTBD2;LSM3;LSM1;POLR2G;LSM2;LSM4;PSMC3
+prerank,Phagocytic Vesicle (GO:0045335),0.16889048254176287,0.6564840532170759,9.781746e-01,1.000000e+00,1.000000e+00,11/56,20.51%,ATP6V0D1;RAB32;APLP2;CALR;RAB34;ATP6V0E1;SLC11A1;SNX3;STX12;ATP6V0E2;PDIA3
+prerank,SWI/SNF Complex (GO:0016514),0.2180512083195242,0.6513020046361441,9.107505e-01,1.000000e+00,1.000000e+00,6/20,27.05%,SMARCD2;BCL7B;PHF10;SMARCD3;SMARCB1;SMARCC1
+prerank,SAGA Complex (GO:0000124),0.2145157663439014,0.6480329934476127,9.335863e-01,9.990853e-01,1.000000e+00,6/20,25.67%,TMEM98;SUPT3H;TAF12;TADA3;TAF10;SF3B5
+prerank,Golgi Stack (GO:0005795),-0.20141173255054157,-0.6434528794743324,9.369748e-01,1.000000e+00,1.000000e+00,5/23,17.96%,SORL1;RAB30;STX16;OCRL;RAB27B
+prerank,Specific Granule Membrane (GO:0035579),-0.17154815579149457,-0.6393339272672887,9.759036e-01,1.000000e+00,1.000000e+00,3/43,6.74%,ATP8A1;MMP24;SLC15A4
+prerank,Autophagosome Membrane (GO:0000421),-0.1869128452981857,-0.6257312043871445,9.514170e-01,1.000000e+00,1.000000e+00,6/28,16.61%,JMY;ENTPD4;ULK1;GABARAPL1;WDR81;CHMP2B
+prerank,SAGA-type Complex (GO:0070461),0.17680741761857785,0.6041989427499292,9.601594e-01,1.000000e+00,1.000000e+00,4/34,10.56%,POLE3;TMEM98;SUPT3H;TAF12
+prerank,Kinetochore Microtubule (GO:0005828),0.2026748167915149,0.5774780352958344,9.591002e-01,1.000000e+00,1.000000e+00,5/16,32.44%,CHMP6;KIF18A;CHMP2A;CENPE;CHMP3
+prerank,Vacuolar Membrane (GO:0005774),-0.14990259615450544,-0.5671629157373367,9.938900e-01,1.000000e+00,1.000000e+00,8/45,16.61%,JMY;CCDC115;ENTPD4;ULK1;WDR59;GABARAPL1;WDR81;CHMP2B
+prerank,Heterochromatin (GO:0000792),0.1529104735707153,0.5455888847146655,9.941520e-01,1.000000e+00,1.000000e+00,11/34,33.98%,POLE3;HMGA1;LRWD1;NCAPD3;RRP8;SIRT6;CBX5;SIRT2;CHRAC1;WDR76;UHRF2
+prerank,Transcription Factor TFTC Complex (GO:0033276),0.17756995681966148,0.5164594709755052,9.802372e-01,1.000000e+00,1.000000e+00,3/17,16.22%,SUPT3H;TAF12;TADA3
+prerank,Multivesicular Body Membrane (GO:0032585),0.16615579748440995,0.4737127154768233,9.960630e-01,9.977934e-01,1.000000e+00,16/16,83.41%,CHMP6;CHMP2A;TMEM9;CHMP3;CHMP7;CHMP1A;PMEL;CHMP4C;ATP13A2;LAPTM4B;CD63;CHMP1B;CHMP5;RAB27A;RAB27B;CHMP2B
+prerank,Endoribonuclease Complex (GO:1902555),-0.16046511627906976,-0.47171678968701625,9.958932e-01,9.983239e-01,1.000000e+00,17/17,83.99%,RPP25;DICER1;AGO4;POP7;AGO3;RPP25L;AGO2;TARBP2;RPP40;TSNAX;TSN;DHX9;POP5;POP1;RPP30;PRKRA;POP4

Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_70cr_GO_CC/gseapy.prerank.140293491642832.log

@@ -0,0 +1,8 @@
+2026-05-11 07:09:49,098 prerank140293491642832::[DEBUG   ] Input data is a DataFrame with gene names
+2026-05-11 07:09:49,101 prerank140293491642832::[INFO    ] Parsing data files for GSEA.............................
+2026-05-11 07:09:49,113 prerank140293491642832::[INFO    ] Enrichr library gene sets already downloaded in: /root/.cache/gseapy, use local file
+2026-05-11 07:09:49,130 prerank140293491642832::[INFO    ] 0276 gene_sets have been filtered out when max_size=500 and min_size=15
+2026-05-11 07:09:49,130 prerank140293491642832::[INFO    ] 0198 gene_sets used for further statistical testing.....
+2026-05-11 07:09:49,130 prerank140293491642832::[INFO    ] Start to run GSEA...Might take a while..................
+2026-05-11 07:10:06,032 prerank140293491642832::[INFO    ] Congratulations. GSEApy runs successfully................
+

Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_70cr_GO_MF/gseapy.gene_set.prerank.report.csv

@@ -0,0 +1,282 @@
+Name,Term,ES,NES,NOM p-val,FDR q-val,FWER p-val,Tag %,Gene %,Lead_genes
+prerank,Cis-Regulatory Region Sequence-Specific DNA Binding (GO:0000987),-0.45422686359275594,-2.41194425198483,1.000000e-03,1.000000e-03,1.000000e-03,227/459,27.74%,SATB1;NFAT5;ZNF236;ZNF432;SOX8;SNAPC4;MLXIPL;ETS2;BHLHE40;HOXC4;ZNF445;RORB;NFIL3;MAFF;ZNF83;FOS;JUN;ZKSCAN1;ZNF594;KLF9;ZNF84;NR1D2;ZNF629;ATF3;MLXIP;KLF4;ZNF395;MUC1;CEBPD;ZNF141;ZNF548;FOXN3;ZNF471;ZNF621;RORC;ZNF33A;ZFP62;KLF10;GTF2IRD1;ZNF667;CHD2;TEF;GATA2;FOXO3;MXD1;ZNF710;ZNF789;SMAD9;SOX13;ZNF646;HSF4;MEF2C;ZGPAT;SOX9;ZNF320;NACC2;POU2F1;THRB;LEF1;HDAC4;KLF3;ZNF302;ZBTB17;ZNF219;ZFP1;ZFP30;ZNF23;ZNF467;IRF6;ZNF586;ZNF286A;ZNF165;ZNF736;RFX7;FOXK1;BACH1;SOX4;SMAD3;ZNF202;NPAS2;ELK4;HDAC6;ZSCAN9;PRDM4;FOXL2;ZNF587;PPARD;ZFHX3;ZNF692;ZNF251;ZNF354B;ZSCAN18;DMTF1;IRF9;KLF6;ZNF24;HOXC9;JUNB;ZKSCAN8;KDM6B;KDM6A;OVOL1;ZNF367;IRX4;CALCOCO1;ZNF865;ZNF263;FOXJ3;ZNF431;NLRC5;NR4A1;ZNF107;SOX12;SKIL;WIZ;FOXH1;HMGB2;CCAR1;ZNF148;MAF;ZNF568;LRRFIP1;ZNF776;ZNF28;PRDM5;NR1H2;ZNF181;CDKN2AIP;E2F7;ZNF34;ZBTB22;ZBTB11;HOXC11;ZNF514;ZNF419;ZSCAN29;ZBTB4;ZNF496;ZNF704;NFYB;IKZF5;TBX3;ZNF394;ZNF117;ELL;ZBTB2;ZNF606;SP4;ZNF770;JUND;MZF1;MEF2D;ZNF273;IRX3;MTA1;ZNF384;ZFP82;NFATC3;HOXC10;ZNF37A;ELL2;FOXA1;CC2D1A;NRIP1;ZNF786;ZNF226;GRHL1;RBPJ;TFEB;HOXA11;E2F3;ZNF74;EVX1;ZNF212;ZNF493;PRDM15;IRX5;FOSL2;ELK1;MAFK;ZBTB7B;TCF12;NKRF;FOXP4;DBP;ZNF708;SREBF1;REL;CREB1;ZNF814;ZNF304;STAT2;EHF;THRA;ZNF331;FOXJ2;IRF5;KLF11;ZBTB41;ZNF280D;STAT6;ZNF497;HOXA13;ZNF675;TFAP4;ZNF2;ZNF138;KCNIP3;SAFB;ZNF217;MAFG;ARNT2;ZBTB48;BPTF;RREB1;MYC;FOXN2;ZNF564;ZNF136;E4F1;HOXC6;ZNF721;HSF2;ZNF845;ZNF780A;STAT1;SKI
+prerank,Oxidoreduction-Driven Active Transmembrane Transporter Activity (GO:0015453),0.6281807651907271,2.376749781696348,1.000000e-03,1.086412e-03,1.000000e-03,25/49,17.24%,NDUFS7;UQCRC1;NDUFB9;NDUFS8;NDUFA6;NDUFA10;NDUFB4;UQCR10;CYB5A;NDUFC1;NDUFA4;COX5A;NDUFA3;NDUFS3;NDUFA9;NDUFV2;UQCRH;NDUFS2;NDUFS4;NDUFA7;COX6B1;COX7B;NDUFC2;NDUFB10;NDUFA12
+prerank,RNA Polymerase II Cis-Regulatory Region Sequence-Specific DNA Binding (GO:0000978),-0.4485960208443962,-2.3689811403092755,1.000000e-03,1.000000e-03,1.000000e-03,225/459,27.74%,SATB1;NFAT5;ZNF236;ZNF432;SOX8;SNAPC4;MLXIPL;ETS2;BHLHE40;HOXC4;ZNF445;RORB;NFIL3;MAFF;ZNF83;FOS;JUN;ZKSCAN1;ZNF594;KLF9;ZNF84;NR1D2;ZNF629;ATF3;MLXIP;KLF4;ZNF395;MUC1;CEBPD;ZNF141;ZNF548;ZNF471;ZNF621;RORC;ZNF33A;ZFP62;KLF10;GTF2IRD1;ZNF667;CHD2;TEF;GATA2;FOXO3;MXD1;ZNF710;ZNF789;SMAD9;SOX13;ZNF646;HSF4;MEF2C;ZGPAT;SOX9;ZNF320;NACC2;POU2F1;THRB;LEF1;HDAC4;KLF3;ZNF302;ZBTB17;ZNF219;ZFP1;ZFP30;ZNF23;ZNF467;IRF6;ZNF586;ZNF286A;ZNF165;ZNF736;RFX7;FOXK1;BACH1;SOX4;SMAD3;ZNF202;NPAS2;ELK4;HDAC6;ZSCAN9;PRDM4;FOXL2;ZNF587;PPARD;ZFHX3;ZNF692;ZNF251;ZNF354B;ZSCAN18;DMTF1;IRF9;KLF6;ZNF24;HOXC9;JUNB;ZKSCAN8;KDM6B;KDM6A;OVOL1;ZNF367;IRX4;CALCOCO1;HES1;ZNF865;ZNF263;FOXJ3;ZNF431;NLRC5;NR4A1;ZNF107;SOX12;SKIL;WIZ;CCAR1;ZNF148;MAF;ZNF568;LRRFIP1;ZNF776;ZNF28;PRDM5;NR1H2;ZNF181;CDKN2AIP;E2F7;ZNF34;CREB3L2;ZBTB22;ZBTB11;HOXC11;ZNF514;ZNF419;ZSCAN29;ZBTB4;ZNF496;ZNF704;NFYB;IKZF5;TBX3;ZNF394;ZNF117;ZBTB2;ZNF606;SP4;ZNF770;JUND;MZF1;MEF2D;ZNF273;ATF7;IRX3;MTA1;ZNF384;ZFP82;NFATC3;HOXC10;ZNF37A;FOXA1;CC2D1A;NRIP1;ZNF786;ZNF226;GRHL1;RBPJ;TFEB;HOXA11;E2F3;ZNF74;EVX1;ZNF212;ZNF493;PRDM15;IRX5;FOSL2;ELK1;MAFK;ZBTB7B;TCF12;NKRF;FOXP4;DBP;ZNF708;SREBF1;REL;CREB1;ZNF814;ZNF304;STAT2;EHF;THRA;ZNF331;FOXJ2;TRIM24;IRF5;KLF11;ZBTB41;ZNF280D;STAT6;ZNF497;HOXA13;ZNF675;TFAP4;ZNF2;ZNF138;KCNIP3;SAFB;ZNF217;MAFG;ARNT2;ZBTB48;BPTF;RREB1;MYC;ZNF564;ZNF136;E4F1;HOXC6;ZNF721;HSF2;ZNF845;ZNF780A;STAT1;SKI
+prerank,"DNA-binding Transcription Repressor Activity, RNA Polymerase II-specific (GO:0001227)",-0.5286883405827434,-2.3516446653325187,1.000000e-03,1.000000e-03,1.000000e-03,51/119,18.22%,SATB1;ZNF641;ETS2;BHLHE40;NFIL3;JUN;ZBTB21;ATF3;ZNF785;RORC;ZNF587B;GTF2IRD1;ZNF512B;FOXO3;MXD1;PRDM2;SOX13;ZGPAT;NACC2;ZNF75A;ZNF337;ZBTB5;ZNF219;ZNF133;ZNF529;TRPS1;FOXK1;BACH1;ZNF202;PPARD;ZFHX3;ZNF692;ZNF846;PEG3;HES1;ZNF263;SKIL;ZNF566;ZNF558;ZNF148;LRRFIP1;PRDM5;ZNF25;ZBTB4;ZBTB10;IKZF5;TBX3;ZBTB2;MZF1;IRX3;NFATC3
+prerank,Sequence-Specific DNA Binding (GO:0043565),-0.4360022996846825,-2.240484619616667,1.000000e-03,1.000000e-03,1.000000e-03,121/287,23.36%,MBNL2;SATB1;NFAT5;SOX8;ETS2;BHLHE40;ELF3;HOXC4;RORB;MAFF;FOS;JUN;STON1;KMT2A;NR1D2;ZBTB21;SMG1;CSRNP1;ATF3;ETV3;KLF4;BBX;CEBPD;RORC;KLF10;TEF;GATA2;FOXO3;PRDM2;SOX13;HSF4;SMG6;MEF2C;ZGPAT;SOX9;POU2F1;THRB;ZNF75A;UPF2;LEF1;HDAC4;KLF3;MYBBP1A;ZFP1;SAFB2;ZNF23;ARID5A;IRF6;KMT2B;SLTM;RFX7;FOXK1;SOX4;SMAD3;NPAS2;ELK4;ZSCAN9;PRDM4;FOXL2;PPARD;IRF9;KLF6;ZNF24;HOXC9;JUNB;OVOL1;CALCOCO1;KDM2A;HES1;ZNF276;ZNF263;FOXJ3;KDM5B;NR4A1;SOX12;KDM2B;TET3;FOXH1;CSRNP2;TAF1;ZNF148;MAF;PRDM5;E2F7;ZBTB22;HOXC11;ZSCAN29;ZBTB4;ZNF704;ZBTB10;TBX3;ELF2;ZBTB2;SP4;JUND;MEF2D;ATF7;IRX3;ZNF384;NFATC3;HOXC10;ZBTB45;FOXA1;GRHL1;RBPJ;TFEB;HOXA11;E2F3;EVX1;IRX5;ELK1;MECP2;CHTOP;MAFK;ZBTB7B;TCF12;TELO2;CXXC1;DBP;SREBF1;CREB1
+prerank,NADH Dehydrogenase (Ubiquinone) Activity (GO:0008137),0.6270179661840651,2.1714385216094207,1.000000e-03,3.041954e-02,4.800000e-02,18/33,17.24%,NDUFS7;NDUFB9;NDUFS8;NDUFA6;NDUFA10;NDUFB4;NDUFC1;NDUFA4;NDUFA3;NDUFS3;NDUFA9;NDUFV2;NDUFS2;NDUFS4;NDUFA7;NDUFC2;NDUFB10;NDUFA12
+prerank,NADH Dehydrogenase (Quinone) Activity (GO:0050136),0.6192592878602138,2.1671807667570326,1.000000e-03,2.064183e-02,4.800000e-02,18/34,17.24%,NDUFS7;NDUFB9;NDUFS8;NDUFA6;NDUFA10;NDUFB4;NDUFC1;NDUFA4;NDUFA3;NDUFS3;NDUFA9;NDUFV2;NDUFS2;NDUFS4;NDUFA7;NDUFC2;NDUFB10;NDUFA12
+prerank,rRNA Binding (GO:0019843),0.6155651740179152,2.166065905161092,1.937984e-03,1.548137e-02,4.800000e-02,27/35,28.64%,MRPS7;GTF3A;MRPS27;RPS14;TST;MRPS11;NPM1;FASTKD2;MRPL11;MRPL16;RPS3;RPS5;RPS13;MRPL18;RPL5;DDX28;EMG1;RPL12;SBDS;UTP23;CIRBP;RBM34;PTCD3;RPF2;MRPS18A;ERAL1;NGRN
+prerank,"Oxidoreductase Activity, Acting On The CH-OH Group Of Donors, NAD Or NADP As Acceptor (GO:0016616)",0.5286141637098152,2.107982499732216,1.000000e-03,2.520476e-02,9.200000e-02,24/57,16.59%,AKR1C3;HSD17B7;DHRS7B;BDH1;HPGD;CBR1;HADHA;GRHPR;PGD;MDH2;HSD17B4;HMGCR;AKR7A2;CRYL1;IMPDH2;NSDHL;AKR7A3;ME1;PTGR1;CBR3;RDH11;DCXR;HSD17B10;IMPDH1
+prerank,"DNA-binding Transcription Activator Activity, RNA Polymerase II-specific (GO:0001228)",-0.4329902712556748,-2.0305421539796273,1.000000e-03,4.195362e-03,2.200000e-02,78/161,27.55%,NFAT5;ELF3;HOXC4;ZNF445;MAFF;FOS;JUN;ZNF594;ZNF629;ATF3;MLXIP;KLF4;ZNF395;ZNF33A;ZFP62;KLF10;CASZ1;FOXO3;PRDM2;MEF2C;SOX9;POU2F1;LEF1;ZBTB17;CREBRF;SOX4;SMAD3;ELK4;PRDM4;KLF6;ZNF24;RFXAP;FOXJ3;NR4A1;ZNF107;SOX12;FOXH1;NR1H2;CDKN2AIP;HOXC11;NFYB;TBX3;ZNF606;ZNF770;MZF1;IRX3;ZNF384;NFATC3;HOXC10;FOXA1;ZNF786;ZNF226;GRHL1;RBPJ;E2F3;ZNF493;PRDM15;FOSL2;ELK1;TCF12;NKRF;DBP;SREBF1;REL;CREB1;ZNF814;EHF;FOXJ2;IRF5;STAT6;TFDP2;TFAP4;RREB1;MYC;E4F1;ZNF721;HSF2;ZNF845
+prerank,Translation Initiation Factor Activity (GO:0003743),0.5681451593654757,2.0296577776532416,7.843137e-03,3.838656e-02,1.530000e-01,18/37,23.95%,EIF2B2;EIF3L;EIF3I;EIF2B3;EIF3D;EIF4A1;EIF2S1;EIF3K;EIF3B;EIF3H;EIF2S3;EIF3M;EIF3F;EIF4E2;EIF6;EIF2S2;EIF4E;EIF2D
+prerank,Proton Transmembrane Transporter Activity (GO:0015078),0.5945736978807423,1.9819027600174532,6.072874e-03,4.593971e-02,1.960000e-01,15/28,24.33%,UQCRC1;UQCR10;CYB5A;ATP6V1B2;COX5A;UQCRH;SLC11A1;COX6B1;COX7B;UCP2;COX15;ATP6V1F;MFSD3;COX5B;SLC46A1
+prerank,Double-Stranded DNA Binding (GO:0003690),-0.3908773262731308,-1.9498839908495917,1.000000e-03,9.728376e-03,5.800000e-02,98/259,23.36%,MBNL2;SATB1;NFAT5;SOX8;ETS2;BHLHE40;ELF3;HOXC4;ZNF445;RORB;MAFF;FOS;JUN;MSH5;NR1D2;ATF3;ETV3;KLF4;BBX;DDX60;CEBPD;RORC;KLF10;TEF;GATA2;FOXO3;HSF4;MEF2C;SOX9;THRB;ZNF75A;LEF1;KLF3;ZFP1;ZNF23;ERCC5;IRF6;MAU2;RFX7;FOXK1;SOX4;NPAS2;ELK4;ZSCAN9;PRDM4;FOXL2;PPARD;IRF9;KLF6;HOXC9;PURA;JUNB;OVOL1;HES1;ZNF276;ZNF263;FOXJ3;KDM5B;NR4A1;SOX12;HMGB2;ZNF638;MAF;POLG2;E2F7;ZBTB22;HOXC11;ZSCAN29;ZNF704;DDX11;TBX3;ELF2;ZBTB2;JUND;MEF2D;ATF7;SMC3;IRX3;ZNF384;NFATC3;HOXC10;ZBTB45;FOXA1;GRHL1;TFEB;HOXA11;E2F3;EVX1;IFIT5;IRX5;ELK1;MECP2;ZBTB7B;TCF12;CRY1;DBP;SREBF1;CREB1
+prerank,Sequence-Specific Double-Stranded DNA Binding (GO:1990837),-0.37896558128532193,-1.9449739292942254,1.000000e-03,8.729480e-03,6.100000e-02,125/305,26.28%,MBNL2;NFAT5;PER3;KMT2D;SOX8;ETS2;BHLHE40;ELF3;HOXC4;RORB;MAFF;FOS;JUN;ARID4A;NR1D2;SMARCA2;ATF3;ETV3;TSPYL2;KLF4;BBX;CEBPD;RORC;KLF10;TEF;GATA2;FOXO3;SOX13;CHD3;HSF4;MEF2C;SOX9;THRB;ZNF75A;LEF1;HDAC4;KLF3;YAP1;ZFP1;ZNF23;ARID5A;IRF6;BRD4;RFX7;FOXK1;SOX4;SMAD3;NPAS2;ELK4;ZSCAN9;PRDM4;FOXL2;PPARD;IRF9;KLF6;HOXC9;JUNB;OVOL1;ZNF513;CALCOCO1;HES1;ZNF276;ZNF263;FOXJ3;KDM5B;NR4A1;SOX12;CRY2;BCOR;FOXH1;HMGB2;MAF;ZNF568;PRDM5;E2F7;CREB3L2;ZBTB22;HOXC11;ZSCAN29;ZNF704;NFYB;DDX11;TBX3;ELF2;ZBTB2;JUND;MZF1;MEF2D;ATF7;IRX3;ZNF384;NFATC3;HOXC10;ZBTB45;KAT7;FOXA1;GRHL1;TFEB;HOXA11;E2F3;EVX1;IRX5;RBBP5;ZNF579;ELK1;MAFK;ZBTB7B;TCF12;DBP;SREBF1;CENPC;CREB1;TAF7;THRA;FOXJ2;IRF5;KLF11;HOXA13;TFAP4;TBL1X;ZNF217;ELF5;MAFG;ARNT2;ZBTB48
+prerank,Glutathione Transferase Activity (GO:0004364),0.6426041984955295,1.8085396710174637,1.000000e-03,1.125795e-01,4.790000e-01,6/15,9.32%,GSTT1;GSTM4;GSTM3;MGST1;LTC4S;GSTZ1
+prerank,O-acyltransferase Activity (GO:0008374),0.6370907203207378,1.8046335713397683,1.145038e-02,1.029677e-01,4.860000e-01,3/16,2.59%,MBOAT2;PNPLA4;SOAT1
+prerank,Active Monoatomic Ion Transmembrane Transporter Activity (GO:0022853),0.6452511676310217,1.7965811590758194,1.063830e-02,9.788573e-02,5.070000e-01,7/15,15.75%,UQCRC1;UQCR10;CYB5A;COX5A;UQCRH;COX6B1;COX7B
+prerank,Acetylation-Dependent Protein Binding (GO:0140033),-0.5755288851984197,-1.7715352636386887,1.380671e-02,6.019433e-02,4.100000e-01,9/19,27.90%,KMT2A;ZZEF1;PHIP;BRD4;ZMYND8;TAF1;BAZ2A;TRIM24;BRD3
+prerank,Lysine-Acetylated Histone Binding (GO:0070577),-0.5755288851984197,-1.7715352636386887,1.380671e-02,6.019433e-02,4.100000e-01,9/19,27.90%,KMT2A;ZZEF1;PHIP;BRD4;ZMYND8;TAF1;BAZ2A;TRIM24;BRD3
+prerank,Histone Demethylase Activity (GO:0032452),-0.6089346510733344,-1.77003753382199,4.210526e-03,5.481332e-02,4.160000e-01,10/17,17.63%,KDM3A;PHF8;KDM6B;KDM6A;KDM2A;JMJD1C;KDM5B;KDM2B;PHF1;KDM5C
+prerank,Exopeptidase Activity (GO:0008238),0.5138601675207818,1.7670862913826606,8.163265e-03,1.068634e-01,5.710000e-01,18/33,23.26%,ZMPSTE24;MME;CTSZ;BLMH;ERAP2;RNPEP;GGH;CNDP2;PM20D2;CPE;PRCP;FOLH1;METAP2;XPNPEP1;NPEPPS;METAP1;DPP3;XPNPEP3
+prerank,Acylglycerol O-acyltransferase Activity (GO:0016411),0.6115827330752848,1.7527628562924908,1.639344e-02,1.078264e-01,6.110000e-01,3/17,3.60%,MBOAT2;PNPLA4;DGAT2
+prerank,Ligand-Gated Monoatomic Cation Channel Activity (GO:0099094),-0.5877575868385292,-1.7278137239692157,1.400000e-02,7.155331e-02,5.370000e-01,6/17,10.19%,KCNJ8;SCNN1G;SCNN1B;KCNJ3;TPCN1;SCNN1D
+prerank,snoRNA Binding (GO:0030515),0.5336958977515031,1.6940342655490082,1.359223e-02,1.387265e-01,7.260000e-01,10/23,15.61%,PRKDC;NOP10;NOP14;NOP56;NUDT5;NHP2;XRCC5;NUDT16L1;DKC1;BYSL
+prerank,Adenyl Nucleotide Binding (GO:0030554),0.5637228677153429,1.6915994382470558,9.940358e-03,1.305247e-01,7.310000e-01,6/19,13.68%,DHFR;HPGD;PGD;ME1;ALDH1B1;DHCR7
+prerank,Receptor Ligand Activity (GO:0048018),-0.44737218744938406,-1.690391470817127,4.056795e-03,8.763139e-02,6.450000e-01,24/47,17.93%,GDF9;EDN2;S100A4;VEGFA;GDF15;HSPA1A;DLL1;HBEGF;SEMA5A;BMP2;JAG2;SEMA6A;SEMA3C;TGFB1;SEMA4C;SEMA4A;SEMA4G;HMGB2;EGF;NMB;SEMA4D;VEGFB;SEMA3F;SEMA4B
+prerank,Transcription Cis-Regulatory Region Binding (GO:0000976),-0.3417627009117904,-1.6879298114827908,1.000000e-03,8.278474e-02,6.570000e-01,100/235,28.80%,SATB1;PER3;KMT2D;NFIL3;FOS;JUN;CIC;ARID4A;SMARCA2;ATF3;MLXIP;ZNF517;KLF4;BBX;ZNF395;FOXN3;KLF10;CASZ1;ZNF512B;FOXO3;PRDM2;SOX13;CHD3;MEF2C;SOX9;AGO1;LEF1;HDAC4;ZBTB5;YAP1;ZBTB17;ARID5A;TRPS1;CREBRF;BRD4;FOXK1;SOX4;SMAD3;PURA;ZNF513;CALCOCO1;RFXAP;ZNF263;SOX12;CRY2;BCOR;FOXH1;HMGB2;ZNF568;PRDM5;E2F7;CREB3L2;ZNF799;ZBTB4;ZBTB10;NFYB;IKZF5;ELL;JUND;MZF1;MEF2D;ATF7;HOXC10;ELL2;FOXA1;GRHL1;TFEB;E2F3;RBBP5;ZNF579;FOSL2;ELK1;MAFK;TCF12;DBP;ZNF14;SREBF1;ZNF696;TAF7;THRA;RBL1;KLF11;STAT6;TFDP2;TFAP4;TBL1X;ZNF217;ZBTB48;RREB1;MYC;ZNF433;FOXN2;E4F1;HSF2;STAT1;SETX;PURB;MNT;VEZF1;BARX2
+prerank,NADP Binding (GO:0050661),0.5220889580197412,1.6722338038206948,1.004016e-02,1.370328e-01,7.750000e-01,13/24,31.29%,DHFR;GRHPR;PGD;GMDS;HMGCR;ME1;CBR3;DHCR7;LBR;QDPR;TM7SF2;DECR1;DUS2
+prerank,Single-Stranded DNA Helicase Activity (GO:0017116),0.5509468382728838,1.670806074855005,2.165354e-02,1.296904e-01,7.770000e-01,15/20,29.34%,DSCC1;RFC5;MCM6;RFC3;RFC2;MCM2;MCM4;MCM5;RFC4;MCM3;RAD51;DNA2;MCM7;CHTF8;POLQ
+prerank,DNA-directed 5'-3' RNA Polymerase Activity (GO:0003899),0.4986695807653819,1.6441824997310501,2.204409e-02,1.418726e-01,8.350000e-01,11/27,20.76%,POLR2E;POLR2L;POLRMT;POLR3H;POLR3K;PRIM1;POLR2F;POLR2C;POLR2H;POLR1C;POLR2J
+prerank,NAD Binding (GO:0051287),0.5294678813906661,1.642859096072764,2.123552e-02,1.353187e-01,8.370000e-01,6/22,9.67%,GLUD1;HPGD;HADHA;CRYL1;ME1;ALDH1B1
+prerank,Transcription Regulatory Region Nucleic Acid Binding (GO:0001067),-0.3576041671558126,-1.6167274559495406,1.000000e-03,1.389551e-01,8.520000e-01,49/122,26.28%,PER3;KMT2D;FOS;JUN;ARID4A;SMARCA2;ATF3;KLF4;FOXO3;SOX13;CHD3;MEF2C;HDAC4;YAP1;ARID5A;BRD4;FOXK1;SOX4;SMAD3;ZNF513;CALCOCO1;ZNF263;SOX12;CRY2;BCOR;FOXH1;HMGB2;ZNF568;PRDM5;CREB3L2;NFYB;JUND;MZF1;ATF7;FOXA1;GRHL1;TFEB;RBBP5;ZNF579;ELK1;MAFK;TCF12;TAF7;THRA;KLF11;TFAP4;TBL1X;ZNF217;ZBTB48
+prerank,GTPase Regulator Activity (GO:0030695),-0.3264149956771859,-1.6161411838854574,1.000000e-03,1.306035e-01,8.530000e-01,79/243,19.63%,RANBP3L;TNK2;RGL3;JUN;TNFRSF25;ARHGAP4;PLXNB1;TIAM2;PLCB1;TRIO;IQSEC2;TBC1D2B;SGSM2;DENND4B;ARHGAP32;FAM13A;GNA13;VAV2;ARHGEF17;ARHGEF25;PSD;SPATA13;SBF1;ARHGAP27;TBC1D8;ARHGAP35;ARHGEF1;TBC1D25;BNIP2;ARHGAP33;RGS12;SIPA1L3;RAP1GAP2;IQGAP3;MCF2L;ARHGEF7;CYTH2;ARHGAP39;GDI1;RALGDS;ARHGEF2;CYTH1;DENND5A;ASAP1;DENND3;FLCN;RGS11;RABGAP1;TBC1D12;RIN2;EPS8L2;ARAP1;RAPGEF6;EGF;ARFGAP3;ARHGEF4;HERC2;RANBP2;RALGAPA2;ARHGEF3;NF1;DENND1B;ELMOD3;SOS2;ITSN1;ERRFI1;SEC23A;RHOU;RASA1;OCRL;TBC1D22B;DNMBP;DENND5B;MCF2L2;ARHGAP5;TBC1D16;DENND1C;TSC2;ARHGEF12
+prerank,GTPase Activator Activity (GO:0005096),-0.3542739294500861,-1.6041042615542724,1.000000e-03,1.333852e-01,8.740000e-01,39/117,19.51%,RANBP3L;JUN;ARHGAP4;PLXNB1;PLCB1;TBC1D2B;SGSM2;ARHGAP32;FAM13A;ARHGAP27;TBC1D8;ARHGAP35;TBC1D25;BNIP2;ARHGAP33;RGS12;SIPA1L3;RAP1GAP2;IQGAP3;ARHGAP39;ASAP1;FLCN;RGS11;RABGAP1;TBC1D12;ARAP1;ARFGAP3;RANBP2;RALGAPA2;NF1;ELMOD3;ERRFI1;SEC23A;RASA1;OCRL;TBC1D22B;ARHGAP5;TBC1D16;TSC2
+prerank,Hydro-Lyase Activity (GO:0016836),0.5044409757039829,1.5973511124798578,1.761252e-02,1.696518e-01,9.030000e-01,8/24,5.21%,UROS;FH;ECHS1;HADHA;ACO2;PCBD1;GMDS;HSD17B4
+prerank,5'-3' RNA Polymerase Activity (GO:0034062),0.5550889256766096,1.5928636401437122,2.584493e-02,1.650803e-01,9.040000e-01,5/16,9.07%,POLR2E;POLR2L;POLRMT;POLR3H;POLR3K
+prerank,Cytokine Receptor Activity (GO:0004896),-0.5308818577278568,-1.5601591692697379,2.208835e-02,1.706579e-01,9.370000e-01,8/17,18.24%,LIFR;CD44;IL4R;IL17RE;IL6R;PRLR;EPOR;IL6ST
+prerank,Methylated Histone Binding (GO:0035064),-0.3938012003178798,-1.5495858837850254,1.639344e-02,1.752121e-01,9.430000e-01,26/53,29.71%,KMT2E;CBX8;ZZEF1;FMR1;MORC3;MBTD1;PHF8;SPIN4;SPIN1;CBX2;ZMYND8;TAF1;PWWP2A;PHF1;CBX6;CHD8;SUZ12;CXXC1;TAF7;TRIM24;BPTF;L3MBTL2;CHD1;JMJD7;ING3;ING1
+prerank,Histone H3 Methyltransferase Activity (GO:0140938),-0.4669537470027167,-1.542701054293944,1.996008e-02,1.752548e-01,9.500000e-01,7/26,8.84%,KMT2D;KMT2E;KMT2A;SETD1B;SETD1A;KMT2C;KMT2B
+prerank,Histone Acetyltransferase Activity (GO:0004402),-0.47382849399355664,-1.5410507820458514,3.180915e-02,1.683617e-01,9.500000e-01,15/25,30.83%,NAA40;CREBBP;EP300;KAT2A;SRCAP;KAT2B;TAF1;NCOA3;NAA50;KAT7;MCM3AP;BRCA2;ING3;CLOCK;TADA2A
+prerank,Metallopeptidase Activity (GO:0008237),0.40976001380476645,1.5224187891343381,4.980080e-02,2.432011e-01,9.750000e-01,20/46,20.87%,ECE2;ZMPSTE24;MME;MMP14;IDE;MIPEP;ERAP2;COPS6;MPND;RNPEP;PITRM1;DEPDC1B;EIF3H;THOP1;EIF3F;METAP2;PSMD14;NLN;PSMD7;METAP1
+prerank,Methylation-Dependent Protein Binding (GO:0140034),-0.3895372684404784,-1.5217092045088552,2.429150e-02,1.822768e-01,9.650000e-01,24/50,29.71%,KMT2E;CBX8;ZZEF1;FMR1;MORC3;MBTD1;PHF8;SPIN4;SPIN1;CBX2;ZMYND8;PWWP2A;PHF1;CBX6;CHD8;SUZ12;CXXC1;TRIM24;BPTF;L3MBTL2;CHD1;JMJD7;ING3;ING1
+prerank,"Phosphatidylinositol-3,4,5-Trisphosphate Binding (GO:0005547)",0.4855660304871012,1.5169821961060734,3.564356e-02,2.402452e-01,9.750000e-01,8/20,14.76%,OBSCN;PARD3;FUNDC2;PLEKHB2;COMMD1;MAPKAP1;FERMT2;RACGAP1
+prerank,aminoacyl-tRNA Ligase Activity (GO:0004812),0.5159178446970084,1.5168127286365234,4.200000e-02,2.299415e-01,9.750000e-01,11/17,30.80%,FARSB;YARS2;EARS2;DARS2;LARS2;NARS2;CARS2;FARSA;IARS2;WARS2;TARS2
+prerank,Nuclear Receptor Coactivator Activity (GO:0030374),-0.4106403662297969,-1.5065502457937727,2.559055e-02,1.918591e-01,9.820000e-01,19/43,24.18%,NCOA2;MED14;NCOA6;MED13;SOX9;MED12;HELZ2;ZMIZ1;MED30;CALCOCO1;PPRC1;CCAR1;NCOA3;TMF1;MED22;ZMIZ2;ELK1;MED1;SS18
+prerank,Pentosyltransferase Activity (GO:0016763),0.4517040714447764,1.5058864136073735,4.119850e-02,2.341218e-01,9.800000e-01,5/26,9.63%,PARP4;QPRT;PNP;PARP1;PARP8
+prerank,Cytokine Receptor Binding (GO:0005126),-0.48270564273536354,-1.505603584520758,3.875969e-02,1.847466e-01,9.820000e-01,10/21,20.74%,VEGFA;S100A14;LIFR;SMAD3;IL6R;SOCS2;TYK2;SDCBP;IL6ST;TRIP6
+prerank,Methyltransferase Activity (GO:0008168),0.46269381185166947,1.501687806028607,5.410822e-02,2.311450e-01,9.810000e-01,11/25,25.69%,ECE2;GAMT;COMT;PRMT3;NSUN4;LCMT1;COQ5;RRP8;PRMT5;PRMT1;METTL4
+prerank,Zinc Ion Transmembrane Transporter Activity (GO:0005385),0.5292044731780046,1.4944794332165465,5.590062e-02,2.321579e-01,9.840000e-01,6/16,19.20%,SLC39A3;SLC39A14;SLC30A6;SLC39A8;SLC39A1;SLC39A9
+prerank,Protein Phosphatase 2A Binding (GO:0051721),0.5176676772012739,1.492281428026266,5.168986e-02,2.265370e-01,9.840000e-01,5/15,14.90%,GRIN3A;TP53;ENSA;GNA12;IGBP1
+prerank,Ubiquitin-Like Protein Ligase Activity (GO:0061659),-0.306238279644844,-1.49067092483326,3.968254e-03,1.946435e-01,9.870000e-01,83/201,29.48%,TRIM54;RNF216;MYLIP;CBX4;CBL;TRIM45;TRIM52;LONRF2;LRSAM1;NEURL4;RNF43;RNF44;RNF213;CUL9;ZNRF3;PIAS1;ZNF598;UBR3;ZMIZ1;HECTD2;BIRC3;MIB2;RNF144B;RNF38;TOPORS;RC3H1;MDM2;TRIM14;DTX2;FBXO2;CCAR1;NHLRC3;TRIM23;HERC2;RANBP2;RBBP6;HECTD1;TRIM15;TRIM25;TRAF3;PIAS2;PJA2;MIB1;UBE2O;NEURL1B;FBXO44;RLIM;TRIM2;PPIL2;LONRF1;TRIM26;GID4;BIRC2;ZMIZ2;HERC4;SIAH1;RNFT1;UBE2D1;TRIM7;FANCL;NEDD4L;ANKIB1;SHPRH;RNF146;TRIP12;TRIM24;RFFL;UBE3B;ARIH1;BFAR;RNF19A;RNF6;UBR5;CUL4A;TRIM5;IRF2BPL;SYVN1;PEX12;TRIM39;CBLB;VPS11;MSL2;RNF111
+prerank,Calmodulin-Dependent Protein Kinase Activity (GO:0004683),-0.5190839131415124,-1.487646096715719,5.219207e-02,1.907613e-01,9.890000e-01,8/15,20.33%,CAMKK1;MKNK1;EEF2K;PTK2B;PHKA2;MAPKAPK2;CAMK2B;CAMK2G
+prerank,Peptidase Activator Activity (GO:0016504),0.5253993663761314,1.483892962722398,5.353728e-02,2.306298e-01,9.870000e-01,8/15,21.09%,WDR48;PSME3;VCP;PSME2;PSMD14;PSME1;TANK;PSENEN
+prerank,"Oxidoreductase Activity, Acting On The CH-CH Group Of Donors, NAD Or NADP As Acceptor (GO:0016628)",0.5200488589205597,1.476138053881265,7.186858e-02,2.332789e-01,9.890000e-01,9/15,29.81%,DHCR24;TECR;PTGR1;DHCR7;BLVRA;LBR;DECR2;TM7SF2;DECR1
+prerank,Ferrous Iron Binding (GO:0008198),0.5244648856192771,1.46679516870929,8.704062e-02,2.380691e-01,9.900000e-01,7/15,25.63%,ALKBH3;ISCU;ALKBH1;FECH;ALKBH2;PHYH;FTL
+prerank,SUMO Transferase Activity (GO:0019789),-0.48034376365388975,-1.4590827391257273,6.854839e-02,2.205371e-01,9.950000e-01,8/19,19.13%,HDAC4;PIAS1;ZMIZ1;TOPORS;MDM2;RANBP2;PIAS2;ZMIZ2
+prerank,DNA Endonuclease Activity (GO:0004520),0.5150592966895676,1.4506921804757507,6.641366e-02,2.530289e-01,9.960000e-01,7/15,22.49%,SETMAR;EXO1;ENDOG;APEX1;RPS3;DNA2;ZRANB3
+prerank,Cytokine Activity (GO:0005125),-0.5060379106231532,-1.4473484391174851,6.849315e-02,2.296978e-01,9.980000e-01,5/17,5.50%,GDF9;VEGFA;GDF15;BMP2;ENC1
+prerank,Aminopeptidase Activity (GO:0004177),0.4970036380820983,1.4473352337897007,7.786885e-02,2.508254e-01,9.970000e-01,9/17,23.26%,MMP14;BLMH;ERAP2;RNPEP;METAP2;XPNPEP1;NPEPPS;METAP1;XPNPEP3
+prerank,"RNA Endonuclease Activity, Producing 5'-Phosphomonoesters (GO:0016891)",0.4396030310743988,1.441201599961458,6.138614e-02,2.513233e-01,9.970000e-01,14/26,27.84%,EXO1;RNASEH2A;APEX1;RNASEH1;RPP38;ELAC1;NUDT16L1;MRPL44;POP4;ELAC2;RPP30;POP1;RPP14;DBR1
+prerank,R-SMAD Binding (GO:0070412),-0.47894016503964626,-1.4241384662234158,9.146341e-02,2.580083e-01,1.000000e+00,6/16,17.94%,FOS;JUN;LDLRAD4;SMAD3;FOXH1;TRIM33
+prerank,Nuclease Activity (GO:0004518),0.41125392033725855,1.4195976986637502,6.346154e-02,2.764919e-01,9.990000e-01,19/32,35.99%,SETMAR;EXO1;RNASEH2A;NME1;SND1;APEX1;SAMHD1;RNASEH1;REXO1;NTHL1;DNA2;DDX1;XRN2;OGG1;ANG;PDE12;PLSCR1;DFFB;PNKP
+prerank,Ubiquitin Protein Ligase Activity (GO:0061630),-0.2920560559850514,-1.4182710639386684,1.556420e-02,2.582003e-01,1.000000e+00,83/193,31.04%,TRIM54;RNF216;MYLIP;CBL;TRIM45;TRIM52;LONRF2;LRSAM1;NEURL4;RNF43;RNF44;RNF213;CUL9;ZNRF3;UBE4A;ZNF598;UBR3;HECTD2;BIRC3;MIB2;RNF144B;RNF38;TOPORS;RC3H1;MDM2;TRIM14;DTX2;FBXO2;CCAR1;NHLRC3;TRIM23;HERC2;RBBP6;HECTD1;TRIM15;TRIM25;TRAF3;PJA2;MIB1;UBE2O;NEURL1B;FBXO44;RLIM;TRIM2;PPIL2;LONRF1;TRIM26;GID4;BIRC2;HERC4;SIAH1;RNFT1;UBE2D1;TRIM7;FANCL;NEDD4L;ANKIB1;SHPRH;RNF146;TRIP12;TRIM24;RFFL;UBE3B;ARIH1;BFAR;RNF19A;RNF6;UBR5;CUL4A;TRIM5;IRF2BPL;SYVN1;PEX12;TRIM39;CBLB;VPS11;MSL2;RNF111;RNF113A;MKRN2;RNF138;ARIH2;WWP2
+prerank,Transcription Coactivator Binding (GO:0001223),-0.45012584663185995,-1.417106588744429,8.595388e-02,2.513873e-01,1.000000e+00,13/23,29.13%,CCNT2;THRB;CREBBP;ZBTB17;EP300;SMAD3;PPARD;CIT;ATF7;MED1;STAT6;STAT1;SMAD4
+prerank,Guanyl-Nucleotide Exchange Factor Activity (GO:0005085),-0.3115019618698513,-1.4023159368103835,2.000000e-02,2.666379e-01,1.000000e+00,38/116,19.63%,RGL3;TNFRSF25;TIAM2;TRIO;IQSEC2;DENND4B;GNA13;VAV2;ARHGEF17;ARHGEF25;PSD;SPATA13;SBF1;ARHGEF1;MCF2L;ARHGEF7;CYTH2;RALGDS;ARHGEF2;CYTH1;DENND5A;DENND3;RIN2;EPS8L2;RAPGEF6;EGF;ARHGEF4;HERC2;ARHGEF3;DENND1B;SOS2;ITSN1;RHOU;DNMBP;DENND5B;MCF2L2;DENND1C;ARHGEF12
+prerank,Protein Tyrosine Kinase Activity (GO:0004713),-0.37860932106854733,-1.4004538827686277,5.349794e-02,2.607281e-01,1.000000e+00,19/43,26.76%,TNK2;RPS6KA5;CLK1;INSR;FRK;PTK2B;DYRK1A;YES1;TYK2;PTK6;DYRK2;WEE1;CLK2;HIPK3;CLK4;HIPK1;RYK;ERBB2;SRC
+prerank,Protein Homodimerization Activity (GO:0042803),0.26947953437099625,1.3979210485333735,2.079002e-03,3.031090e-01,1.000000e+00,97/366,20.33%,PON1;GLA;MID1;ODC1;NQO2;MME;TCF3;SETMAR;COQ9;GLUD1;ACOT7;PHB2;SRM;ATIC;IDE;KIF20B;GALM;DGAT2;VPS25;LHPP;PARP1;GSTM4;KNSTRN;PSPH;TPI1;PANK1;GRHPR;YARS2;ENDOG;TPM4;COMMD1;HSD17B4;GLB1;RABL3;HSPB6;NPM1;GSTM3;APLP2;CRYL1;ISCU;MUC13;TERF2;CHUK;OXA1L;NRBP1;GYG1;BANF1;TPD52;GSTZ1;S100A16;SHMT1;HSP90AB1;CISD1;DARS2;VIL1;DCK;MTHFD1L;IDH1;NUDT5;EXT2;TRIM68;MFF;TIMM9;IMPA2;VAPB;HM13;PNPO;SUPV3L1;HMOX1;NAA60;FECH;ZDHHC3;PEX11B;RIPK2;CHEK2;NUDT16L1;SLC11A1;MVD;BAK1;PRKRA;NAGA;TIMM10;MGAT4A;UCP2;CBY1;TPST1;CANT1;ABCB7;ATP2A1;MLX;CALCOCO2;XPNPEP1;STUB1;PSMD7;MAD2L1;FXR2;ZNF174
+prerank,Secondary Active Transmembrane Transporter Activity (GO:0015291),0.41587540804645695,1.3835675003116645,7.723577e-02,3.187111e-01,1.000000e+00,9/29,19.84%,SLC2A12;SLC4A4;SLC25A3;SLC7A5;SLC25A10;SLC25A11;SLC35C2;UCP2;SLC25A15
+prerank,Myosin Binding (GO:0017022),-0.3994021108560041,-1.3795722397785868,7.127430e-02,2.845550e-01,1.000000e+00,11/31,18.69%,SHROOM1;TRAK1;LMTK2;SPATA6;RAB6B;MLPH;RAB39B;TRIOBP;RAB27B;GSN;LARP6
+prerank,RNA Cap Binding (GO:0000339),0.47188620662781033,1.372147585345906,1.160542e-01,3.292122e-01,1.000000e+00,7/16,22.22%,LSM1;EIF3D;EIF4A1;CYFIP1;SNUPN;EIF4E2;EIF4E
+prerank,Nuclear Thyroid Hormone Receptor Binding (GO:0046966),-0.41683142815010654,-1.370969281799061,9.800000e-02,2.896785e-01,1.000000e+00,12/26,24.02%,NCOA6;MED13;MED12;MED30;JMJD1C;NCOA3;MED22;HMGN3;TRIP6;TRIP12;TAF7;MED1
+prerank,GTP Binding (GO:0005525),0.3032555090118231,1.3690323560118711,3.976143e-02,3.253804e-01,1.000000e+00,23/125,11.26%,TUBG1;TGM2;ARL2;GLUD1;EIF2B2;RAC1;RHOA;TUBA1B;TUBA1C;ANXA6;RAB32;RAB1B;RABL3;NME1;LSG1;RHOG;ARF1;RHOD;DRG1;RAN;TUBB3;SEPHS1;RAB25
+prerank,Metalloexopeptidase Activity (GO:0008235),0.4208702446788907,1.3623142988177055,9.375000e-02,3.293779e-01,1.000000e+00,14/26,23.26%,ZMPSTE24;MMP14;ERAP2;PEPD;RNPEP;CPE;FOLH1;METAP2;AGBL5;XPNPEP1;NPEPPS;METAP1;CPQ;XPNPEP3
+prerank,S-adenosylmethionine-dependent Methyltransferase Activity (GO:0008757),0.39062960604339786,1.3588139725045172,1.008230e-01,3.273360e-01,1.000000e+00,17/37,27.03%,DPH5;METTL9;GAMT;SMYD2;COMT;LRTOMT;TRMT2B;HNMT;PCMT1;LCMT1;RRP8;THUMPD3;FBL;AS3MT;SETD3;METTL4;METTL2B
+prerank,Serine-Type Peptidase Activity (GO:0008236),0.3939383428306241,1.3423049657997064,9.148936e-02,3.483938e-01,1.000000e+00,15/32,33.38%,CAPN5;CFD;MMP14;PRSS8;SEC11A;APEH;CLPP;PCSK6;PRSS21;HTRA2;FURIN;SEC11C;TPP1;CTSH;KLK3
+prerank,DNA-binding Transcription Factor Binding (GO:0140297),-0.27882446564117946,-1.3361862412225203,3.294574e-02,3.441500e-01,1.000000e+00,45/183,17.92%,BEX1;MLXIPL;SMARCA1;ETS2;BHLHE40;FOS;JUN;KLF4;UBXN7;SETD1A;GATA2;TCERG1;MEF2C;DGKQ;HDAC4;CREBBP;YAP1;ZBTB17;CRTC2;EP300;PBXIP1;KAT2A;SPEN;SMAD3;BCL3;PPARD;HCFC1;PURA;KAT2B;TLE1;CRTC1;HES1;DAPK3;SIK1;ZMYND8;BCOR;FOXH1;TAF1;PRDM5;LDB1;PIAS2;NFYB;TBX3;MEF2D;MTA1
+prerank,Metal Ion Binding (GO:0046872),0.26736694236151887,1.324906337386927,1.348748e-02,3.720961e-01,1.000000e+00,70/237,23.47%,NUDT8;PON1;CETN2;PPP3CA;TGM2;SCGN;FARSB;CD320;PIR;PGM1;NEK6;PSPH;MVK;MICU1;ANXA6;ENDOG;TPM4;DCTPP1;NME1;CLGN;CALU;CALM3;DNASE1L2;PLK1;MYL12B;STK11;TPD52;APEX1;RAN;S100A16;ME1;CALR;FBLN1;VIL1;NUCB1;CALM2;IDH1;NUDT5;PRIM1;STIM1;CANX;IDH3A;HSP90B1;HMGCL;GCLC;IDH3G;CCDC47;MELK;PPP3R1;MYL12A;SDF4;DPM1;CANT1;ANXA5;ATP2A1;FBP1;YDJC;NDUFAB1;FARSA;PI4K2A;AIF1L;CISD3;EFHD2;CALM1;CLYBL;ABL1;CDH1;HACL1;SLC25A23;TRPM4
+prerank,Exonuclease Activity (GO:0004527),0.3916117032175272,1.3185033332402463,1.055662e-01,3.774903e-01,1.000000e+00,12/30,27.59%,EXO1;APEX1;EXOSC1;REXO1;RAD9A;EXOSC10;EXOSC7;CNOT7;EXOSC5;CNOT6;EXOSC2;XRN2
+prerank,Metalloendopeptidase Activity (GO:0004222),0.41109858754007833,1.3164941811087831,1.174089e-01,3.727134e-01,1.000000e+00,6/27,3.25%,ECE2;ZMPSTE24;MME;MMP14;IDE;MIPEP
+prerank,Manganese Ion Binding (GO:0030145),0.3801594654244063,1.3144760666579804,1.254980e-01,3.675453e-01,1.000000e+00,6/33,9.65%,NUDT8;ARG2;B4GALT1;ADPRM;GYG1;ME1
+prerank,RNA Polymerase II-specific DNA-binding Transcription Factor Binding (GO:0061629),-0.2809221627643598,-1.30692929817658,3.719008e-02,3.896671e-01,1.000000e+00,43/149,24.23%,BEX1;MLXIPL;SMARCA1;ETS2;BHLHE40;NCOA2;FOS;JUN;DLL1;KLF4;UBXN7;SETD1A;GATA2;TCERG1;MEF2C;HDAC4;CREBBP;EP300;SPEN;SMAD3;TRIP4;HES1;TAF1;GABARAPL1;NCOA3;LDB1;PIAS2;TBX3;MEF2D;MTA1;NRIP1;RBPJ;SIRT1;CDK5RAP3;ELK1;PDCD11;BAZ2A;CRY1;BBS10;CREB1;ID2;MED1;BCL10
+prerank,Ribosome Binding (GO:0043022),0.3273637911234821,1.3057866218424683,1.102204e-01,3.762765e-01,1.000000e+00,27/65,26.38%,C1QBP;EEF2;MRPS27;IFRD2;NME1;NPM1;UNG;OXA1L;RPSA;SEC61G;NCLN;EIF2S1;NAA15;NAA10;MRRF;TMEM223;CCDC47;SRP19;SRP68;TMEM147;EIF6;SBDS;LTN1;TMCO1;GUF1;ETF1;PTCD3
+prerank,Transcription Coregulator Binding (GO:0001221),-0.3269574125139573,-1.3022413072711427,9.960159e-02,3.892665e-01,1.000000e+00,18/62,17.71%,PER3;FOS;CHD6;GATA2;CCNT2;THRB;LEF1;CREBBP;ZBTB17;EP300;SMAD3;HDAC6;PPARD;WIZ;PHF1;CIT;EED;ATF7
+prerank,Cyclosporin A Binding (GO:0016018),0.4644163133112481,1.3002610606585778,1.465677e-01,3.789729e-01,1.000000e+00,5/15,4.74%,PPP3CA;PPIL1;PPIA;PPIC;PPIF
+prerank,Protein-Lysine N-methyltransferase Activity (GO:0016279),-0.3799264473130465,-1.2990335226404672,1.203156e-01,3.853829e-01,1.000000e+00,9/28,13.56%,KMT2D;KMT2A;SETD1B;SETD1A;KMT2C;KMT2B;VCPKMT;ASH1L;SETD5
+prerank,Phosphatidylinositol Binding (GO:0035091),-0.3212012292469649,-1.2949469296806169,9.533898e-02,3.830314e-01,1.000000e+00,27/63,30.05%,ITPR1;WDFY1;NUMA1;ITPR3;HIP1R;MCF2L;EXOC8;HIP1;FCHO2;DENND1B;PHF12;EEA1;SNX18;ZFYVE16;GRB7;DENND1C;SH3YL1;SNX21;SNX27;PLEKHF2;C2CD2L;ANKS1B;PITPNM1;PXK;APPL1;SCARB1;SNX4
+prerank,Guanyl Ribonucleotide Binding (GO:0032561),0.28289551299467824,1.2902569556894452,6.374502e-02,3.905199e-01,1.000000e+00,27/135,15.48%,TUBG1;TGM2;ARL2;GLUD1;EIF2B2;RAC1;RHOA;TUBA1B;TUBA1C;ANXA6;RAB32;RAB1B;RABL3;NME1;LSG1;RHOG;ARF1;RHOD;DRG1;RAN;TUBB3;SEPHS1;RAB25;GNA11;RAB5C;RALB;EEF1A1
+prerank,Transition Metal Ion Transmembrane Transporter Activity (GO:0046915),0.4036935765887064,1.285714413612371,1.411290e-01,3.922391e-01,1.000000e+00,8/24,19.20%,SLC39A3;SLC39A14;SLC30A6;SLC39A8;SLC39A1;SLC31A1;SLC11A1;SLC39A9
+prerank,Phospholipase Activity (GO:0004620),-0.376561237915107,-1.2845506108301914,1.380753e-01,3.931556e-01,1.000000e+00,6/31,12.49%,MGLL;PLCB1;PLA2G6;PLD2;PNPLA6;PLCG1
+prerank,Calcium Ion Binding (GO:0005509),0.286835451298021,1.2835150688083217,6.500956e-02,3.882185e-01,1.000000e+00,39/122,23.47%,PON1;CETN2;PPP3CA;TGM2;SCGN;CD320;MICU1;ANXA6;TPM4;CLGN;CALU;CALM3;DNASE1L2;MYL12B;TPD52;S100A16;CALR;FBLN1;VIL1;NUCB1;CALM2;STIM1;CANX;HSP90B1;CCDC47;MELK;PPP3R1;MYL12A;SDF4;CANT1;ANXA5;ATP2A1;NDUFAB1;AIF1L;EFHD2;CALM1;CDH1;SLC25A23;TRPM4
+prerank,Non-Membrane Spanning Protein Tyrosine Kinase Activity (GO:0004715),-0.42235855241473214,-1.2772250010723556,1.535270e-01,3.985817e-01,1.000000e+00,7/18,15.60%,CLK1;FRK;PTK2B;DYRK1A;YES1;TYK2;PTK6
+prerank,RNA Polymerase II Complex Binding (GO:0000993),-0.37838134993320105,-1.276826917235278,1.630648e-01,3.898734e-01,1.000000e+00,8/28,15.16%,UVSSA;ZNF326;SCAF8;ERCC5;BRD4;PCF11;RPRD2;NCOA3
+prerank,Nuclear Receptor Binding (GO:0016922),-0.298264840605906,-1.2737826846927658,9.494949e-02,3.866817e-01,1.000000e+00,30/85,24.02%,NCOA2;MED14;NCOA6;MED13;ASXL1;LEF1;ARID5A;EP300;KDM3A;MED12;SMAD3;MED30;TRIP4;JMJD1C;NR4A1;FOXH1;TAF1;NCOA3;TMF1;MED22;HMGN3;NRIP1;SIRT1;LATS1;TRIP6;BAZ2A;TRIP12;CRY1;TAF7;MED1
+prerank,Protein Serine/Threonine Kinase Activator Activity (GO:0043539),0.36647297664832373,1.273571767038374,1.401152e-01,3.999062e-01,1.000000e+00,13/33,24.45%,MAP2K2;CCNB1;CALM3;PARP8;CALM2;CKS1B;CAB39L;CKS2;MLST8;STRADB;CCNYL1;CALM1;CCND3
+prerank,Pyrophosphatase Activity (GO:0016462),0.36454760446302625,1.26927158403638,1.361789e-01,4.004473e-01,1.000000e+00,8/32,11.47%,NTPCR;LHPP;DCTPP1;DOLPP1;ADPRM;PPA1;PPA2;NUDT5
+prerank,Neutral L-amino Acid Transmembrane Transporter Activity (GO:0015175),-0.42648117813161035,-1.2677706220224545,1.791908e-01,3.896671e-01,1.000000e+00,3/17,4.25%,SLC6A6;SFXN3;SLC3A2
+prerank,Histone Deacetylase Binding (GO:0042826),-0.3124408057208764,-1.2634395257751814,1.240000e-01,3.893175e-01,1.000000e+00,18/62,17.92%,HSPA1A;HSPA1B;MEF2C;NACC2;LEF1;HDAC4;HDAC10;KAT2A;HDAC6;BCL3;KAT2B;HES1;BCOR;NCOR2;AKAP8L;MAGEA11;MEF2D;MTA1
+prerank,N-methyltransferase Activity (GO:0008170),0.42597040406901227,1.2624772639122297,1.774194e-01,4.075070e-01,1.000000e+00,9/18,24.89%,METTL9;SMYD2;TFB2M;HNMT;DIMT1;THUMPD3;PRMT1;TFB1M;SETD3
+prerank,DNA Binding (GO:0003677),-0.23437666662822879,-1.252119488776271,1.587302e-02,4.046463e-01,1.000000e+00,106/482,17.37%,SATB1;MBD6;KMT2D;SOX8;SNAPC4;MLXIPL;SMARCA1;ETS2;NUPR1;MAFF;JUN;ZNF84;STON1;TOX3;MSH5;ARID4A;CSRNP1;SMARCA2;ZNF395;CHD6;DDX60;CHD2;FOXO3;PRDM2;SOX13;CHD3;ZNF292;FMR1;ZGPAT;MORC3;SOX9;POU2F1;TIGD7;THRB;LEF1;HDAC4;CREBBP;MYBBP1A;ZNF219;SAFB2;ERCC5;DDX3X;ARID5A;IRF6;EP300;CREBZF;MAU2;KDM3A;SLTM;RBM5;CAMSAP3;SMAD3;ZMYM6;NPAS2;ELK4;FOXL2;TSHZ1;PPARD;CHTF18;RYBP;ZNF24;PURA;JUNB;KDM6B;KDM6A;ZNF513;CALCOCO1;HES1;ZNF263;FOXJ3;JMJD1C;KDM5B;ILF3;NR4A1;TOPORS;MCM9;SOX12;KDM2B;CRY2;PATZ1;FAM111A;FOXH1;HMGB2;CSRNP2;NCBP2;TAF1;ZNF638;ZNF148;LRRFIP1;TOP3A;PRDM5;NR1H2;POLG2;CDKN2AIP;SPTY2D1;ZBTB22;DDB2;ZBTB4;ZNF496;NFYB;PHF1;DDX11;TBX3;XRN1;SP4;POLE
+prerank,Damaged DNA Binding (GO:0003684),0.34612550296415084,1.2507960562409723,1.477733e-01,4.241836e-01,1.000000e+00,25/40,37.35%,AUNIP;PCNA;PARP1;DCLRE1A;APTX;UNG;RPA1;RPS3;SMC6;RAD18;RPA3;NTHL1;ERCC2;ERCC3;SIRT6;TDG;OGG1;POLQ;XPC;MPG;RPA2;XPA;PNKP;NBN;FANCG
+prerank,Signaling Receptor Complex Adaptor Activity (GO:0030159),-0.3875873074434585,-1.2502612359012777,1.713710e-01,4.002477e-01,1.000000e+00,8/25,18.55%,MAPK8IP3;NCOA2;DLG5;TRADD;SHANK2;FRS2;SH2B1;SPAG9
+prerank,Serine-Type Endopeptidase Activity (GO:0004252),0.3863321467339528,1.249897623277348,1.461864e-01,4.178736e-01,1.000000e+00,10/25,26.81%,CFD;MMP14;SEC11A;APEH;CLPP;PCSK6;PRSS21;HTRA2;FURIN;SEC11C
+prerank,NF-kappaB Binding (GO:0051059),0.38541258382987154,1.2412395264644147,1.744422e-01,4.282792e-01,1.000000e+00,9/25,28.96%,COMMD7;FAF1;NPM1;HDAC1;PSMA6;HDAC2;RNF25;HDAC3;ANXA4
+prerank,3'-5' Exonuclease Activity (GO:0008408),0.35695496391204484,1.2403343407198069,1.676301e-01,4.227858e-01,1.000000e+00,12/31,27.59%,ERI3;POLRMT;APEX1;TOE1;RAD9A;EXOSC10;TATDN1;EXOSC7;CNOT7;EXOSC5;EXOSC2;XRN2
+prerank,Growth Factor Receptor Binding (GO:0070851),-0.35864456800873024,-1.237072191701253,1.529412e-01,4.182062e-01,1.000000e+00,11/32,18.24%,VEGFA;ERN1;TNK2;HIP1;ATXN2;GLMN;IL6R;EGF;FRS2;SDCBP;IL6ST
+prerank,N-acetyltransferase Activity (GO:0008080),-0.44570721985566514,-1.2369953807411922,1.957774e-01,4.098016e-01,1.000000e+00,5/15,11.51%,NAT14;ATAT1;CREBBP;EP300;KAT2B
+prerank,DNA Polymerase Binding (GO:0070182),0.413441668674342,1.2348239983808194,1.872510e-01,4.275406e-01,1.000000e+00,8/18,25.28%,PCNA;NABP2;HSP90AB1;CDK2AP1;LONP1;RAD51;CDT1;FANCI
+prerank,Iron Ion Binding (GO:0005506),0.3464040789721767,1.2253846609743957,1.866667e-01,4.398680e-01,1.000000e+00,11/34,16.97%,ACO2;ALKBH3;ISCU;ALKBH1;ETHE1;CIAPIN1;FBXL5;FECH;ISCA2;NFU1;ACP5
+prerank,G Protein-Coupled Receptor Binding (GO:0001664),-0.32503051471981037,-1.2223374192484737,1.580000e-01,4.317210e-01,1.000000e+00,16/50,16.40%,ADM;HSPA1A;HSPA1B;S100A14;FZD1;RNF43;BAMBI;ZNRF3;USP20;PTCH1;ARHGEF1;LRP6;GNAI1;HOMER3;PICK1;SDCBP
+prerank,2-Oxoglutarate-Dependent Dioxygenase Activity (GO:0016706),-0.36227546064086313,-1.2168181828003093,1.912682e-01,4.345401e-01,1.000000e+00,9/28,16.74%,KDM3A;PHF8;KDM6B;KDM6A;KDM2A;KDM5B;KDM2B;TET3;PHF1
+prerank,mRNA 5'-UTR Binding (GO:0048027),0.3877600310955373,1.213312927129759,1.857708e-01,4.589005e-01,1.000000e+00,9/21,21.82%,RPL26;RPS14;MRPS11;SHMT1;RPS13;RPL5;RPS7;UTP23;RPS3A
+prerank,Monoatomic Cation Channel Activity (GO:0005261),-0.3423619437908346,-1.2106191588133697,1.971253e-01,4.391450e-01,1.000000e+00,8/37,9.59%,SCNN1G;TRPC1;ASIC3;PKD1;CACNA1D;PIEZO1;SLC24A5;GRIN1
+prerank,Protein Serine/Threonine Kinase Activity (GO:0004674),-0.24470753252982003,-1.2057975541611319,8.113590e-02,4.414079e-01,1.000000e+00,77/238,25.67%,MAP3K1;ERN1;RPS6KA5;MAP3K9;WNK4;CLK1;SMG1;CAMKK1;PRKCA;ACVR1B;PAK6;PLK2;MINK1;TGFBR1;PRKAA2;MAP4K5;MOK;ATM;MAP3K2;MKNK1;MAP3K8;CDKL1;MAP4K3;DYRK3;LMTK2;NRBP2;PTK2B;BRD4;PIM3;TLK1;UHMK1;MAST2;MAPKAPK2;DYRK1A;DAPK3;MAPK15;SIK1;PRKAB2;ULK3;ULK1;PIM1;PRKAA1;WNK2;TAF1;MAP3K3;ROCK1;CDK11A;MAPK11;PDPK1;DYRK2;NEK7;CIT;CDC42BPG;MAP3K7;CAMK2B;CLK2;LATS1;CAMK2G;HIPK3;CLK4;PPM1D;CDK11B;LIMK2;TAOK2;HIPK1;PRKD2;PRKACB;CDC42BPA;CDK10;MAPK7;CSNK1E;DAPK2;TESK1;EIF2AK2;PKN2;CDK3;SQSTM1
+prerank,Ubiquitin-Like Protein Ligase Binding (GO:0044389),0.2476052488273688,1.2054016790509525,9.393346e-02,4.682614e-01,1.000000e+00,54/222,18.44%,MID1;UBE2T;PACRG;HSPA8;SLC25A5;UQCRC1;RPS27A;UBE2C;UCHL1;NEK6;TUBA1B;CCNB1;PSMD1;HSPBP1;TXNIP;TPI1;UBB;SCAMP3;CUL1;RNF34;NEDD8;FAF1;TMBIM6;LRPPRC;TP53;YWHAE;CUL2;HSPA9;TCP1;HSP90AB1;CALR;BRCA1;UBE2L3;UBE2N;PRR7;SMC6;SLC22A18;PA2G4;HM13;NDUFS2;XRCC5;UBA52;CHEK2;RALB;PSMA3;VCP;RAD18;RPL5;JKAMP;PRDX6;ARRDC1;GABARAPL2;EIF4E2;DDRGK1
+prerank,Single-Stranded DNA Binding (GO:0003697),0.29359783950217655,1.2040708192508403,1.666667e-01,4.638279e-01,1.000000e+00,27/76,25.51%,CDC45;SETMAR;POLR2G;RAD51B;NABP2;RPA1;MCM6;RAD23A;SAMHD1;SMC6;WDR48;RAD51AP1;MCM2;MCM4;MCM5;POLR2H;POLA1;SUB1;MCM10;MCM3;RPA3;LONP1;TDP1;RAD51;MLH1;HSPD1;MCM7
+prerank,Purine Ribonucleoside Triphosphate Binding (GO:0035639),0.23980590303768756,1.203297287879436,8.333333e-02,4.582072e-01,1.000000e+00,43/305,11.26%,ABCB1;HSPA8;TUBG1;TGM2;ARL2;GLUD1;EIF2B2;RAC1;OLA1;RHOA;NEK6;TUBA1B;TUBA1C;IDE;MVK;ANXA6;RAB32;ABCF2;YARS2;RAB1B;RABL3;NME1;LSG1;RHOG;ARF1;HSPA4;EIF4A3;RHOD;PLK1;ATP1A1;STK11;DRG1;RAN;DTYMK;HSP90AB1;MCM6;DARS2;ABCB6;TUBB3;MTHFD1L;STK17A;SEPHS1;RAB25
+prerank,Chloride Channel Activity (GO:0005254),-0.3882840297660979,-1.1979578497363095,2.045455e-01,4.505116e-01,1.000000e+00,7/21,15.53%,GABRA2;ANO9;CLCN6;ANO8;CLCN7;CLCN2;GABRA4
+prerank,Amino Acid Transmembrane Transporter Activity (GO:0015171),-0.38210624269024346,-1.1954020075309404,2.479839e-01,4.482736e-01,1.000000e+00,5/20,14.73%,SLC6A6;SLC25A29;SLC3A2;SLC38A11;SLC7A11
+prerank,Ubiquitin Conjugating Enzyme Binding (GO:0031624),-0.4041940900732535,-1.1939460210030473,2.083333e-01,4.434609e-01,1.000000e+00,8/18,26.72%,ZMYM2;DCUN1D4;FOXL2;RNF144B;SIAH1;DCUN1D2;ARIH1;RNF19A
+prerank,RNA Polymerase Core Enzyme Binding (GO:0043175),-0.3499071214177481,-1.190141518468626,2.284569e-01,4.438732e-01,1.000000e+00,12/29,25.69%,UVSSA;ZNF326;SCAF8;ERCC5;PCF11;RPRD2;NCOA3;SPTY2D1;CCAR2;ERBB2;CTR9;RPRD1B
+prerank,Cell-Cell Adhesion Mediator Activity (GO:0098632),-0.3743893757405443,-1.184776968309868,2.391753e-01,4.474477e-01,1.000000e+00,5/21,8.79%,STXBP6;CLSTN3;CNN3;IGSF9;BAIAP2L1
+prerank,Calcium Channel Regulator Activity (GO:0005246),-0.41749177624960665,-1.1825106139259767,2.583333e-01,4.450268e-01,1.000000e+00,3/15,5.92%,ITPR1;GEM;SLC30A1
+prerank,NAD+ ADP-ribosyltransferase Activity (GO:0003950),0.3874144970487544,1.170525867922783,2.607076e-01,5.255179e-01,1.000000e+00,3/19,9.63%,PARP4;PARP1;PARP8
+prerank,RNA Polymerase Binding (GO:0070063),-0.415280639743562,-1.1645822182687267,2.550607e-01,4.759760e-01,1.000000e+00,5/15,10.46%,PABPN1;TCERG1;CCNT2;SCAF8;PHRF1
+prerank,tRNA Binding (GO:0000049),0.3340496173251406,1.1626234453982103,2.343434e-01,5.366040e-01,1.000000e+00,11/36,16.28%,MRPS27;YARS2;ELP5;ALKBH1;EIF2S1;YRDC;DARS2;EIF2S3;PTCD1;EEF1A1;HSD17B10
+prerank,Amino Acid Binding (GO:0016597),0.38352678043874744,1.1610288349883275,2.531915e-01,5.322761e-01,1.000000e+00,2/19,1.64%,GRIN3A;GLUD1
+prerank,Ubiquitin Protein Ligase Binding (GO:0031625),0.24075467710673404,1.1607209887063303,1.489362e-01,5.248992e-01,1.000000e+00,50/208,18.42%,MID1;UBE2T;PACRG;HSPA8;SLC25A5;UQCRC1;RPS27A;UCHL1;NEK6;TUBA1B;PSMD1;HSPBP1;TXNIP;TPI1;UBB;SCAMP3;CUL1;RNF34;NEDD8;FAF1;TMBIM6;LRPPRC;TP53;YWHAE;CUL2;HSPA9;TCP1;HSP90AB1;CALR;BRCA1;UBE2L3;UBE2N;SMC6;SLC22A18;PA2G4;HM13;NDUFS2;XRCC5;UBA52;CHEK2;RALB;PSMA3;VCP;RAD18;RPL5;JKAMP;PRDX6;ARRDC1;GABARAPL2;EIF4E2
+prerank,Calcium Ion Transmembrane Transporter Activity (GO:0015085),-0.34272216576562664,-1.1544305370266983,2.371134e-01,4.897480e-01,1.000000e+00,8/32,12.74%,TRPC1;ITPR1;PKD1;CACNA1D;SLC24A5;TMEM165;GRIN1;ATP2C2
+prerank,Ubiquitin-Like Protein Conjugating Enzyme Activity (GO:0061650),0.3336046158361977,1.1537303126847998,2.254697e-01,5.334603e-01,1.000000e+00,14/32,30.72%,UBE2T;UBE2C;UFC1;CDC34;UBE2L3;UBE2N;UBE2I;UBE2J2;UBE2G1;UBE2S;UBE2R2;UBE2J1;UBE2F;UBE2E2
+prerank,Ubiquitin-Protein Transferase Activity (GO:0004842),-0.22756235250756685,-1.1432653993054742,1.465863e-01,5.060766e-01,1.000000e+00,98/274,29.48%,UBE2L6;TRIM54;RNF216;MYLIP;CBL;TRIM45;TRIM52;LONRF2;LNX2;LRSAM1;MDM4;NEURL4;RNF43;RNF44;RNF213;CUL9;ZNRF3;ZNF598;UBR3;HECTD2;BIRC3;KLHL42;MIB2;RNF144B;RNF38;TOPORS;RC3H1;MDM2;ANAPC4;TRIM14;BCOR;DTX2;FBXO2;CCAR1;NHLRC3;TAF1;TRIM23;HERC2;RBBP6;HECTD1;TTC3;TRIM15;TRIM25;MALT1;TRAF3;DDB2;PJA2;MIB1;UBE2O;NEURL1B;FBXO44;RLIM;TRIM2;PPIL2;LONRF1;TRIM33;TRIM26;GID4;BIRC2;HERC4;FBXW2;SIAH1;RNFT1;UBE2D1;TRIM7;KLHL21;FANCL;NEDD4L;ANKIB1;SHPRH;KCTD13;RNF146;TRIP12;FBXO11;TRIM24;RFFL;UBE3B;ARIH1;BFAR;LNX1;LMO7;RNF19A;RNF6;RNF214;FBXO3;UBR5;CUL4A;KLHL9;TRIM5;IRF2BPL;UBE2G2;SYVN1;PEX12;TRIM39;CBLB;VPS11;MSL2;RNF111
+prerank,Nucleosomal DNA Binding (GO:0031492),0.3939664574153741,1.1384367450718733,2.751004e-01,5.624781e-01,1.000000e+00,8/17,27.05%,MBD3;RCC1;SMARCD2;HDAC1;HDAC2;SMARCB1;MBD2;SMARCC1
+prerank,Chloride Transmembrane Transporter Activity (GO:0015108),-0.3658276104052348,-1.1367601726053844,2.896282e-01,5.120571e-01,1.000000e+00,6/21,13.58%,SLC12A9;ANO9;SLC26A2;CLCN6;ANO8;CLCN7
+prerank,GTPase Binding (GO:0051020),-0.24217725697365244,-1.128917265278974,1.959184e-01,5.219264e-01,1.000000e+00,41/158,21.15%,CHML;RHOBTB3;SORL1;MYO5B;SPTBN1;EXPH5;RILPL1;SGSM2;NOXA1;WASF1;MYO5A;RAB11FIP4;EXOC8;GCC2;ARHGEF2;DENND5A;ABI2;BNIP3;BICD2;RABGAP1;FNBP1L;DAPK3;RIN2;RAPGEF6;ULK1;RANBP2;DMXL2;EXOC5;ATG14;MLPH;TRIOBP;CHM;RASA1;OCRL;LZTR1;DENND5B;TSC2;GGA2;WHAMM;VPS9D1;RAB11FIP3
+prerank,Endopeptidase Activity (GO:0004175),0.25128964731401715,1.1240285430082393,2.170385e-01,5.896890e-01,1.000000e+00,22/123,13.84%,ECE2;ZMPSTE24;MME;CAPN5;CFD;CTSZ;MMP14;UCHL1;IDE;MIPEP;ERAP2;USP18;USP5;CTSB;PITRM1;SEC11A;APEH;CTSD;CASP4;CLPP;PSMB7;THOP1
+prerank,Small GTPase Binding (GO:0031267),-0.24560476431923292,-1.121705658961582,2.069672e-01,5.314780e-01,1.000000e+00,36/138,21.15%,CHML;RHOBTB3;SORL1;MYO5B;EXPH5;RILPL1;SGSM2;NOXA1;WASF1;MYO5A;RAB11FIP4;EXOC8;GCC2;ARHGEF2;DENND5A;ABI2;BICD2;RABGAP1;DAPK3;RIN2;RAPGEF6;ULK1;RANBP2;DMXL2;EXOC5;MLPH;TRIOBP;CHM;OCRL;LZTR1;DENND5B;TSC2;GGA2;WHAMM;VPS9D1;RAB11FIP3
+prerank,Kinase Activator Activity (GO:0019209),-0.3358488189438078,-1.1202762473872419,2.859961e-01,5.268247e-01,1.000000e+00,7/26,20.89%,MT3;BMPR2;MOB1B;GPRC5C;MALT1;PDE8A;SPDYA
+prerank,Poly-Purine Tract Binding (GO:0070717),-0.36626422310921625,-1.117273702580473,3.099415e-01,5.260266e-01,1.000000e+00,5/19,11.37%,PABPC1L;FMR1;PABPN1;DDX3X;HNRNPDL
+prerank,Cadherin Binding (GO:0045296),0.2252876757660796,1.1143652416746448,1.814516e-01,6.072125e-01,1.000000e+00,68/252,23.24%,CNN2;ANK3;PDLIM5;BSG;HSPA8;EEF2;SLC9A3R2;RPL23A;CCT8;PPP1CA;OLA1;ATIC;LRRC59;SFN;LAD1;PFN1;SND1;CAPZB;STK24;PTPRJ;NOP56;YWHAE;RPL24;RPL14;PRDX1;RANBP1;EIF2S1;RAN;HDLBP;HSP90AB1;AHSA1;PAICS;IDH1;GLOD4;SNX5;CAPG;ZC3H15;EIF2S3;VAPB;YWHAB;RPS26;CCNB2;RUVBL1;PCMT1;TAGLN2;CALD1;BAG3;PRDX6;STX5;PKP2;CORO1B;PDLIM1;RPL7A;PKP4;BZW2;CKAP5;DIAPH3;EMD;EHD4;P2RX4;PPME1;ARHGAP1;EFHD2;PARVA;EPS8L1;BZW1;PUF60;CDH1
+prerank,SH3 Domain Binding (GO:0017124),-0.32246352104745574,-1.1143645360228969,2.807377e-01,5.252116e-01,1.000000e+00,16/32,30.23%,CBL;NOXA1;ARHGAP27;SH3BP2;ABI2;MAPK15;ENAH;PTPN12;KHDRBS1;CRK;CD2AP;VASP;DNM2;CBLB;CRB3;ESPN
+prerank,Beta-Tubulin Binding (GO:0048487),0.34446322890034375,1.1076448987703293,3.202358e-01,6.170972e-01,1.000000e+00,11/26,24.25%,PACRG;LRPPRC;CCT5;VAPB;RACGAP1;GABARAPL2;TBCD;UXT;EMD;BBS4;PEX14
+prerank,Protein Heterodimerization Activity (GO:0046982),0.24931198865258472,1.1062503917064397,2.549020e-01,6.122304e-01,1.000000e+00,20/110,12.53%,ATP1B1;TCF3;AURKA;PHB2;PEF1;MICU1;TPM4;TP53;YWHAE;ATP1A1;RCC1;CHUK;RAN;AGTR1;PPP2R1A;SUPT4H1;SLC3A1;EXT2;SAE1;VAPB
+prerank,Magnesium Ion Binding (GO:0000287),0.2512974398351842,1.0922831566936473,2.741617e-01,6.419081e-01,1.000000e+00,20/100,15.92%,NUDT8;FARSB;PGM1;NEK6;PSPH;MVK;ENDOG;DCTPP1;NME1;PLK1;STK11;RAN;ME1;IDH1;NUDT5;PRIM1;IDH3A;HMGCL;GCLC;IDH3G
+prerank,Histone H4 Acetyltransferase Activity (GO:0010485),-0.3608396398743253,-1.092116970303349,3.392857e-01,5.709737e-01,1.000000e+00,9/18,29.68%,NAA40;EP300;BRD1;NAA50;KAT7;BRPF1;BRCA2;BRPF3;ING3
+prerank,Zinc Ion Binding (GO:0008270),-0.2248389634497912,-1.0896772948559086,2.617188e-01,5.686931e-01,1.000000e+00,42/205,17.63%,MT3;ENPP5;ALKBH8;TRIM54;ADH1B;ZNF84;KMT2A;WDFY1;KLF4;CRIP1;FNTB;QPCT;ECE1;PRDM2;CLIP1;MDM4;CHD3;ZMYM2;D2HGDH;HDAC4;HDAC10;KMT2B;PHF8;SMAD3;ARHGEF2;KDM2A;KDM5B;ZMYND8;RC3H1;MDM2;KDM2B;TET3;S100A13;EEA1;PTGR2;CYLD;IKZF5;PHF1;ZNF117;TRIM2;SEC23A;KDM5C
+prerank,Telomerase RNA Binding (GO:0070034),0.374140931561045,1.087018780943914,3.313492e-01,6.478493e-01,1.000000e+00,7/18,23.91%,NOP10;SNRPD3;SNRPB;NHP2;DKC1;EXOSC10;TNIP1
+prerank,Single-Stranded RNA Binding (GO:0003727),-0.31648472088492435,-1.0854560052896935,3.301527e-01,5.701633e-01,1.000000e+00,15/33,29.63%,DDX60;FMR1;SOX9;AGO1;PUS1;DDX3X;ILF3;RBM7;DDX11;IFIT5;DDX60L;FXR1;IGHMBP2;AGO4;AGO3
+prerank,"Acyltransferase Activity, Transferring Groups Other Than Amino-Acyl Groups (GO:0016747)",0.30086084230397736,1.084271577131825,3.339844e-01,6.465438e-01,1.000000e+00,15/41,28.45%,MBOAT2;ZDHHC16;NAA15;NAA10;ZDHHC14;ZDHHC3;ZDHHC6;GTF2B;MCAT;SIRT6;ZDHHC12;KAT6A;SIRT2;LPCAT3;NMT1
+prerank,Endopeptidase Inhibitor Activity (GO:0004866),0.30905523699433535,1.0822794209028115,3.459119e-01,6.435369e-01,1.000000e+00,9/32,16.55%,APP;TIMP1;PTTG1;CST3;PCSK1N;APLP2;SERPINB6;CSTB;GAPDH
+prerank,Protein Serine/Threonine Kinase Inhibitor Activity (GO:0030291),-0.3356316525121773,-1.0795555744272138,3.488372e-01,5.760769e-01,1.000000e+00,9/23,24.84%,PPP1R1B;CDKN1B;KAT2B;HEXIM1;CIT;CDKN1A;YWHAG;HEXIM2;PRKAR1A
+prerank,snRNA Binding (GO:0017069),0.3000658746404492,1.0705132326138769,3.390805e-01,6.669456e-01,1.000000e+00,12/36,22.44%,LSM10;SNRPD3;PRPF4;EIF5A;SNRPA1;LSM2;LSM4;LSM7;TOE1;EFTUD2;SNRPB2;PRPF31
+prerank,Hexosyltransferase Activity (GO:0016758),0.28622792486952386,1.0603483893729155,3.301708e-01,6.866674e-01,1.000000e+00,12/44,17.22%,UGT2B15;B4GALT1;ALG1;GYG1;ALG5;POFUT1;EXT2;ALG12;PIGV;B4GALT3;HAS3;MGAT4A
+prerank,Flavin Adenine Dinucleotide Binding (GO:0050660),0.3008998302938652,1.0572492475037887,3.614458e-01,6.860421e-01,1.000000e+00,17/34,31.18%,NQO2;KDM1A;AIFM1;SDHA;GCDH;ETFDH;TXNRD1;AIFM2;ACOX3;POR;GSR;CYB5R1;SQLE;DLD;SORD;ETFA;PCYOX1
+prerank,Adenyl Ribonucleotide Binding (GO:0032559),0.22046648927525447,1.0557072675160164,3.300589e-01,6.816364e-01,1.000000e+00,25/196,11.03%,ABCB1;HSPA8;GLUD1;EIF2B2;OLA1;NEK6;IDE;MVK;ABCF2;YARS2;NME1;HMGCR;HSPA4;EIF4A3;PLK1;ATP1A1;STK11;DTYMK;HSP90AB1;MCM6;ME1;DARS2;ABCB6;MTHFD1L;STK17A
+prerank,Histone Deacetylase Activity (GO:0004407),-0.36965019469622895,-1.053376148467481,3.852814e-01,6.333773e-01,1.000000e+00,5/15,20.46%,HDAC4;HDAC10;HDAC6;SIRT1;MIER1
+prerank,Basal RNA Polymerase II Transcription Machinery Binding (GO:0001099),-0.2996468775387649,-1.052044682727947,3.769841e-01,6.283553e-01,1.000000e+00,8/33,15.16%,UVSSA;ZNF326;SCAF8;ERCC5;PCF11;TAF1;RPRD2;NCOA3
+prerank,Protease Binding (GO:0002020),0.2602167643370878,1.0484191942410896,3.619247e-01,6.940186e-01,1.000000e+00,14/63,15.50%,TIMP1;RPS27A;BANK1;CST3;DERL3;TP53;ADRM1;RAD23A;SERPINB6;STIM1;F2RL1;CSTB;RIPK2;VCP
+prerank,mRNA 3'-UTR AU-rich Region Binding (GO:0035925),0.3602918741848197,1.0463968736571883,3.933747e-01,6.914162e-01,1.000000e+00,1/16,0.21%,MEX3D
+prerank,UDP-glycosyltransferase Activity (GO:0008194),0.33404955000426345,1.0459191568867476,3.761996e-01,6.844525e-01,1.000000e+00,5/20,17.22%,UGT2B15;B4GALT1;EXT2;HAS3;MGAT4A
+prerank,Regulatory RNA Binding (GO:0061980),-0.3152934360702782,-1.03807498711017,3.975904e-01,6.566289e-01,1.000000e+00,5/25,17.54%,FMR1;RC3H1;DICER1;FAM172A;ZC3H7B
+prerank,Syntaxin Binding (GO:0019905),-0.2934720837423784,-1.0344783140796712,3.913043e-01,6.570854e-01,1.000000e+00,9/32,20.73%,VAMP2;BAIAP3;STXBP3;GOLGA2;SNPH;STX16;STX6;STXBP1;BLOC1S6
+prerank,Cysteine-Type Endopeptidase Activity (GO:0004197),0.2613989307573587,1.0325545193723713,3.638211e-01,7.124690e-01,1.000000e+00,10/57,13.30%,CAPN5;CTSZ;UCHL1;USP18;CAPN2;USP5;CTSB;CAPNS1;CTSD;CASP4
+prerank,ATP Binding (GO:0005524),0.21645914900131044,1.027932120911006,3.870334e-01,7.171709e-01,1.000000e+00,22/185,11.03%,ABCB1;HSPA8;EIF2B2;OLA1;NEK6;IDE;MVK;ABCF2;YARS2;NME1;HSPA4;EIF4A3;PLK1;ATP1A1;STK11;DTYMK;HSP90AB1;MCM6;DARS2;ABCB6;MTHFD1L;STK17A
+prerank,G Protein-Coupled Receptor Activity (GO:0004930),-0.3393572920522201,-1.0195542821531645,4.087302e-01,6.891670e-01,1.000000e+00,3/19,7.58%,GABBR1;RORB;PTGDR2
+prerank,Protein Serine/Threonine/Tyrosine Kinase Activity (GO:0004712),0.34311841921091635,1.0109953664093827,4.463158e-01,7.554061e-01,1.000000e+00,6/19,14.40%,MAP2K2;AURKA;RPS6KA1;AURKB;MAPKAPK5;TTK
+prerank,Dicarboxylic Acid Transmembrane Transporter Activity (GO:0005310),0.35050958366110535,1.0091096543785538,4.409006e-01,7.526367e-01,1.000000e+00,8/15,31.21%,SLC25A10;SLC25A11;SLC1A4;SLC16A1;UCP2;SLC46A1;SLC1A5;SLC26A6
+prerank,Ubiquitin-Like Protein Conjugating Enzyme Binding (GO:0044390),-0.3129479707419396,-1.0087231334951432,4.277457e-01,7.092360e-01,1.000000e+00,9/24,26.72%,ZMYM2;TCERG1;DCUN1D4;FOXL2;RNF144B;SIAH1;DCUN1D2;ARIH1;RNF19A
+prerank,PDZ Domain Binding (GO:0030165),-0.2983549500257717,-1.0083153023982938,4.411765e-01,7.013667e-01,1.000000e+00,9/31,19.68%,CXADR;KIDINS220;FZD1;CADM1;CRIM1;KIF14;SYNJ2;CIT;PLEKHA1
+prerank,Ubiquitin Conjugating Enzyme Activity (GO:0061631),0.2923653085481816,0.9980983052724707,4.510978e-01,7.761743e-01,1.000000e+00,5/29,10.12%,UBE2T;UBE2C;CDC34;UBE2L3;UBE2N
+prerank,Gamma-Tubulin Binding (GO:0043015),-0.33145631832749556,-0.996983296939675,4.417671e-01,7.234264e-01,1.000000e+00,8/18,26.20%,TUBGCP3;DDX3X;DIXDC1;WASH4P;BRCA2;TUBGCP6;OFD1;NDRG1
+prerank,Protein Kinase A Regulatory Subunit Binding (GO:0034237),-0.34108130954453264,-0.9953542124590491,4.470135e-01,7.190328e-01,1.000000e+00,11/16,38.74%,WASF1;AKAP8L;PJA2;PRRC1;ARFGEF2;ARFGEF1;AKAP1;EZR;RYR2;AKAP7;WASF2
+prerank,Kinesin Binding (GO:0019894),-0.3163412118157054,-0.9944252401622821,4.772277e-01,7.125442e-01,1.000000e+00,8/22,20.45%,SPTBN5;MAPK8IP3;CROCC;AP1AR;KLC4;SPAG9;KLC2;IFT88
+prerank,RNA Endonuclease Activity (GO:0004521),-0.30946027233482093,-0.9928763653830709,4.654832e-01,7.081459e-01,1.000000e+00,3/22,6.30%,ERN1;ANKZF1;SMG6
+prerank,Ubiquitin-Like Protein Transferase Activity (GO:0019787),-0.2062200889757384,-0.9866697975098179,4.941176e-01,7.164146e-01,1.000000e+00,48/190,22.71%,UBE2L6;MYLIP;CBX4;CBL;LNX2;LRSAM1;MDM4;RNF43;RNF213;HDAC4;ZNRF3;PIAS1;UBR3;BIRC3;KLHL42;MIB2;RNF144B;TOPORS;RC3H1;MDM2;ANAPC4;BCOR;FBXO2;TRIM23;RANBP2;RBBP6;TTC3;TRIM25;MALT1;TRAF3;DDB2;PIAS2;PJA2;MIB1;UBE2O;RLIM;TRIM2;TRIM33;BIRC2;FBXW2;SIAH1;UBE2D1;KLHL21;FANCL;NEDD4L;SHPRH;KCTD13;RNF146
+prerank,Endopeptidase Regulator Activity (GO:0061135),-0.3183363084248406,-0.979379911875803,4.566116e-01,7.274286e-01,1.000000e+00,2/20,1.22%,SPINK1;ABCA2
+prerank,Nucleosome Binding (GO:0031491),0.27102364913869403,0.9760373388723583,4.871795e-01,8.317330e-01,1.000000e+00,14/41,29.17%,ZNHIT1;MBD3;PARP1;RCC1;SSRP1;SMARCD2;HDAC1;HDAC2;SMARCB1;SIRT6;GLYR1;MBD2;SMARCC1;DNTTIP1
+prerank,Transcription Corepressor Binding (GO:0001222),-0.29032689149792656,-0.9750804376135404,4.870775e-01,7.305933e-01,1.000000e+00,11/26,29.12%,PER3;LEF1;HDAC6;WIZ;PHF1;EED;SUZ12;CNOT2;STAT1;EHMT1;USP11
+prerank,Cadherin Binding Involved In Cell-Cell Adhesion (GO:0098641),-0.32983781219127417,-0.9713969683710024,5.062500e-01,7.323224e-01,1.000000e+00,3/16,8.79%,STXBP6;CNN3;BAIAP2L1
+prerank,RNA Nuclease Activity (GO:0004540),0.26758440741444417,0.9686370328797376,4.761905e-01,8.447272e-01,1.000000e+00,16/39,27.55%,RNASEH2A;ENDOG;SND1;EXOSC1;SAMHD1;RNASEH1;ELAC1;ELAC2;EXOSC10;CPSF3;EXOSC7;CNOT7;NOB1;EXOSC5;CNOT6;EXOSC2
+prerank,Phosphatase Activity (GO:0016791),0.2631886850551296,0.9650343392867116,5.096899e-01,8.460906e-01,1.000000e+00,6/41,6.84%,PON1;PPP1CA;LHPP;PSPH;PTPRJ;APTX
+prerank,Mitogen-Activated Protein Kinase Binding (GO:0051019),-0.3199941022982379,-0.9643503987001227,5.165975e-01,7.414640e-01,1.000000e+00,9/19,24.12%,MAPKAPK2;DUSP1;ATF7;NBR1;ACE;SIRT1;PPM1D;CDK5RAP3;MAPK7
+prerank,Hsp70 Protein Binding (GO:0030544),-0.30370189338598674,-0.964251845996932,5.210728e-01,7.333378e-01,1.000000e+00,7/23,15.24%,ERN1;SACS;TSC1;DNAJB1;RNF207;DNAJB14;FICD
+prerank,miRNA Binding (GO:0035198),-0.3087631660306146,-0.9596831960988693,5.089820e-01,7.365698e-01,1.000000e+00,6/20,31.44%,FMR1;RC3H1;ZC3H7B;AGO4;AGO3;HNRNPA2B1
+prerank,Core Promoter Sequence-Specific DNA Binding (GO:0001046),-0.28114977345427283,-0.9567279527048764,5.456311e-01,7.359924e-01,1.000000e+00,5/29,7.85%,FOS;TAF1C;KLF10;POU2F1;ZBTB17
+prerank,"RNA Exonuclease Activity, Producing 5'-Phosphomonoesters (GO:0016896)",0.2895927613638554,0.9540888492120362,5.126706e-01,8.701343e-01,1.000000e+00,10/26,27.59%,ERI3;POLRMT;TOE1;EXOSC10;CPSF3;EXOSC7;CNOT7;EXOSC5;EXOSC2;XRN2
+prerank,Ribonucleoside Triphosphate Phosphatase Activity (GO:0017111),0.20520894710648846,0.9490807222957172,5.409182e-01,8.760295e-01,1.000000e+00,42/158,25.26%,EEF2;ARL2;RAC1;RHOA;TUBA1B;NTPCR;GNG5;RAB32;RAB1B;RABL3;LSG1;RHOG;ARF1;RGS10;RHOD;GPN1;DRG1;GPN3;RAN;RGS5;RAB25;RGS2;GNAS;GNA11;GNA12;RAB5C;RALB;EEF1A1;ATL2;GNAI2;ARF4;GFM2;ABCE1;EFTUD2;GSPT1;RGS19;MFN2;EEF1A2;RAB1A;RAB8A;RRAGA;DNM1L
+prerank,Copper Ion Binding (GO:0005507),0.2995526056078588,0.949055041643328,5.229541e-01,8.668654e-01,1.000000e+00,11/22,27.50%,SNCG;COMMD1;COA6;TP53;CUTA;SLC31A1;LOXL3;P2RX4;SOD1;COX17;PARK7
+prerank,Metal Ion Transmembrane Transporter Activity (GO:0046873),-0.313827736939497,-0.9483272166601846,5.340000e-01,7.489396e-01,1.000000e+00,8/18,24.89%,ITPR1;CNNM4;TMEM165;SLC23A2;ZDHHC13;SLC41A1;SLC11A2;ATP2A3
+prerank,Protein Phosphatase Binding (GO:0019903),0.23447714883837698,0.9457496952608372,5.432099e-01,8.672511e-01,1.000000e+00,18/65,22.63%,GRIN3A;VRK3;ANAPC5;TP53;STYXL1;AP3B1;ENSA;ANAPC7;HSP90B1;GNA12;IGBP1;VCP;SNX3;PIK3R2;PPP1R11;PPME1;SOD1;PPP1R3F
+prerank,GTPase Activity (GO:0003924),0.2041225998430969,0.939645179522447,5.748988e-01,8.756145e-01,1.000000e+00,41/154,25.26%,EEF2;ARL2;RAC1;RHOA;TUBA1B;GNG5;RAB32;RAB1B;RABL3;LSG1;RHOG;ARF1;RGS10;RHOD;GPN1;DRG1;GPN3;RAN;RGS5;RAB25;RGS2;GNAS;GNA11;GNA12;RAB5C;RALB;EEF1A1;ATL2;GNAI2;ARF4;GFM2;ABCE1;EFTUD2;GSPT1;RGS19;MFN2;EEF1A2;RAB1A;RAB8A;RRAGA;DNM1L
+prerank,DNA Polymerase Activity (GO:0034061),0.31425980218135174,0.9349522419502946,5.557692e-01,8.714232e-01,1.000000e+00,6/18,22.04%,POLE3;POLDIP2;POLD3;POLE2;POLA1;POLE4
+prerank,DNA-directed DNA Polymerase Activity (GO:0003887),0.31425980218135174,0.9349522419502946,5.557692e-01,8.714232e-01,1.000000e+00,6/18,22.04%,POLE3;POLDIP2;POLD3;POLE2;POLA1;POLE4
+prerank,Sodium Channel Regulator Activity (GO:0017080),0.3343358664067715,0.9337143386605743,5.308642e-01,8.663376e-01,1.000000e+00,6/15,19.27%,RANGRF;COMMD1;FXYD3;GPD1L;PKP2;NEDD4
+prerank,Chromatin DNA Binding (GO:0031490),-0.23650511963646054,-0.9304927081332115,5.922921e-01,7.865471e-01,1.000000e+00,10/50,12.66%,TOX3;GATAD2B;FOXO3;CREBBP;EP300;KDM3A;KDM6B;KDM6A;ZNF276;JMJD1C
+prerank,Calcium Channel Activity (GO:0005262),0.26730578396782745,0.9287383119915694,5.373737e-01,8.718833e-01,1.000000e+00,4/32,4.38%,TRPM8;ORAI1;PANX1;ANXA6
+prerank,Protein Tyrosine Phosphatase Activity (GO:0004725),-0.2517439934991385,-0.9263971835793368,5.735294e-01,7.889784e-01,1.000000e+00,10/40,20.37%,EYA3;DUSP5;PTPN3;PGPEP1;PTPN21;PTPRU;DUSP1;MTMR3;PTPN23;PTPN12
+prerank,ATPase Binding (GO:0051117),-0.24106103220609915,-0.9235860951928636,6.012024e-01,7.879697e-01,1.000000e+00,6/47,9.57%,TRPC1;SLC2A13;S100A1;PTPN3;DNAJB1;VCPKMT
+prerank,Palmitoyltransferase Activity (GO:0016409),0.3161407317231401,0.9234461585590872,5.666667e-01,8.783429e-01,1.000000e+00,6/18,16.20%,ZDHHC16;ZDHHC4;ZDHHC14;ZDHHC3;ZDHHC6;ZDHHC24
+prerank,Ribosomal Small Subunit Binding (GO:0043024),0.32508052419494,0.9229165499875722,5.714286e-01,8.714080e-01,1.000000e+00,3/15,7.12%,NME1;NPM1;UNG
+prerank,Carboxy-Lyase Activity (GO:0016831),0.3195752622095859,0.9208524579825267,5.717172e-01,8.685238e-01,1.000000e+00,5/16,15.34%,ODC1;AMD1;ME1;PAICS;MVD
+prerank,Signal Sequence Binding (GO:0005048),0.2729610744522543,0.9197027085299628,5.703125e-01,8.635528e-01,1.000000e+00,10/30,27.81%,KDELR1;KPNA2;TOMM20;IPO4;IPO5;TIMM22;AP2M1;KPNA1;KDELR2;BRAP
+prerank,Actin Binding (GO:0003779),0.21626143566446604,0.9187911617925435,6.142035e-01,8.578453e-01,1.000000e+00,26/93,23.11%,CNN2;PDLIM5;PACRG;COTL1;TMSB4X;PFN1;CAPZB;ARPC1A;PARVB;MAEA;PRSS8;BCL7B;MSRB1;FERMT2;MYO1F;CALD1;KIF18A;TMSB10;PDLIM1;MSRB2;DMTN;EMD;UTRN;PARVA;EPS8L1;ABL1
+prerank,Tubulin Binding (GO:0015631),-0.1895222929307555,-0.9160442785751302,6.914894e-01,7.982589e-01,1.000000e+00,63/197,26.20%,AGTPBP1;CGN;KIF7;KIF13A;NUMA1;CLIP1;KIFC2;MX1;FMR1;FAM161A;TTLL7;KIF21A;JMY;TUBGCP3;DDX3X;EFHC1;NDEL1;ARHGEF7;HDAC6;KIF14;KIF12;ARHGEF2;GAS8;FGF13;NISCH;MAST2;MAP9;RABGAP1;GOLGA2;HOOK1;KATNB1;NCALD;EML5;HOOK2;GABARAPL1;DIXDC1;KIF5C;SMC3;KIF5B;CAMSAP1;RMDN3;SUN2;INO80;PRNP;CCDC88B;CCSER2;HAUS6;WHAMM;KIF16B;WASH4P;APC;DST;VASH2;DIP2B;HTT;BRCA2;TUBGCP6;KIF1A;CCDC88C;GJA1;OFD1;KRIT1;NDRG1
+prerank,Cyclin-Dependent Protein Serine/Threonine Kinase Activity (GO:0004693),0.3083145117873095,0.9127735147895935,5.725338e-01,8.574608e-01,1.000000e+00,5/17,19.53%,CDK19;CDK4;CDK5;CDK2;CDK7
+prerank,Cyclin-Dependent Protein Kinase Activity (GO:0097472),0.3083145117873095,0.9127735147895935,5.725338e-01,8.574608e-01,1.000000e+00,5/17,19.53%,CDK19;CDK4;CDK5;CDK2;CDK7
+prerank,Carboxylic Ester Hydrolase Activity (GO:0052689),0.24190870837408765,0.9113746405602999,6.000000e-01,8.531923e-01,1.000000e+00,6/45,10.43%,PON1;PLA2G7;PNPLA4;APMAP;BPHL;PGLS
+prerank,methyl-CpG Binding (GO:0008327),0.3120247596479454,0.9087559102323728,6.000000e-01,8.520335e-01,1.000000e+00,7/16,26.03%,MBD3;ERH;WDR77;LRWD1;PRMT5;PRMT1;MBD2
+prerank,Protein Serine/Threonine Phosphatase Activity (GO:0004722),0.2500027962359008,0.906207944700616,5.876686e-01,8.509445e-01,1.000000e+00,12/41,23.71%,PPP3CA;CDKN3;PPP1CA;TIMM50;SSU72;PPM1G;PPP4C;PPP3R1;CTDNEP1;PPP1CC;PGAM5;PPP6C
+prerank,Protein Kinase Regulator Activity (GO:0019887),-0.2245711897901781,-0.9031727832870758,6.495902e-01,8.214711e-01,1.000000e+00,8/65,7.13%,MT3;PPP1R1B;KIDINS220;PRKRIP1;CCNL2;CCNG2;MOB1B;CCNC
+prerank,Phosphatidylinositol Phosphate Binding (GO:1901981),0.22543844939029362,0.9011584870226106,6.550388e-01,8.560830e-01,1.000000e+00,7/62,5.44%,OBSCN;PARD3;FUNDC2;PLEKHB2;TECPR1;COMMD1;RNF34
+prerank,N-acyltransferase Activity (GO:0016410),0.2934544776121172,0.8999833516501016,6.080808e-01,8.515356e-01,1.000000e+00,5/20,15.07%,TGM2;GLYATL2;NAA10;CERS4;GLYATL1
+prerank,Mannosyltransferase Activity (GO:0000030),0.3096775383982591,0.8994751462112096,5.762712e-01,8.453716e-01,1.000000e+00,6/17,20.61%,ALG8;ALG3;ALG12;PIGV;DPM1;DPY19L2
+prerank,Phosphotyrosine Residue Binding (GO:0001784),-0.2782670053745964,-0.8948859754923295,6.501080e-01,8.319530e-01,1.000000e+00,6/23,17.80%,PTPN3;VAV2;SH3BP2;SHB;YES1;RASA1
+prerank,Ion Channel Inhibitor Activity (GO:0008200),-0.29225936640563305,-0.8935899495533021,5.919662e-01,8.266448e-01,1.000000e+00,3/20,5.92%,ITPR1;WNK4;SLC30A1
+prerank,3'-5'-RNA Exonuclease Activity (GO:0000175),0.2685915953748451,0.8912940558188215,6.386719e-01,8.575287e-01,1.000000e+00,10/28,27.59%,ERI3;POLRMT;TOE1;EXOSC10;EXOSC7;CNOT7;EXOSC5;CNOT6;EXOSC2;XRN2
+prerank,Phosphatidylinositol-3-Phosphate Binding (GO:0032266),0.2756192343965302,0.8909363767728734,6.392157e-01,8.507731e-01,1.000000e+00,3/25,5.12%,OBSCN;PARD3;TECPR1
+prerank,GDP Binding (GO:0019003),-0.23573144320396522,-0.8895374096416987,6.570842e-01,8.275626e-01,1.000000e+00,20/45,32.32%,GEM;GNAI1;TRIM23;RAB5A;NRAS;RAB27B;RAB27A;RAB8B;RAB22A;RRAGD;RAP2A;RAP2B;RAB21;RAP2C;HRAS;RAB17;RAB14;RAB2A;RIT1;RAB10
+prerank,Microtubule Binding (GO:0008017),-0.18975588792309883,-0.888940692358076,7.531915e-01,8.207234e-01,1.000000e+00,50/151,26.98%,CGN;KIF7;KIF13A;NUMA1;CLIP1;KIFC2;MX1;FMR1;FAM161A;KIF21A;JMY;TUBGCP3;NDEL1;CAMSAP3;HDAC6;KIF14;KIF12;ARHGEF2;GAS8;FGF13;MAST2;MAP9;GOLGA2;HOOK1;KATNB1;EML5;CAMSAP2;HOOK2;KIF5C;KIF5B;CAMSAP1;RMDN3;SUN2;PRNP;CCDC88B;CCSER2;HAUS6;WHAMM;KIF16B;APC;DST;VASH2;CEP290;TUBGCP6;KIF1A;CCDC88C;KRIT1;NDRG1;SPAST;KATNA1
+prerank,Double-Stranded RNA Binding (GO:0003725),-0.23966190397807655,-0.8870025215627079,6.745098e-01,8.171121e-01,1.000000e+00,10/46,14.96%,DDX60;SLC3A2;PRKRIP1;AGO1;ADARB1;DGCR8;ILF3;RC3H1;DICER1;LRRFIP1
+prerank,Phosphoric Ester Hydrolase Activity (GO:0042578),0.264749286278774,0.8843917146012642,6.086066e-01,8.589898e-01,1.000000e+00,5/27,10.70%,PPP1CA;LHPP;PTPRJ;APEX1;SAMHD1
+prerank,Lipase Activity (GO:0016298),-0.3042241895357638,-0.8841553013839374,6.511156e-01,8.153241e-01,1.000000e+00,1/15,0.54%,MGLL
+prerank,Acetyltransferase Activity (GO:0016407),-0.28529615907549866,-0.8726092988163805,6.425703e-01,8.325391e-01,1.000000e+00,4/20,11.51%,NAT14;CREBBP;EP300;KAT2B
+prerank,Cholesterol Binding (GO:0015485),0.2739522610904965,0.8642127570271534,6.615970e-01,8.991257e-01,1.000000e+00,7/23,25.40%,SOAT1;ANXA6;CD81;NPC2;GRAMD1A;OSBPL1A;VDAC2
+prerank,Histone Methyltransferase Activity (GO:0042054),-0.3019481314721811,-0.8617763402077804,6.621094e-01,8.473937e-01,1.000000e+00,2/15,5.52%,KMT2E;KMT2C
+prerank,Ubiquitin Binding (GO:0043130),0.2181445660235694,0.8573360040518563,7.244259e-01,9.073641e-01,1.000000e+00,16/64,21.06%,MVB12A;UCHL1;RAE1;FAF1;USP5;RAD23A;UBE2N;RNF19B;CKS1B;WDR48;CKS2;TOM1L1;NEDD4;TSG101;RNF185;OTUB1
+prerank,Monoatomic Anion Channel Activity (GO:0005253),0.2581625405839105,0.8447279975618792,6.873706e-01,9.276692e-01,1.000000e+00,2/24,1.14%,ANO10;VDAC3
+prerank,"Phosphatidylinositol-4,5-Bisphosphate Binding (GO:0005546)",0.23872689450133594,0.8441105585766482,7.120316e-01,9.212954e-01,1.000000e+00,8/38,13.22%,OBSCN;PARD3;COMMD1;PFN1;LDLRAP1;VIL1;CAPG;MAPKAP1
+prerank,Ephrin Receptor Binding (GO:0046875),0.30225379388459206,0.8424057210400012,6.791045e-01,9.173503e-01,1.000000e+00,2/15,5.25%,EFNB2;CHN1
+prerank,Potassium Channel Regulator Activity (GO:0015459),-0.2879053801453875,-0.8370596377612829,6.905738e-01,8.908606e-01,1.000000e+00,9/17,31.09%,KCNMB4;SLC5A3;RASA1;NEDD4L;ARPP19;KCNIP3;FLNA;SGK2;KCNAB2
+prerank,Transition Metal Ion Binding (GO:0046914),0.16623389912701528,0.832465941101674,9.151874e-01,9.306489e-01,1.000000e+00,44/272,15.04%,NUDT8;NQO2;TIMP1;MME;ARG2;POLR2L;TIMM13;IDE;CTCF;ACO2;PARP1;ERAP2;B4GALT1;COMMD1;TNFSF10;ADPRM;COA6;RPS29;TK1;TP53;RNPEP;ISCU;GYG1;PITRM1;ETHE1;CIAPIN1;SHMT1;ME1;CALR;SAMHD1;SMPD1;TIMM9;PRIM1;PHF14;TRAF7;CUTA;FBXL5;ISCA2;MSRB1;SLC31A1;NFU1;PHF5A;HMGCL;SUV39H2
+prerank,Phosphoric Diester Hydrolase Activity (GO:0008081),-0.27510022125435535,-0.8292309753473438,7.063492e-01,8.975194e-01,1.000000e+00,3/19,12.49%,PLCB1;PLD2;PLCG1
+prerank,Acetylglucosaminyltransferase Activity (GO:0008375),0.2772282734061511,0.8281722404997992,7.203883e-01,9.317210e-01,1.000000e+00,11/18,36.66%,ALG14;EXT2;MGAT4A;B3GNT4;RFNG;EXT1;PIGP;HEXA;HEXB;MGAT2;EXTL2
+prerank,TBP-class Protein Binding (GO:0017025),0.29447510491435025,0.8279883235277155,6.692759e-01,9.245801e-01,1.000000e+00,4/15,17.74%,TAF13;TAF12;RUVBL1;GTF2B
+prerank,mRNA 3'-UTR Binding (GO:0003730),-0.20352787037920703,-0.8240605823077215,8.094262e-01,8.988023e-01,1.000000e+00,7/67,7.51%,CPEB4;SECISBP2L;CELF1;ZNF385A;PABPC1L;FMR1;DDX17
+prerank,Protein Tyrosine Kinase Binding (GO:1990782),0.23284535584264032,0.8236338248340546,7.514911e-01,9.262784e-01,1.000000e+00,6/35,11.78%,PCNA;BANK1;TP53;PRR7;CPNE3;HYAL2
+prerank,Protein Phosphorylated Amino Acid Binding (GO:0045309),-0.23873149287995168,-0.8182775097997995,7.698925e-01,9.013837e-01,1.000000e+00,6/29,13.34%,PTPN3;FBXW7;VAV2;SH3BP2;SHB;YES1
+prerank,Amyloid-Beta Binding (GO:0001540),0.2347403017146497,0.8171401026939797,7.421875e-01,9.314144e-01,1.000000e+00,6/32,12.98%,ITM2A;CST3;APBA3;LDLRAP1;VBP1;PFDN1
+prerank,Phosphatidylinositol Bisphosphate Binding (GO:1902936),-0.2128966820424132,-0.8131434508153601,8.207739e-01,9.022765e-01,1.000000e+00,15/50,22.63%,GSDMD;PLCB1;PLEKHA5;HIP1R;SVIL;TWF2;HIP1;FCHO2;SNX18;ALOX15;SDCBP;GSN;PLEKHA4;KIF16B;SNX21
+prerank,Carboxylic Acid Transmembrane Transporter Activity (GO:0046943),0.24892694293416037,0.8115534116812528,7.353497e-01,9.348406e-01,1.000000e+00,7/24,16.68%,SLC7A5;SLC25A10;SLC3A1;SLC25A1;SLC1A4;SLC16A1;SLC5A6
+prerank,Telomeric DNA Binding (GO:0042162),0.2446192353239073,0.8033381186289226,7.531381e-01,9.427530e-01,1.000000e+00,5/28,8.94%,XRCC6;KDM1A;TERF2;RPA1;APEX1
+prerank,Kinase Binding (GO:0019900),0.15982661735541331,0.7925522761423838,9.713193e-01,9.542375e-01,1.000000e+00,62/270,22.55%,EEF2;RAC1;AURKA;NEK6;CCNB1;PARP1;CACUL1;SFN;JTB;RHOG;FAF1;FAM83D;NPM1;CDC25C;CALM3;PTPRJ;RPS6;PLK1;CDC6;ORC3;DNAJA3;HSP90AB1;PARP8;RAD23A;AURKB;CALM2;PGAM1;RPS3;CDC25B;TRIM68;MAPKAP1;CKS1B;FERMT2;ACSL3;RACGAP1;CKS2;CHEK2;EEF1A1;RPTOR;PRKAG2;RPS7;FAS;FOXM1;POLA1;TOM1L1;TPX2;KIF20A;SLC12A2;FBXO5;AP1B1;AP2A1;STUB1;CLTC;PIH1D1;UXT;RAD9A;UTRN;PPP1CC;PPP2R5A;PRDX3;CALM1;PDCD10
+prerank,K63-linked Polyubiquitin Modification-Dependent Protein Binding (GO:0070530),-0.2647740457628118,-0.7834708335439968,7.616162e-01,9.422064e-01,1.000000e+00,6/16,25.67%,WDR81;OPTN;OTUD7B;ZBTB1;TAB3;SQSTM1
+prerank,Protein-Cysteine S-palmitoyltransferase Activity (GO:0019706),0.27030291303559933,0.7641422506528901,7.613412e-01,9.917367e-01,1.000000e+00,5/16,16.20%,ZDHHC4;ZDHHC14;ZDHHC3;ZDHHC6;ZDHHC24
+prerank,Cysteine-Type Deubiquitinase Activity (GO:0004843),-0.19046055010328594,-0.759207028577421,8.974359e-01,9.695179e-01,1.000000e+00,20/58,30.99%,USP53;YOD1;USP20;OTUD4;USP34;USP31;OTUD1;CYLD;USP42;OTUD7B;PAN2;USP36;USP40;OTUD6B;USP38;USP50;USP16;USP11;JOSD2;USP8
+prerank,General Transcription Initiation Factor Binding (GO:0140296),0.23458760481661972,0.7589066726644129,8.141414e-01,9.921823e-01,1.000000e+00,10/25,30.68%,TP53;TAF13;TAF12;RUVBL1;GTF2B;AKR1B1;PSMC5;GTF2F1;ZFP36L2;HSF1
+prerank,Cyclin-Dependent Protein Serine/Threonine Kinase Regulator Activity (GO:0016538),0.21446339174857437,0.7585336033130702,8.501027e-01,9.852124e-01,1.000000e+00,7/32,14.86%,CCNH;CCNB1;CDK4;CCNB2;CKS1B;MCM2;CKS2
+prerank,Protein Kinase Activator Activity (GO:0030295),0.199570097530862,0.7575141801642369,8.791423e-01,9.793275e-01,1.000000e+00,13/48,22.53%,MAP2K2;WNT11;CALM3;STK11;PARP8;CALM2;CAB39L;RPTOR;PRKAG2;MLST8;UXT;STRADB;CALM1
+prerank,Protein Kinase Binding (GO:0019901),0.1503018783323466,0.7548350831372708,9.960396e-01,9.756705e-01,1.000000e+00,87/298,29.24%,PDLIM5;TCF3;EEF2;RAC1;BANK1;AURKA;NEK6;CCNB1;PARP1;CACUL1;SFN;JTB;RHOG;FAF1;FAM83D;NPM1;CDC25C;CALM3;PTPRJ;RPS6;PLK1;ORC3;DNAJA3;PDE3B;PRR7;CALM2;PGAM1;RPS3;CDC25B;TRIM68;MAPKAPK5;MAPKAP1;CKS1B;FERMT2;MAPK8IP1;ACSL3;RACGAP1;CKS2;CHEK2;EEF1A1;RPTOR;PRKAG2;RPS7;FOXM1;POLA1;TOM1L1;TPX2;PKP2;KIF20A;SLC12A2;FBXO5;PKN1;AP1B1;AP2A1;CLTC;PIH1D1;UXT;RAD9A;UTRN;MAP3K11;PPP1CC;PRDX3;CALM1;PDCD10;EEF1A2;LLGL1;TNIP1;CDC25A;CCND3;ACTB;ATG13;PRKAG1;FBXW5;DUSP22;IRAK4;MAPKAPK3;ILK;WDR45;MARVELD3;USP37;SPRED2;CCNA2;TFRC;DAXX;PRKAB1;BAD;ITGB1
+prerank,"Hydrolase Activity, Acting On Carbon-Nitrogen (But Not Peptide) Bonds, In Linear Amides (GO:0016811)",0.2114825279340488,0.7536818046939365,8.568773e-01,9.701420e-01,1.000000e+00,7/39,14.64%,NAAA;HINT2;PM20D2;NIT2;PFDN1;ASAH1;HDAC1
+prerank,Hsp90 Protein Binding (GO:0051879),0.24140571010467196,0.7502432776047706,8.357290e-01,9.678266e-01,1.000000e+00,7/23,19.82%,PACRG;AHSA1;STIP1;RPS3;SLC12A2;PPID;STUB1
+prerank,"Phosphatidylinositol-3,5-Bisphosphate Binding (GO:0080025)",-0.26610776183058327,-0.7484263406762031,8.004073e-01,9.747801e-01,1.000000e+00,5/15,22.04%,PLEKHA5;HIP1R;HIP1;PLEKHA4;KIF16B
+prerank,Antiporter Activity (GO:0015297),0.22342148558508046,0.7474648183865776,8.538012e-01,9.642301e-01,1.000000e+00,11/30,28.03%,SLC25A5;SLC7A5;SLC35B1;SLC25A10;SLC25A11;SLC35C2;UCP2;SLC25A15;SLC25A23;SLC35C1;SLC1A5
+prerank,Cysteine-Type Peptidase Activity (GO:0008234),0.17493088316599467,0.7361405565560197,9.378882e-01,9.713462e-01,1.000000e+00,12/90,13.30%,CTSZ;UCHL1;BLMH;USP39;USP18;CAPN2;USP5;GGH;CTSB;DESI1;CTSD;CASP4
+prerank,mRNA Binding (GO:0003729),0.1511711859828369,0.7319423190304366,9.900398e-01,9.694443e-01,1.000000e+00,28/209,12.85%,C1QBP;MRPS7;DHFR;ACO1;RPL26;PTBP1;KHDRBS3;RPS14;MRPS11;LRPPRC;EIF3D;EIF4A3;TP53;EIF4A1;RPL24;EIF2S1;HDLBP;SHMT1;CALR;RPL13A;CCT5;NELFE;RPS3;RPS5;RPS13;RPS26;CSTF3;ALYREF
+prerank,Polyubiquitin Modification-Dependent Protein Binding (GO:0031593),0.20164794263138053,0.7262998144992322,8.824663e-01,9.693261e-01,1.000000e+00,7/39,15.76%,UBL7;MPND;UIMC1;RAD23A;DEPDC1B;VCP;RAD18
+prerank,Kinase Activity (GO:0016301),0.17293040355101344,0.7240032482293779,9.399225e-01,9.649558e-01,1.000000e+00,22/78,27.41%,HYKK;MVK;PANK1;CDK5;STK39;DGKZ;PIK3CB;PKMYT1;SEPHS1;LYN;IDNK;BCKDK;RFK;COASY;CKMT1A;CHKA;AGK;PRKD1;SEPHS2;IRAK4;CDK1;CHKB
+prerank,Nuclear Estrogen Receptor Binding (GO:0030331),-0.22777553563080793,-0.7221582235887561,8.620690e-01,9.967186e-01,1.000000e+00,6/21,24.02%,NCOA6;LEF1;TRIP4;NRIP1;LATS1;MED1
+prerank,FAD Binding (GO:0071949),-0.2525198312596453,-0.7218215808808193,8.353909e-01,9.884242e-01,1.000000e+00,4/15,13.59%,MICAL3;QSOX1;STEAP4;CRY2
+prerank,"Catalytic Activity, Acting On A tRNA (GO:0140101)",0.20136870083690112,0.7183900305419175,8.851485e-01,9.646048e-01,1.000000e+00,15/35,36.01%,MTFMT;ALKBH1;ELAC1;ELAC2;FTSJ1;TYW3;ETF1;TRMT12;TARS2;DUS2;PTRH2;QRSL1;DTWD2;DUS1L;FTO
+prerank,Phosphatase Binding (GO:0019902),0.17558015524191234,0.7168463737083126,9.285714e-01,9.595282e-01,1.000000e+00,13/70,17.43%,VRK3;SLC9A3R2;ANAPC5;CHCHD3;STYXL1;SLC9A3R1;AP3B1;ANAPC7;HSP90B1;VCP;SNX3;PPP3R1;PIK3R2
+prerank,"Phosphotransferase Activity, Alcohol Group As Acceptor (GO:0016773)",0.19101016018182546,0.7167547431443851,9.242718e-01,9.529857e-01,1.000000e+00,11/52,19.65%,HYKK;UCK2;MVK;PANK1;DGKZ;DCK;HK1;IDNK;GNE;RFK;COASY
+prerank,Tau Protein Binding (GO:0048156),-0.21345147821621308,-0.7165199120143003,8.876652e-01,9.853598e-01,1.000000e+00,6/29,15.91%,EP300;HDAC6;DYRK1A;PRKAA1;ROCK1;PPP2CB
+prerank,Endonuclease Activity (GO:0004519),-0.198559177951177,-0.715217019444733,8.900204e-01,9.781383e-01,1.000000e+00,4/34,8.33%,ERN1;ANKZF1;SMG6;ERCC5
+prerank,Protein Kinase Inhibitor Activity (GO:0004860),-0.21863230040882353,-0.7121469406982035,8.803089e-01,9.727243e-01,1.000000e+00,7/25,20.25%,PPP1R1B;PRKRIP1;IBTK;CDKN1B;HEXIM1;CIT;CDKN1A
+prerank,Ubiquitin Ligase-Substrate Adaptor Activity (GO:1990756),-0.20209515086250518,-0.7072960674425505,9.113402e-01,9.692023e-01,1.000000e+00,12/35,30.82%,FEM1C;KLHDC1;PCMTD1;ANKRD9;KLHDC10;APPBP2;ZSWIM8;ARRDC4;FBXO3;KLHL15;DCAF13;KEAP1
+prerank,Deubiquitinase Activity (GO:0101005),0.17309449977042382,0.6965691091361179,9.618474e-01,9.653069e-01,1.000000e+00,14/68,21.06%,UCHL1;USP39;USP18;COPS6;USP5;DESI1;DEPDC1B;EIF3H;EIF3F;USP4;PSMD14;PSMD7;TANK;OTUB1
+prerank,Kinase Inhibitor Activity (GO:0019210),-0.22086995226624986,-0.6869356216981833,9.001957e-01,9.794347e-01,1.000000e+00,5/21,15.06%,PPP1R1B;PRKRIP1;CDKN1B;LRP6;HEXIM1
+prerank,Nuclear Androgen Receptor Binding (GO:0050681),0.2277608669432179,0.6792145118905283,9.068323e-01,9.735804e-01,1.000000e+00,8/20,28.86%,KDM1A;CALR;TRIM68;PKN1;SNW1;RNF14;PARK7;DAXX
+prerank,Protein Phosphatase Regulator Activity (GO:0019888),0.18235076197482022,0.678947019840061,9.642185e-01,9.672004e-01,1.000000e+00,13/43,22.53%,PPP2R2A;CALM3;STYXL1;PPP2R1A;CALM2;ENSA;GNA12;IGBP1;PPP3R1;PPP1R7;PPP2R5A;PPME1;CALM1
+prerank,Heme Binding (GO:0020037),-0.19112131231440338,-0.6626357838701953,9.510204e-01,9.887970e-01,1.000000e+00,5/35,11.22%,HBQ1;STC2;BACH1;STEAP4;DGCR8
+prerank,DNA Secondary Structure Binding (GO:0000217),0.20372846944145945,0.6613217518624166,9.347409e-01,9.740304e-01,1.000000e+00,12/25,34.09%,RAD51B;HMGA1;SMC6;RAD51AP1;RAD18;XRCC3;FANCM;MEN1;XPC;BLM;MSH2;MSH6
+prerank,Alpha-Tubulin Binding (GO:0043014),-0.20540546239469976,-0.6609920336932869,9.388186e-01,9.817761e-01,1.000000e+00,9/23,26.65%,TTLL7;EFHC1;HDAC6;NISCH;INO80;WASH4P;DIP2B;OFD1;SPAST
+prerank,Poly-Pyrimidine Tract Binding (GO:0008187),-0.22121774794269863,-0.6361695115492806,9.455253e-01,9.881198e-01,1.000000e+00,5/16,23.55%,PABPC1L;FMR1;KHDRBS1;IFIT5;HNRNPH1
+prerank,Sterol Binding (GO:0032934),-0.18817800320265873,-0.6311036526409954,9.429175e-01,9.828430e-01,1.000000e+00,3/29,8.21%,INSIG2;RORC;PTCH1
+prerank,Ubiquitin-Like Protein Peptidase Activity (GO:0019783),0.18892656172529176,0.6209260871079568,9.664570e-01,9.901849e-01,1.000000e+00,12/28,40.60%,USP18;DESI1;OTUB1;COPS4;USP30;STAMBP;UCHL3;SENP3;ATG4B;USP21;COPS5;USP48
+prerank,pre-mRNA Binding (GO:0036002),0.2057232443262701,0.6207844723969822,9.451754e-01,9.836778e-01,1.000000e+00,6/19,31.93%,PTBP1;U2AF1L4;HNRNPL;U2AF2;PRPF8;U2AF1
+prerank,ADP Binding (GO:0043531),0.20847454976544808,0.6148368960971289,9.548134e-01,9.798651e-01,1.000000e+00,10/17,35.45%,GLUD1;ME1;GCLC;PRKAG2;LONP1;PRKAG1;MYH9;MSH2;MSH6;MIEF1
+prerank,Protein Kinase C Binding (GO:0005080),0.2027262383617076,0.6095160476246758,9.666012e-01,9.755768e-01,1.000000e+00,1/19,0.45%,PDLIM5
+prerank,Nuclear Localization Sequence Binding (GO:0008139),0.2008992101010621,0.5954833358078526,9.634888e-01,9.746316e-01,1.000000e+00,3/18,15.32%,KPNA2;IPO4;IPO5
+prerank,Receptor Tyrosine Kinase Binding (GO:0030971),-0.17307780288838207,-0.5949870883050495,9.757576e-01,9.910248e-01,1.000000e+00,11/30,29.11%,MST1;CBL;TRADD;FRS2;SH2B1;MAP3K7;SQSTM1;SOCS5;PITPNM1;PIK3R1;CBLB
+prerank,L-amino Acid Transmembrane Transporter Activity (GO:0015179),-0.16295830345650292,-0.5421086933357508,9.881188e-01,9.970789e-01,1.000000e+00,4/27,14.73%,SLC3A2;SLC15A4;SLC38A11;SLC7A11
+prerank,Promoter-Specific Chromatin Binding (GO:1990841),-0.1466230012815382,-0.5006680918421503,9.958678e-01,9.950951e-01,1.000000e+00,10/30,27.92%,KLF4;ZC3H4;ZNF609;PRDM15;POLR2A;ZNF304;RBL1;NIPBL;STAT1;DDX5

Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_70cr_GO_MF/gseapy.prerank.140288890693264.log

@@ -0,0 +1,8 @@
+2026-05-11 07:13:26,873 prerank140288890693264::[DEBUG   ] Input data is a DataFrame with gene names
+2026-05-11 07:13:26,876 prerank140288890693264::[INFO    ] Parsing data files for GSEA.............................
+2026-05-11 07:13:26,888 prerank140288890693264::[INFO    ] Enrichr library gene sets already downloaded in: /root/.cache/gseapy, use local file
+2026-05-11 07:13:26,908 prerank140288890693264::[INFO    ] 0866 gene_sets have been filtered out when max_size=500 and min_size=15
+2026-05-11 07:13:26,908 prerank140288890693264::[INFO    ] 0281 gene_sets used for further statistical testing.....
+2026-05-11 07:13:26,908 prerank140288890693264::[INFO    ] Start to run GSEA...Might take a while..................
+2026-05-11 07:13:47,845 prerank140288890693264::[INFO    ] Congratulations. GSEApy runs successfully................
+

Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_70cr_KEGG/gseapy.gene_set.prerank.report.csv

@@ -0,0 +1,264 @@
+Name,Term,ES,NES,NOM p-val,FDR q-val,FWER p-val,Tag %,Gene %,Lead_genes
+prerank,Ribosome,0.5775050751075156,2.5801336502755383,1.000000e-03,1.000000e-03,1.000000e-03,78/123,28.82%,MRPS7;RPS15;RPL23A;RPS27A;MRPS15;RPS12;RPL26;MRPL9;MRPL33;MRPS12;RPS14;RPS15A;MRPS11;RPS29;MRPS2;RPS6;MRPL21;MRPL11;RPS16;MRPS9;RPL24;MRPL4;RPL14;RPL19;RPSA;MRPL15;RPS25;RPL13A;MRPL16;RPS28;RPL21;RPS3;RPS5;MRPL2;RPS13;MRPL18;RPS26;RPS8;RPL28;MRPL34;MRPS14;MRPL20;RPL10A;UBA52;MRPS17;RPS4X;RPL18A;MRPL27;MRPL17;RPL5;RPS7;MRPL3;MRPL22;MRPL36;RPL27;RPL27A;RPL7A;RPL32;RPL26L1;RPL12;RPS3A;RPL36AL;MRPS16;MRPL10;RPS20;RPL4;MRPL35;RPS24;MRPL19;RPL6;RPL35A;RPL13;MRPL14;RPLP2;MRPS18A;RPL36;MRPS5;RPS21
+prerank,Bile secretion,0.7924398127049022,2.4892840438647683,1.000000e-03,1.000000e-03,1.000000e-03,7/22,7.34%,ABCB1;SLC4A4;UGT2B15;ATP1B1;EPHX1;HMGCR;ATP1A1
+prerank,Oxidative phosphorylation,0.5842524853700068,2.47980228119505,1.000000e-03,1.000000e-03,1.000000e-03,50/89,21.56%,NDUFS7;ATP6V0D1;UQCRC1;NDUFB9;UQCRFS1;NDUFS8;NDUFA6;NDUFB11;UQCR11;NDUFA10;LHPP;NDUFB4;UQCR10;NDUFC1;ATP6V1B2;NDUFA4;PPA1;PPA2;ATP6V1E1;ATP6V1C2;COX5A;NDUFA3;COX10;SDHA;NDUFS3;NDUFA9;NDUFV2;NDUFA4L2;SDHB;UQCRC2;CYC1;SDHC;UQCRH;NDUFS2;NDUFS4;ATP6V0E1;ATP6AP1;NDUFA7;COX6B1;ATP6V1H;COX7B;NDUFC2;NDUFB10;COX7A2;NDUFA12;ATP6V0E2;COX15;NDUFA13;ATP6V1F;NDUFAB1
+prerank,DNA replication,0.6744687361837961,2.321178621285302,1.000000e-03,1.000000e-03,2.000000e-03,27/34,25.51%,PCNA;POLE3;RNASEH2A;POLD2;RPA1;RFC5;MCM6;RNASEH2C;RNASEH1;RFC3;PRIM1;POLD3;RFC2;MCM2;MCM4;POLA2;MCM5;POLE2;POLA1;RFC4;MCM3;RPA3;DNA2;POLE4;POLD4;RNASEH2B;MCM7
+prerank,Cytokine-cytokine receptor interaction,-0.6162404083412719,-2.272132070763774,1.000000e-03,1.000000e-03,1.000000e-03,21/43,13.00%,TNFRSF19;GDF9;GDF15;TNFRSF25;TNFRSF12A;TNFRSF14;ACVR1B;BMP2;LIFR;TGFBR1;BMPR2;TNFSF15;IL4R;RELT;TGFB1;IL17RE;IL6R;PRLR;TNFRSF10B;EPOR;CCL28
+prerank,Parkinson disease,0.47709098697169605,2.2713826538660378,1.000000e-03,1.301901e-03,5.000000e-03,92/173,24.27%,MAOA;NDUFS7;SLC25A5;VDAC3;UQCRC1;TRAP1;PSMD8;RPS27A;NDUFB9;UCHL1;UQCRFS1;NDUFS8;PSMC4;NDUFA6;TUBA1B;TUBA1C;PSMD1;NDUFB11;UQCR11;PSMA5;NDUFA10;PSMB3;NDUFB4;UQCR10;UBB;PPIF;NDUFC1;CALM3;NDUFA4;TP53;PSMC1;PSMD2;PSMD9;PSMD6;TXN2;TUBB;EIF2S1;COX5A;NDUFA3;SDHA;ADRM1;NDUFS3;NDUFA9;UBE2L3;TUBB3;PSMC3;CALM2;PSMD3;PSMA1;NDUFV2;NDUFA4L2;SDHB;UQCRC2;CYC1;GNAS;SDHC;UQCRH;NDUFS2;NDUFS4;PSMB2;PSMB7;UBA52;PSMA4;KLC3;NDUFA7;PSMA3;COX6B1;COX7B;NDUFC2;NDUFB10;COX7A2;GNAI2;NDUFA12;PSMB4;PSMD14;PSMD13;PSMA6;NDUFA13;PSMD7;HTRA2;UBE2J2;NDUFAB1;CALM1;MAPK9;COX5B;MFN2;NDUFB3;PSMC5;PSMA2;PSMA7;UBE2G1;NDUFV3
+prerank,Drug metabolism,0.5987659432182466,2.2680981134738913,1.000000e-03,1.084917e-03,5.000000e-03,16/44,11.04%,ALDH3B2;UGT2B15;MAOA;NME7;GSTT1;UCK2;GSTM4;NME1;GSTM3;TK1;MGST1;IMPDH2;RRM2;GMPS;GUSB;TK2
+prerank,Citrate cycle (TCA cycle),0.6665045399899757,2.2338937006835073,1.000000e-03,1.704870e-03,9.000000e-03,22/27,29.97%,FH;ACO1;ACO2;MDH2;SUCLG1;SDHA;SDHB;IDH1;SDHC;IDH3A;ACLY;OGDH;IDH3G;CS;SUCLA2;PC;IDH3B;PCK2;DLST;IDH2;PDHB;DLD
+prerank,Huntington disease,0.4519108038002767,2.2142629452963103,1.000000e-03,1.627376e-03,1.000000e-02,106/207,25.56%,TBPL1;POLR2E;NDUFS7;POLR2D;SLC25A5;TGM2;VDAC3;UQCRC1;PSMD8;NDUFB9;POLR2L;UQCRFS1;NDUFS8;PSMC4;NDUFA6;TUBA1B;TUBA1C;PSMD1;NDUFB11;UQCR11;PSMA5;IFT57;NDUFA10;PSMB3;NDUFB4;UQCR10;POLR2G;PPIF;NDUFC1;CLTB;NDUFA4;TP53;PSMC1;PSMD2;AP2S1;PSMD9;PSMD6;GPX1;TUBB;COX5A;NDUFA3;SDHA;ADRM1;NDUFS3;GPX7;NDUFA9;TUBB3;PSMC3;PSMD3;PSMA1;NDUFV2;NDUFA4L2;SDHB;ACTR1A;UQCRC2;CYC1;SDHC;UQCRH;NRF1;NDUFS2;NDUFS4;PSMB2;PSMB7;HDAC1;CLTA;PSMA4;KLC3;POLR2F;POLR2C;NDUFA7;PSMA3;COX6B1;COX7B;NDUFC2;NDUFB10;COX7A2;POLR2H;NDUFA12;PSMB4;PSMD14;DCTN3;AP2A1;PSMD13;PSMA6;HDAC2;AP2M1;CLTC;NDUFA13;PSMD7;CREB3L4;POLR2J;NDUFAB1;DCTN5;SOD1;MAPK9;COX5B;NDUFB3;PSMC5;MAP3K10;PSMA2;PSMA7;NDUFV3;CREB3;VDAC2;TFAM;ATG13
+prerank,Folate biosynthesis,0.7190339837830021,2.1194642368692778,1.000000e-03,5.665680e-03,4.000000e-02,6/15,7.84%,AKR1C3;DHFR;CBR1;PCBD1;GGH;MOCOS
+prerank,Proteasome,0.5727902288486045,2.0797857710149708,1.000000e-03,8.570847e-03,6.100000e-02,29/42,24.23%,PSMD8;PSMC4;PSMD1;PSMA5;PSMB3;POMP;PSMC1;PSMD2;PSMD9;PSMD6;ADRM1;PSMC3;PSMD3;PSMA1;PSMB2;PSMB7;PSME3;PSMA4;PSMA3;PSME2;PSMB4;PSMD14;PSME1;PSMD13;PSMA6;PSMD7;PSMC5;PSMA2;PSMA7
+prerank,Prion disease,0.4346735034918109,2.0789184546394863,1.000000e-03,8.087566e-03,6.200000e-02,86/174,24.59%,GRIN3A;NDUFS7;PPP3CA;HSPA8;SLC25A5;VDAC3;UQCRC1;PSMD8;NDUFB9;RAC1;UQCRFS1;NDUFS8;PSMC4;NDUFA6;TUBA1B;TUBA1C;PSMD1;NDUFB11;UQCR11;PSMA5;NDUFA10;PSMB3;NDUFB4;UQCR10;PPIF;NDUFC1;NDUFA4;PSMC1;PSMD2;PSMD9;PSMD6;TUBB;EIF2S1;COX5A;NDUFA3;SDHA;ADRM1;NDUFS3;NDUFA9;PIK3CB;TUBB3;PSMC3;STIP1;PSMD3;PSMA1;NDUFV2;NDUFA4L2;SDHB;UQCRC2;CYC1;SDHC;UQCRH;NDUFS2;NDUFS4;PSMB2;PSMB7;PSMA4;KLC3;NDUFA7;PSMA3;COX6B1;COX7B;NDUFC2;NDUFB10;PPP3R1;COX7A2;NDUFA12;PSMB4;PIK3R2;PSMD14;PSMD13;PSMA6;NDUFA13;PSMD7;CREB3L4;NDUFAB1;SOD1;MAPK9;COX5B;NDUFB3;PSMC5;LAMC1;PSMA2;PSMA7;NDUFV3;CREB3
+prerank,Arginine and proline metabolism,0.596362690299809,2.0754654332037177,2.074689e-03,7.684831e-03,6.500000e-02,18/31,20.62%,ODC1;MAOA;ARG2;GAMT;ALDH9A1;GOT2;SRM;GOT1;PYCR1;ALDH4A1;AMD1;CNDP2;ALDH1B1;AGMAT;CKMT1B;PYCR2;ALDH18A1;CKMT1A
+prerank,beta-Alanine metabolism,0.7404253739083438,2.0700680090134713,1.000000e-03,7.844787e-03,6.900000e-02,7/15,9.67%,ALDH3B2;ALDH9A1;ECHS1;HADHA;ALDH6A1;CNDP2;ALDH1B1
+prerank,Steroid biosynthesis,0.6903784844708041,2.0209746294217674,1.937984e-03,1.185660e-02,1.020000e-01,12/17,20.45%,HSD17B7;SOAT1;DHCR24;LIPA;MSMO1;NSDHL;EBP;CYP27B1;DHCR7;LBR;FDFT1;CYP51A1
+prerank,Metabolism of xenobiotics by cytochrome P450,0.6387843890388186,2.015360562902852,1.949318e-03,1.164478e-02,1.060000e-01,11/23,10.13%,ALDH3B2;UGT2B15;CBR1;GSTT1;GSTM4;EPHX1;AKR7A2;GSTM3;MGST1;AKR7A3;CBR3
+prerank,ABC transporters,0.669711122221343,2.006399404541432,3.809524e-03,1.152725e-02,1.100000e-01,1/18,0.01%,ABCB1
+prerank,Diabetic cardiomyopathy,0.43942003872725166,1.9901830265623544,1.000000e-03,1.244464e-02,1.240000e-01,47/131,17.43%,NDUFS7;SLC25A5;VDAC3;UQCRC1;NDUFB9;PPP1CA;RAC1;MPC1;UQCRFS1;NDUFS8;NDUFA6;NDUFB11;UQCR11;NDUFA10;PARP1;NDUFB4;UQCR10;PPIF;NDUFC1;NDUFA4;MPC2;COX5A;NDUFA3;AGTR1;SDHA;NDUFS3;NDUFA9;PIK3CB;NDUFV2;NDUFA4L2;SDHB;UQCRC2;CYC1;CTSD;SDHC;UQCRH;NDUFS2;NDUFS4;NDUFA7;COX6B1;COX7B;NDUFC2;NDUFB10;GAPDH;COX7A2;NDUFA12;PIK3R2
+prerank,Alzheimer disease,0.39781410387616467,1.978732649913493,1.000000e-03,1.277792e-02,1.350000e-01,85/236,19.97%,APP;NDUFS7;PPP3CA;MAP2K2;MME;SLC25A5;VDAC3;UQCRC1;PSMD8;NDUFB9;UQCRFS1;NDUFS8;PSMC4;NDUFA6;TUBA1B;WNT11;TUBA1C;PSMD1;IDE;NDUFB11;UQCR11;PSMA5;NDUFA10;PSMB3;NDUFB4;UQCR10;PPIF;NDUFC1;CAPN2;CALM3;NDUFA4;CDK5;PSMC1;PSMD2;PSMD9;PSMD6;CHUK;TUBB;EIF2S1;COX5A;NDUFA3;SDHA;ADRM1;NDUFS3;NDUFA9;PIK3CB;TUBB3;PSMC3;CALM2;PSMD3;PSMA1;NDUFV2;NDUFA4L2;SDHB;UQCRC2;CYC1;SDHC;UQCRH;NDUFS2;NDUFS4;PSMB2;PSMB7;PSMA4;KLC3;NDUFA7;PSMA3;COX6B1;COX7B;NDUFC2;NDUFB10;HSD17B10;GAPDH;FAS;PPP3R1;COX7A2;NDUFA12;PSMB4;PIK3R2;PSMD14;ATP2A1;PPID;PSMD13;PSMA6;NDUFA13;PSMD7
+prerank,Biosynthesis of unsaturated fatty acids,0.677485209718422,1.9781639164862987,1.934236e-03,1.210539e-02,1.350000e-01,14/18,27.58%,ACOT7;ELOVL5;TECR;HSD17B4;FADS2;ELOVL6;ACOT1;ACOT2;FADS1;ELOVL1;ACOX3;HSD17B12;ACAA1;ELOVL4
+prerank,Glutathione metabolism,0.5403150359904746,1.9759522101927482,1.000000e-03,1.166286e-02,1.350000e-01,16/37,19.34%,ODC1;GPX4;GSTT1;SRM;GSTM4;PGD;GSTM3;MGST1;GPX1;TXNDC12;RRM2;GPX7;IDH1;GCLC;PRDX6;GSTK1
+prerank,Thermogenesis,0.4199482882898187,1.9571144079972032,1.000000e-03,1.239906e-02,1.480000e-01,77/153,27.12%,NDUFS7;UQCRC1;COX16;NDUFB9;UQCRFS1;NDUFS8;NDUFA6;NDUFB11;UQCR11;NDUFAF6;NDUFA10;NDUFB4;UQCR10;RPS6KB2;RPS6KA1;NDUFC1;KDM1A;COA6;NDUFAF5;NDUFA4;RPS6;NDUFAF3;COX5A;NDUFA3;COX10;SDHA;NDUFS3;NDUFA9;NDUFV2;NDUFA4L2;SDHB;COA3;UQCRC2;CYC1;COA4;GNAS;SMARCD2;SDHC;UQCRH;NDUFS2;NDUFS4;COX18;NDUFAF1;RPS6KA3;ACSL3;NDUFAF4;COA1;NDUFA7;RPTOR;COX6B1;PRKAG2;COX7B;NDUFC2;NDUFB10;COX7A2;SMARCD3;NDUFA12;MLST8;COX15;AKT1S1;NDUFA13;CREB3L4;ACSL1;NDUFAB1;SMARCB1;SIRT6;COX5B;NDUFB3;NDUFV3;CREB3;ACTB;COA5;COX17;PRKAG1;NDUFB5;SMARCC1;CPT2
+prerank,Nucleotide excision repair,0.5324448230754983,1.9531532722455145,2.008032e-03,1.213135e-02,1.500000e-01,21/41,22.86%,CETN2;CCNH;PCNA;POLE3;POLD2;GTF2H2C;RPA1;GTF2H5;RFC5;RAD23A;RFC3;POLD3;RFC2;POLE2;RFC4;CDK7;RPA3;POLE4;ERCC2;POLD4;ERCC3
+prerank,Amyotrophic lateral sclerosis,0.39077770238559056,1.949821416665607,1.000000e-03,1.179258e-02,1.530000e-01,107/256,25.56%,NDUFS7;PPP3CA;NUP37;UQCRC1;PSMD8;NDUFB9;RAC1;UQCRFS1;CHCHD10;NDUFS8;PSMC4;NDUFA6;TUBA1B;NUP93;TUBA1C;PSMD1;NDUFB11;SIGMAR1;UQCR11;PSMA5;NDUFA10;PSMB3;RAE1;NDUFB4;UQCR10;PFN1;NDUFC1;NDUFA4;TP53;PSMC1;PSMD2;PSMD9;TOMM40;PSMD6;GPX1;SEC13;TUBB;EIF2S1;COX5A;NDUFA3;SDHA;ADRM1;NDUFS3;NUP88;GPX7;NDUFA9;NUP133;TUBB3;PSMC3;PSMD3;PSMA1;NDUFV2;NDUFA4L2;SDHB;ACTR1A;UQCRC2;CYC1;VAPB;SDHC;ALYREF;UQCRH;NDUFS2;NDUFS4;PSMB2;GLE1;PSMB7;PSMA4;KLC3;NDUFA7;PSMA3;VCP;COX6B1;COX7B;NDUFC2;NDUFB10;NUP205;PPP3R1;COX7A2;NDUFA12;PSMB4;PSMD14;SRSF7;GABARAPL2;NDC1;DCTN3;NUP35;PSMD13;PSMA6;NDUFA13;PSMD7;TANK;NDUFAB1;DCTN5;SOD1;NXT1;COX5B;NDUFB3;RAB1A;PSMC5;PSMA2;PSMA7;NDUFV3;RAB8A;ACTB;SRSF3;HSPA5;ATG13
+prerank,Base excision repair,0.5642303664529559,1.917452991787622,3.752345e-03,1.392311e-02,1.810000e-01,13/30,22.52%,PARP4;PCNA;POLE3;PARP1;MUTYH;POLD2;UNG;APEX1;POLD3;POLE2;NTHL1;POLE4;POLD4
+prerank,Mismatch repair,0.6162507106645687,1.9135135901190758,7.604563e-03,1.358317e-02,1.820000e-01,12/21,23.39%,EXO1;PCNA;POLD2;RPA1;RFC5;RFC3;POLD3;RFC2;RFC4;RPA3;POLD4;MLH1
+prerank,N-Glycan biosynthesis,0.5410987942901295,1.9076258553529748,2.012072e-03,1.360319e-02,1.880000e-01,20/36,26.33%,ALG8;DAD1;ALG3;B4GALT1;ALG1;DOLPP1;RPN1;ALG5;ALG14;TUSC3;ALG12;B4GALT3;MGAT4A;DPM1;DDOST;RPN2;ALG2;B4GALT2;GANAB;DPAGT1
+prerank,"Glycine, serine and threonine metabolism",0.5969276371212353,1.863963122132467,4.081633e-03,1.691667e-02,2.290000e-01,11/21,22.06%,MAOA;GAMT;PSPH;GRHPR;SDSL;SHMT1;GCAT;PGAM1;PSAT1;BPGM;PHGDH
+prerank,Butanoate metabolism,0.6407892089412347,1.85153115626875,2.016129e-03,1.774615e-02,2.400000e-01,8/16,14.85%,BDH1;ECHS1;HADHA;HADH;ACAT2;L2HGDH;HMGCS2;HMGCL
+prerank,Circadian entrainment,-0.5028182921483737,-1.8331793944648216,2.183406e-03,7.536213e-02,1.340000e-01,13/40,11.56%,ITPR1;PER3;RPS6KA5;CALML4;FOS;PLCB1;PRKCA;ITPR3;CACNA1D;KCNJ3;GRIN1;RASD1;GNAI1
+prerank,Cell cycle,0.4096920749403785,1.8132962785111248,1.000000e-03,2.151129e-02,2.900000e-01,45/108,19.99%,CDC45;PTTG1;CCNH;ORC1;PCNA;PRKDC;CCNB1;ANAPC5;ORC5;SFN;ANAPC13;CDK4;CUL1;CDC25C;PLK1;CDC6;TP53;ORC6;YWHAE;FZR1;ORC3;CDC20;MCM6;PKMYT1;CDC25B;SKP2;YWHAB;CCNB2;ANAPC7;MCM2;TTK;MCM4;HDAC1;CHEK2;MCM5;ANAPC10;YWHAQ;SKP1;E2F4;CDK2;CCNE1;CDK7;HDAC2;MCM3;MAD2L1
+prerank,Tryptophan metabolism,0.5997492469062086,1.8049874758954518,7.812500e-03,2.202382e-02,3.080000e-01,8/18,11.24%,MAOA;ALDH9A1;ECHS1;HADHA;HADH;ALDH1B1;GCDH;ACAT2
+prerank,Purine metabolism,0.44986750365424194,1.8028100543777292,6.237006e-03,2.169835e-02,3.130000e-01,28/65,20.59%,PNP;NME7;PGM1;NTPCR;ATIC;NME1;ADPRM;AK1;IMPDH2;GMPR;RRM2;DGUOK;PDE3B;GMPS;ADSL;PDE9A;GART;DCK;PAICS;NUDT5;APRT;NME6;IMPDH1;NT5C3B;CANT1;ADK;NUDT2;AK2
+prerank,Pathways of neurodegeneration,0.35163165951810144,1.7994899710887022,1.000000e-03,2.156273e-02,3.200000e-01,115/297,24.27%,APP;NDUFS7;PPP3CA;MAP2K2;SLC25A5;VDAC3;UQCRC1;TRAP1;PSMD8;RPS27A;NDUFB9;RAC1;UCHL1;UQCRFS1;NDUFS8;PSMC4;NDUFA6;TUBA1B;WNT11;TUBA1C;PSMD1;NDUFB11;SIGMAR1;UQCR11;PSMA5;IFT57;NDUFA10;PSMB3;NDUFB4;UQCR10;UBB;PPIF;NDUFC1;CAPN2;CALM3;NDUFA4;CDK5;PSMC1;PSMD2;PSMD9;TOMM40;PSMD6;GPX1;TUBB;EIF2S1;COX5A;NDUFA3;SDHA;ADRM1;NDUFS3;GPX7;NDUFA9;UBE2L3;TUBB3;PSMC3;CALM2;PSMD3;PSMA1;NDUFV2;NDUFA4L2;SDHB;ACTR1A;UQCRC2;CYC1;VAPB;SDHC;UQCRH;NDUFS2;NDUFS4;PSMB2;PSMB7;UBA52;PSMA4;KLC3;NDUFA7;PSMA3;VCP;COX6B1;COX7B;NDUFC2;BAK1;NDUFB10;HSD17B10;FAS;PPP3R1;COX7A2;NDUFA12;PSMB4;PSMD14;GABARAPL2;DCTN3;ATP2A1;PPID;PSMD13;PSMA6;NDUFA13;PSMD7;TANK;HTRA2;UBE2J2;NDUFAB1;DCTN5;SOD1;CALM1;MAPK9;COX5B;MFN2;NDUFB3;RAB1A;PSMC5;MAP3K10;PSMA2;PSMA7;UBE2G1;NDUFV3
+prerank,Pyrimidine metabolism,0.5023266695469139,1.7725809209530308,1.257862e-02,2.386818e-02,3.550000e-01,16/38,20.53%,PNP;NME7;UCK2;CTPS1;DCTPP1;NME1;TK1;RRM2;DTYMK;DCK;TK2;NME6;DCTD;NT5C3B;CANT1;NUDT2
+prerank,Cysteine and methionine metabolism,0.5206417877744106,1.768793628032683,5.780347e-03,2.377245e-02,3.630000e-01,15/32,24.10%,GOT2;SRM;ADI1;MDH2;BCAT2;SDSL;TST;GOT1;AMD1;MPST;GCLC;PSAT1;AHCYL1;PHGDH;MAT2B
+prerank,Terpenoid backbone biosynthesis,0.5714772202752391,1.7606961829856407,5.882353e-03,2.424015e-02,3.770000e-01,11/21,16.42%,ZMPSTE24;FDPS;MVK;GGPS1;HMGCR;PDSS2;PDSS1;ACAT2;HMGCS2;MVD;IDI1
+prerank,GnRH secretion,-0.5000365410764824,-1.732233214638692,4.149378e-03,1.376310e-01,3.040000e-01,8/31,8.39%,TRPC1;ITPR1;GABBR1;PLCB1;PRKCA;ITPR3;CACNA1D;KCNJ3
+prerank,Estrogen signaling pathway,-0.4123056781119271,-1.7257581742706418,2.061856e-03,1.098460e-01,3.130000e-01,13/73,4.90%,HSPA6;HSPA1L;ITPR1;HSPA1A;GABBR1;NCOA2;CALML4;FOS;JUN;HSPA1B;HBEGF;PLCB1;ITPR3
+prerank,Porphyrin and chlorophyll metabolism,0.5625463114328141,1.7159411816372812,3.984064e-03,3.176397e-02,4.600000e-01,13/20,23.12%,UGT2B15;UROS;MMAB;HMOX2;EARS2;COX10;GUSB;HMOX1;FECH;BLVRA;HMBS;COX15;HCCS
+prerank,RNA polymerase,0.5328639496889225,1.7098600504236936,1.192843e-02,3.234227e-02,4.760000e-01,11/25,20.76%,POLR2E;POLR2D;POLR2L;POLR2G;POLR3H;POLR3K;POLR2F;POLR2C;POLR2H;POLR1C;POLR2J
+prerank,"Alanine, aspartate and glutamate metabolism",0.5521833750274615,1.7085328997108071,1.346154e-02,3.171956e-02,4.760000e-01,11/21,28.37%,GLUD1;GOT2;GOT1;ALDH4A1;ADSL;NIT2;RIMKLA;FOLH1;ASL;GLS2;ASS1
+prerank,Herpes simplex virus 1 infection,-0.3413074672620849,-1.7026792387353027,1.000000e-03,1.096176e-01,3.810000e-01,93/241,27.77%,ZNF641;ZNF432;ZNF83;ZNF84;ZNF517;ZNF785;TNFRSF14;ZNF141;ZNF548;ZNF471;ZNF621;ZNF33A;HLA-B;HLA-E;ZNF667;TSC1;ZNF320;POU2F1;ZNF302;ZNF337;ZNF133;ZFP1;ZFP30;ZNF23;ZNF529;ZNF286A;PILRB;ZNF736;HLA-A;ZNF587;ZNF846;ZNF251;ZNF354B;BIRC3;CARD9;IRF9;HCFC1;TRADD;ZNF783;DDX58;SRSF5;ZNF431;ZNF107;TYK2;ZNF566;ZNF558;TAP1;ZNF568;ZNF25;ZNF181;ZNF34;ZNF799;TRAF3;ZNF514;ZNF419;APAF1;ZNF606;ZNF273;ZFP82;ZNF37A;BIRC2;MAP3K7;ZNF786;TSC2;ZNF226;ZNF425;ZNF74;ZNF212;SRSF4;ZNF550;NXF1;HLA-C;TAPBP;TAB1;ZNF708;ZNF14;ZNF814;ZNF304;STAT2;ZNF331;TAP2;EIF2AK2;ZNF675;ZNF2;SRC;ZNF433;ZNF564;ZNF136;ZNF721;ZNF845;ZNF780A;STAT1;PPP1CB
+prerank,Fatty acid elongation,0.5774714219520501,1.6974588127167707,1.727447e-02,3.324298e-02,5.030000e-01,14/19,27.58%,ACOT7;ECHS1;HADHA;ELOVL5;TECR;ELOVL6;HADH;ACOT1;PPT1;ACAA2;ACOT2;ELOVL1;HSD17B12;ELOVL4
+prerank,Vascular smooth muscle contraction,-0.42612884395900225,-1.6922276896109014,3.984064e-03,1.033755e-01,4.140000e-01,12/55,5.89%,EDN2;ADM;ITPR1;KCNMB4;PPP1R12B;CALML4;PLCB1;PRKCA;PLA2G6;ITPR3;CACNA1D;GNA13
+prerank,Notch signaling pathway,-0.4685197159761506,-1.6804930818077168,4.140787e-03,9.800339e-02,4.460000e-01,17/38,21.55%,NOTCH1;DLL1;JAG2;CREBBP;EP300;KAT2A;KAT2B;TLE1;MAML3;HES1;DTX2;NCOR2;DTX3;RBPJ;DVL1;NOTCH2;APH1B
+prerank,JAK-STAT signaling pathway,-0.41435159707625946,-1.662854945421607,4.040404e-03,9.728566e-02,4.860000e-01,29/60,30.28%,LIFR;CREBBP;PIAS1;EP300;IL4R;SOCS4;STAM2;IRF9;IL6R;SOCS2;PRLR;EPOR;TYK2;PIM1;EGF;MCL1;SOS2;PIAS2;IL6ST;SOCS6;CDKN1A;STAT2;STAT6;SOCS5;MYC;STAT1;PIK3R1;HRAS;MTOR
+prerank,Glyoxylate and dicarboxylate metabolism,0.5212650370725102,1.6544161359365064,1.018330e-02,4.130823e-02,6.060000e-01,8/23,11.24%,ACO1;ACO2;GRHPR;MDH2;PGP;SHMT1;PCCB;ACAT2
+prerank,Cardiac muscle contraction,0.47509677843776005,1.6515028282266402,8.196721e-03,4.080348e-02,6.090000e-01,15/34,19.03%,ATP1B1;UQCRC1;UQCRFS1;UQCR11;UQCR10;TPM4;ATP1A1;COX5A;UQCRC2;CYC1;UQCRH;COX6B1;COX7B;COX7A2;ATP2A1
+prerank,Various types of N-glycan biosynthesis,0.4807628284447309,1.6457401295106737,1.167315e-02,4.166599e-02,6.190000e-01,15/29,24.75%,DAD1;ALG3;B4GALT1;ALG1;RPN1;ALG14;TUSC3;ALG12;B4GALT3;MGAT4A;ST3GAL3;DDOST;RPN2;ALG2;B4GALT2
+prerank,Ovarian steroidogenesis,0.5519613183604142,1.6351443094245486,2.173913e-02,4.344716e-02,6.400000e-01,5/17,12.36%,IGF1;AKR1C3;HSD17B7;ACOT1;GNAS
+prerank,Non-alcoholic fatty liver disease,0.3575748730925911,1.6261501072154683,1.901141e-03,4.502407e-02,6.580000e-01,40/123,17.43%,NDUFS7;UQCRC1;NDUFB9;RAC1;UQCRFS1;NDUFS8;NDUFA6;NDUFB11;UQCR11;NDUFA10;NDUFB4;UQCR10;NDUFC1;NDUFA4;EIF2S1;COX5A;NDUFA3;SDHA;NDUFS3;NDUFA9;PIK3CB;NDUFV2;NDUFA4L2;SDHB;UQCRC2;CYC1;SDHC;UQCRH;NDUFS2;NDUFS4;NDUFA7;COX6B1;PRKAG2;COX7B;NDUFC2;NDUFB10;FAS;COX7A2;NDUFA12;PIK3R2
+prerank,Galactose metabolism,0.5443906247277024,1.6247437975104664,2.811245e-02,4.436107e-02,6.620000e-01,7/20,12.86%,GLA;PGM1;GALM;B4GALT1;GLB1;HK1;G6PC3
+prerank,"Valine, leucine and isoleucine degradation",0.4491416765973984,1.6045184539496913,2.226721e-02,4.981186e-02,7.250000e-01,24/38,34.30%,ALDH9A1;ECHS1;HADHA;BCAT2;ALDH6A1;HADH;ALDH1B1;PCCB;ACAT2;MCCC2;HMGCS2;HMGCL;ACAA2;HSD17B10;HIBADH;AACS;PCCA;BCKDHB;ACAA1;DLD;AUH;ACAT1;MCCC1;HADHB
+prerank,Peroxisome,0.39714829998658335,1.598682183116479,1.008065e-02,5.057562e-02,7.400000e-01,29/62,32.21%,MVK;AMACR;ECH1;HSD17B4;MPV17;PRDX1;MPV17L2;IDH1;ACSL3;PEX11B;HMGCL;SLC25A17;PEX11G;GSTK1;ACSL1;SOD1;HACL1;PEX14;ACOX3;PEX10;PHYH;ACAA1;DECR2;ACOT8;IDH2;DHRS4;GNPAT;NUDT19;ECI2
+prerank,Progesterone-mediated oocyte maturation,0.40062151352621833,1.5963287383614027,1.383399e-02,5.006442e-02,7.410000e-01,41/67,37.51%,IGF1;AURKA;CCNB1;ANAPC5;ANAPC13;RPS6KA1;CDC25C;PLK1;FZR1;PDE3B;HSP90AB1;PIK3CB;PKMYT1;CDC25B;CCNB2;ANAPC7;RPS6KA3;ANAPC10;GNAI2;PIK3R2;CDK2;MAD2L1;MAPK9;CDC25A;CDC27;CDK1;CCNA2;MAPK13;GNAI3;ANAPC1;KIF22;BUB1;AKT3;ARAF;MAD2L2;MAPK3;AKT1;ANAPC11;SPDYC;MAPK1;BRAF
+prerank,Inositol phosphate metabolism,-0.4139822435179396,-1.589775508766985,1.449275e-02,1.632085e-01,7.030000e-01,16/46,22.84%,INPP5J;SYNJ1;PLCB1;IPMK;INPPL1;MINPP1;PLCG1;SACM1L;INPP5B;IMPA1;SYNJ2;OCRL;PIP4K2B;MTMR3;ITPKC;MTMR14
+prerank,RNA transport,0.34779927118514653,1.5864199282828075,1.050420e-02,5.212032e-02,7.640000e-01,50/143,24.15%,NUP37;EIF2B2;NUP93;RAE1;THOC3;EIF3I;EIF2B3;EIF3D;EIF4A3;EIF4A1;SEC13;EIF2S1;RAN;NUP88;EIF3B;NUP133;CYFIP1;SNUPN;EIF3H;EIF2S3;THOC7;ALYREF;GLE1;MAGOHB;RPP38;GEMIN2;ELAC1;UBE2I;EEF1A1;EIF3F;POP4;NUP205;SAP18;GEMIN6;EIF4E2;ELAC2;NDC1;NUP35;PRMT5;THOC5;RPP30;FXR2;XPO1;EIF2S2;EIF4E;NXT1;EIF4B;EIF4EBP2;EEF1A2;POP1
+prerank,GnRH signaling pathway,-0.39990429376301906,-1.5863827510816517,6.329114e-03,1.517291e-01,7.170000e-01,23/57,24.12%,ITPR1;MAP3K1;CALML4;JUN;HBEGF;PLCB1;PRKCA;ITPR3;CACNA1D;MAP3K2;PLD2;PTK2B;MAP3K3;MAP2K7;SOS2;MAPK11;NRAS;CAMK2B;CAMK2G;ELK1;ADCY6;PRKACB;MAPK7
+prerank,Cytosolic DNA-sensing pathway,0.47606494367250257,1.582335941009016,3.578529e-02,5.235811e-02,7.700000e-01,8/28,20.26%,POLR2E;POLR2L;CHUK;POLR3H;POLR3K;POLR2F;POLR2H;POLR1C
+prerank,Circadian rhythm,-0.5086837087926004,-1.5787611889619304,3.073770e-02,1.462399e-01,7.350000e-01,9/23,14.09%,PER3;BHLHE40;RORB;RORC;PRKAA2;NPAS2;PRKAB2;CRY2;PRKAA1
+prerank,Synaptic vesicle cycle,0.4589153454178482,1.5782047919676896,2.419355e-02,5.260786e-02,7.770000e-01,15/33,21.19%,ATP6V0D1;NAPA;ATP6V1B2;CLTB;AP2S1;ATP6V1E1;ATP6V1C2;ATP6V0E1;CLTA;ATP6V1H;ATP6V0E2;AP2A1;AP2M1;CLTC;ATP6V1F
+prerank,ECM-receptor interaction,-0.48928919648612534,-1.5748134515690415,1.919386e-02,1.385445e-01,7.450000e-01,10/26,19.25%,COL6A1;COL6A2;LAMA5;SV2A;CD44;AGRN;FN1;THBS3;HSPG2;ITGAV
+prerank,Viral myocarditis,-0.49163916441796235,-1.5717282105126729,2.542373e-02,1.313304e-01,7.550000e-01,5/22,9.84%,SGCD;CXADR;HLA-B;HLA-E;HLA-A
+prerank,Lysosome,0.3591207949098082,1.5631243073444474,1.737452e-02,5.679125e-02,8.090000e-01,52/97,34.58%,GLA;ATP6V0D1;CTSZ;LIPA;GLB1;CLTB;GNS;CTSB;GUSB;SMPD1;GBA;AP3S1;HYAL2;FUCA2;AP3B1;CTSD;AP1M2;ASAH1;PPT1;ATP6AP1;CLTA;SLC11A1;ATP6V1H;NAGA;ACP5;NPC2;LGMN;AP1B1;FUCA1;DNASE2;CLTC;AP3D1;LAPTM4A;MAN2B1;SLC17A5;CLN3;LITAF;CTSF;AP1M1;SORT1;CTSC;NEU1;ATP6V0B;TPP1;AP4S1;CTSH;LAMP1;PSAP;CTSA;HEXA;SUMF1;HEXB
+prerank,Phosphatidylinositol signaling system,-0.3887485934524951,-1.559844923227955,1.486200e-02,1.342164e-01,7.830000e-01,20/58,20.93%,ITPR1;SYNJ1;CALML4;PLCB1;PRKCA;ITPR3;DGKQ;IPMK;INPPL1;PPIP5K1;PLCG1;SACM1L;INPP5B;IMPA1;SYNJ2;OCRL;PIP4K2B;MTMR3;DGKE;ITPKC
+prerank,Arachidonic acid metabolism,0.5022869373034409,1.5442239050800382,3.868472e-02,6.358025e-02,8.540000e-01,7/19,10.13%,AKR1C3;CBR1;GPX1;CYP2U1;LTC4S;GPX7;CBR3
+prerank,Pentose phosphate pathway,0.4880657982055275,1.5399702625489755,4.426559e-02,6.421104e-02,8.600000e-01,8/22,21.61%,TALDO1;PGM1;PGD;PGLS;TKT;IDNK;FBP1;ALDOC
+prerank,MAPK signaling pathway,-0.32887947766531894,-1.5254688981112408,1.964637e-03,1.650355e-01,8.620000e-01,45/153,19.54%,HSPA6;HSPA1L;MAP3K1;VEGFA;MAPK8IP3;HSPA1A;RPS6KA5;DUSP5;FOS;JUN;HSPA1B;GADD45B;PRKCA;GADD45G;TGFBR1;CACNA1D;INSR;MAP3K2;MEF2C;MKNK1;MAP3K8;MAP4K3;RASA2;ELK4;TRADD;TGFB1;MAPKAPK2;NR4A1;EGF;NF1;MAP3K3;MAP2K7;VEGFB;SOS2;MAPK11;JUND;DUSP1;RASA1;NRAS;GADD45A;NFATC3;EFNA1;PPP3CC;MAP3K7;CACNB3
+prerank,Gastric cancer,0.3660552430446708,1.5154794403416094,2.404810e-02,7.343904e-02,9.010000e-01,4/73,4.84%,ABCB1;MAP2K2;WNT11;RPS6KB2
+prerank,Spinocerebellar ataxia,0.3512079092793131,1.5136405162150968,1.863354e-02,7.317380e-02,9.020000e-01,33/99,19.97%,GRIN3A;TBPL1;SLC25A5;VDAC3;PSMD8;PSMC4;PSMD1;PSMA5;PSMB3;PPIF;NOP56;PSMC1;PSMD2;PSMD9;PSMD6;ATXN10;ADRM1;PIK3CB;PSMC3;PSMD3;PSMA1;PSMB2;PSMB7;PSMA4;PSMA3;PSMB4;PIK3R2;PSMD14;GTF2B;ATP2A1;PSMD13;PSMA6;PSMD7
+prerank,"Parathyroid hormone synthesis, secretion and action",-0.3780737070251171,-1.5069541582552757,1.004016e-02,1.768726e-01,8.970000e-01,14/57,11.56%,ITPR1;MMP24;PDE4B;FOS;HBEGF;PLCB1;PRKCA;ITPR3;GNA13;PLD2;MEF2C;ARHGEF1;LRP6;GNAI1
+prerank,Oocyte meiosis,0.3508083453442347,1.4982494405070181,2.330097e-02,7.874216e-02,9.280000e-01,33/89,22.53%,IGF1;PPP3CA;PTTG1;PPP1CA;AURKA;CCNB1;ANAPC5;ANAPC13;RPS6KA1;CUL1;CDC25C;CALM3;PLK1;YWHAE;CDC20;PPP2R1A;CALM2;PKMYT1;YWHAB;CCNB2;ANAPC7;RPS6KA3;ANAPC10;PPP3R1;YWHAQ;SKP1;FBXO5;CDK2;CCNE1;MAD2L1;PPP1CC;PPP2R5A;CALM1
+prerank,Vibrio cholerae infection,0.4201900553648277,1.4961367756778898,4.911591e-02,7.835722e-02,9.310000e-01,18/38,27.11%,ATP6V0D1;PDIA4;ATP6V1B2;ARF1;KDELR1;ATP6V1E1;SEC61G;ATP6V1C2;GNAS;ATP6V0E1;ATP6AP1;ATP6V1H;ATP6V0E2;SLC12A2;ATP6V1F;KDELR2;ACTB;ATP6V1D
+prerank,Collecting duct acid secretion,0.5111912901820744,1.4961042805816884,5.314961e-02,7.708430e-02,9.310000e-01,7/16,21.19%,ATP6V0D1;ATP6V1B2;ATP6V1E1;ATP6V1C2;ATP6V0E1;ATP6V0E2;ATP6V1F
+prerank,Basal cell carcinoma,-0.4588085934384236,-1.494505372032699,3.885481e-02,1.833946e-01,9.200000e-01,13/26,24.33%,GADD45B;KIF7;GADD45G;BMP2;FZD1;LEF1;PTCH1;DDB2;GADD45A;CDKN1A;DVL1;APC;FZD6
+prerank,Legionellosis,-0.4325133508634679,-1.4914709512425128,3.326810e-02,1.773167e-01,9.230000e-01,5/32,2.55%,HSPA6;HSPA1L;HSPA1A;HSPA1B;CLK1
+prerank,Axon guidance,-0.34191838599729324,-1.486868895367287,8.316008e-03,1.736574e-01,9.260000e-01,37/97,20.33%,TRPC1;LRIG2;PLXNA3;PLXNB1;PRKCA;ABLIM3;PAK6;NRP1;SEMA5A;SEMA6A;BMPR2;PTCH1;SEMA3C;PARD6B;GNAI1;PLCG1;SEMA4C;SEMA4A;ABLIM1;SEMA4G;SEMA4D;ROCK1;PDPK1;SEMA3F;NEO1;RASA1;NRAS;SEMA4B;SSH1;SSH3;NFATC3;ENAH;EFNA1;PPP3CC;CAMK2B;ARHGEF12;CAMK2G
+prerank,AGE-RAGE signaling pathway in diabetic complications,-0.3848246698795157,-1.4792729027642941,2.330097e-02,1.738353e-01,9.380000e-01,14/50,17.82%,VEGFA;JUN;PLCB1;PRKCA;TGFBR1;FN1;SMAD3;CDKN1B;TGFB1;PLCG1;PIM1;VEGFB;MAPK11;NRAS
+prerank,TGF-beta signaling pathway,-0.3900363884902103,-1.477080157807241,2.910603e-02,1.682979e-01,9.420000e-01,16/47,17.74%,LTBP1;SMAD7;ACVR1B;BMP2;TGFBR1;SMAD9;BMPR2;BAMBI;CREBBP;EP300;SMAD3;TGFB1;ROCK1;PPP2CB;ZFYVE16;NEO1
+prerank,Th1 and Th2 cell differentiation,-0.4095117085229838,-1.4745065843027274,3.718200e-02,1.639697e-01,9.470000e-01,15/37,21.34%,NOTCH1;FOS;JUN;DLL1;JAG2;IL4R;MAML3;PLCG1;TYK2;MAF;MAPK11;NFATC3;PPP3CC;RBPJ;NOTCH2
+prerank,Protein digestion and absorption,-0.5017995909173117,-1.4456985850676072,6.387226e-02,1.937770e-01,9.690000e-01,5/16,4.25%,COL7A1;COL18A1;COL6A1;COL6A2;SLC3A2
+prerank,Glycerolipid metabolism,0.42300138398109316,1.4425871706497024,5.360825e-02,1.061592e-01,9.710000e-01,6/31,9.76%,MBOAT2;GLA;ALDH9A1;DGAT2;ALDH1B1;DGKZ
+prerank,Aminoacyl-tRNA biosynthesis,0.4470047426177236,1.436447487039517,7.392996e-02,1.088652e-01,9.710000e-01,13/22,32.70%,FARSB;MTFMT;YARS2;EARS2;DARS2;LARS2;NARS2;CARS2;FARSA;IARS2;WARS2;TARS2;QRSL1
+prerank,Propanoate metabolism,0.43355318336895576,1.4340881545985469,6.862745e-02,1.086317e-01,9.730000e-01,15/26,33.79%,ECHS1;HADHA;ALDH6A1;SUCLG1;ACACA;PCCB;ACAT2;SUCLA2;PCCA;ACOX3;BCKDHB;DLD;ACSS1;ACAT1;ACSS2
+prerank,Ribosome biogenesis in eukaryotes,0.3600265989931632,1.4332274459533314,3.508772e-02,1.075790e-01,9.730000e-01,26/63,30.32%,UTP14A;NOP10;LSG1;NOP56;RAN;NVL;IMP4;REXO1;RPP38;NHP2;DKC1;POP4;EMG1;FBL;RPP30;EIF6;SBDS;XPO1;NXT1;POP1;NOB1;XRN2;UTP6;CSNK2A2;WDR3;NAT10
+prerank,Fatty acid degradation,0.40498578945319447,1.4266136799097813,7.276507e-02,1.098987e-01,9.760000e-01,23/33,38.23%,ALDH9A1;ECHS1;HADHA;CYP2U1;HADH;ALDH1B1;GCDH;ACAT2;ACSL3;ACAA2;ACSBG1;ACSL1;ACOX3;CPT2;ACAA1;CPT1A;ECI2;ADH5;ACAT1;HADHB;ECI1;ALDH3A2;ALDH7A1
+prerank,Coronavirus disease,0.309321841804123,1.4027419298087687,4.191617e-02,1.247321e-01,9.850000e-01,56/140,29.47%,RPS15;CFD;RPL23A;RPS27A;RPS12;RPL26;RPS14;RPS15A;RPS29;RPS6;RPS16;CHUK;RPL24;RPL14;RPL19;RPSA;AGTR1;RPS25;RPL13A;PIK3CB;RPS28;RPL21;RPS3;RPS5;RPS13;RPS26;RPS8;RPL28;RPL10A;UBA52;RPS4X;RPL18A;RPL5;RPS7;PIK3R2;RPL27;RPL27A;RPL7A;RPL32;RPL26L1;RPL12;RPS3A;RPL36AL;MAPK9;RPS20;RPL4;RPS24;IRAK4;RPL6;RPL35A;RPL13;RPLP2;RPL36;RPS21;MAPK13;NFKB1
+prerank,RIG-I-like receptor signaling pathway,-0.3811743476702975,-1.3563458265318475,8.754864e-02,3.448769e-01,9.970000e-01,10/35,21.46%,MAP3K1;DDX3X;TRADD;DDX58;TRIM25;CYLD;TRAF3;MAPK11;MAP3K7;ISG15
+prerank,Basal transcription factors,0.36776873820992095,1.3549692351880676,7.422680e-02,1.639705e-01,9.940000e-01,14/39,24.97%,TBPL1;GTF2E2;CCNH;GTF2H2C;GTF2H5;TAF13;TAF12;GTF2B;CDK7;GTF2E1;ERCC2;ERCC3;GTF2I;TAF10
+prerank,Homologous recombination,0.38453048433691916,1.3490670578379755,9.631148e-02,1.674497e-01,9.940000e-01,13/33,25.31%,POLD2;RAD51B;RPA1;UIMC1;BRCA1;BABAM1;POLD3;XRCC3;RPA3;RAD51;POLD4;RAD54B;EME1
+prerank,Serotonergic synapse,-0.36691890282924344,-1.337697827396674,1.150628e-01,3.745269e-01,9.980000e-01,12/39,17.82%,TRPC1;ITPR1;PLCB1;PRKCA;ITPR3;CACNA1D;PTGS1;KCNJ3;GNAI1;ALOX15;DUSP1;NRAS
+prerank,"Growth hormone synthesis, secretion and action",-0.31507506594598783,-1.332482302539138,6.438632e-02,3.729459e-01,9.990000e-01,18/73,16.24%,ITPR1;MAP3K1;FOS;SSTR1;PLCB1;PRKCA;ITPR3;CACNA1D;CREBBP;EP300;IGFBP3;JUNB;GNAI1;SOCS2;PLCG1;CREB3L2;SOS2;MAPK11
+prerank,Oxytocin signaling pathway,-0.3117785921348923,-1.321095631674671,7.361963e-02,3.848459e-01,9.990000e-01,27/79,21.88%,ITPR1;PPP1R12B;CALML4;FOS;JUN;PLCB1;PRKCA;ITPR3;CACNA1D;PRKAA2;MEF2C;EEF2K;KCNJ3;GNAI1;PRKAB2;PRKAA1;ROCK1;NRAS;NFATC3;PPP3CC;CAMK2B;CACNB3;CDKN1A;CAMK2G;PPP1R12C;ELK1;ADCY6
+prerank,NF-kappa B signaling pathway,-0.35691014004024746,-1.3124740949281832,1.037736e-01,3.903497e-01,1.000000e+00,18/42,24.23%,GADD45B;GADD45G;ATM;CFLAR;BIRC3;TRADD;DDX58;PLCG1;TRIM25;MALT1;CYLD;TRAF3;GADD45A;BIRC2;MAP3K7;TAB1;TAB3;BCL10
+prerank,Ferroptosis,0.36754882689193336,1.309625230787197,1.255144e-01,2.053366e-01,9.990000e-01,15/34,28.70%,GPX4;VDAC3;SLC39A14;TP53;NCOA4;SLC39A8;HMOX1;ACSL3;GCLC;ACSL1;VDAC2;FTL;LPCAT3;TFRC;ATG7
+prerank,Phagosome,0.3212466005179256,1.3047354508624878,9.939148e-02,2.076280e-01,9.990000e-01,18/71,16.27%,SFTPA2;ATP6V0D1;RAC1;TUBA1B;TUBA1C;ATP6V1B2;ATP6V1E1;TUBB;SEC61G;ATP6V1C2;CALR;TUBB3;CANX;ATP6V0E1;ATP6AP1;RAB5C;ATP6V1H;STX12
+prerank,Bacterial invasion of epithelial cells,0.34285655574138746,1.294156573711377,1.010101e-01,2.180529e-01,9.990000e-01,23/51,31.56%,RAC1;RHOA;ARHGEF26;RHOG;CLTB;ARPC1A;ARPC5L;PIK3CB;ARPC2;CLTA;ACTR3;PIK3R2;ARPC3;CLTC;ARPC4;CDH1;ACTB;ILK;CTNNA1;ARPC1B;ITGB1;ELMO2;ACTG1
+prerank,Glycolysis / Gluconeogenesis,0.3551249055632741,1.2931577205889426,1.168317e-01,2.162500e-01,9.990000e-01,27/44,38.23%,ALDH3B2;ALDH9A1;PGM1;GALM;TPI1;ALDH1B1;PGAM1;HK1;G6PC3;GAPDH;FBP1;BPGM;ALDOC;ENO3;PCK2;PDHB;ENO1;ALDH3B1;DLD;ACSS1;ADH5;ACSS2;AKR1A1;ALDOA;DLAT;ALDH3A2;ALDH7A1
+prerank,GABAergic synapse,-0.37484410380773175,-1.2893065167216817,1.300000e-01,4.319817e-01,1.000000e+00,12/32,26.76%,GABRA2;GABBR1;PRKCA;CACNA1D;GNAI1;GABARAPL1;GABRA4;ADCY6;PRKACB;GNB5;TRAK2;SRC
+prerank,Insulin secretion,-0.36446433504511605,-1.288886793672882,1.164241e-01,4.185567e-01,1.000000e+00,6/31,5.32%,KCNMB4;VAMP2;PLCB1;PRKCA;ITPR3;CACNA1D
+prerank,Lipid and atherosclerosis,-0.2879787026154428,-1.2884474177718628,7.509881e-02,4.061746e-01,1.000000e+00,28/115,19.47%,HSPA6;HSPA1L;ITPR1;ERN1;HSPA1A;CALML4;FOS;JUN;HSPA1B;PLCB1;PRKCA;VAV2;POU2F1;ARHGEF1;MIB2;TNFRSF10B;PLCG1;MAP2K7;TRAF3;MAPK11;PDPK1;MIB1;APAF1;NRAS;NFATC3;PPP3CC;MAP3K7;CAMK2B
+prerank,Salivary secretion,-0.3921965897996186,-1.268833885310221,1.431493e-01,4.427811e-01,1.000000e+00,6/25,4.90%,ITPR1;CALML4;VAMP2;PLCB1;PRKCA;ITPR3
+prerank,Cholinergic synapse,-0.32639824359731096,-1.2621817719806037,1.434511e-01,4.459999e-01,1.000000e+00,16/48,24.99%,ITPR1;FOS;PLCB1;PRKCA;ITPR3;CACNA1D;KCNJ3;GNAI1;CREB3L2;NRAS;CAMK2B;CAMK2G;ADCY6;PRKACB;CREB1;GNB5
+prerank,Glutamatergic synapse,-0.3382484443938578,-1.2588744653876331,1.495902e-01,4.409961e-01,1.000000e+00,12/43,14.30%,TRPC1;ITPR1;PLCB1;PRKCA;ITPR3;CACNA1D;PLD2;KCNJ3;GRIN1;GNAI1;SHANK2;HOMER3
+prerank,Insulin resistance,-0.29895806997336005,-1.2531943697892851,1.095335e-01,4.418113e-01,1.000000e+00,16/72,16.84%,PPP1R3C;MLXIPL;CPT1B;ACACB;MLXIP;PRKAA2;INSR;OGT;CRTC2;PPP1R3E;PRKAB2;PRKAA1;NR1H2;CREB3L2;PDPK1;SLC27A3
+prerank,Neuroactive ligand-receptor interaction,-0.35794896051393726,-1.2457676474843675,1.743487e-01,4.488995e-01,1.000000e+00,10/33,15.53%,EDN2;ADM;GABRA2;GABBR1;SSTR1;THRB;GRIN1;PRLR;NMB;GABRA4
+prerank,Protein export,0.3983074645124136,1.2416781313346208,1.976967e-01,2.824100e-01,1.000000e+00,9/22,26.81%,OXA1L;SEC61G;SEC11A;SPCS1;SRPRB;SRP19;SRP68;HSPA5;SEC11C
+prerank,Th17 cell differentiation,-0.332768473448576,-1.240302451015948,1.485149e-01,4.509630e-01,1.000000e+00,14/44,19.14%,FOS;JUN;RORC;TGFBR1;IL4R;SMAD3;TGFB1;IL6R;PLCG1;TYK2;MAPK11;NFATC3;IL6ST;PPP3CC
+prerank,MicroRNAs in cancer,0.2812674202905516,1.240199719426154,1.080000e-01,2.807558e-01,1.000000e+00,18/108,15.79%,ABCB1;SLC45A3;MAP2K2;RHOA;FGFR3;STMN1;CDC25C;CDCA5;TP53;BRCA1;PIK3CB;CDC25B;EZH2;HMOX1;HDAC1;UBE2I;RPTOR;BAK1
+prerank,Morphine addiction,-0.3738829721094743,-1.2358094516426505,1.707819e-01,4.509949e-01,1.000000e+00,12/29,26.00%,GABRA2;GABBR1;PDE4B;PRKCA;KCNJ3;GNAI1;GABRA4;PDE8A;ADCY6;PRKACB;GNB5;GRK4
+prerank,Toxoplasmosis,-0.31443596286078757,-1.2357565716342842,1.307551e-01,4.395714e-01,1.000000e+00,13/57,19.39%,HSPA6;HSPA1L;HSPA1A;HSPA1B;LAMA5;BIRC3;GNAI1;TGFB1;TYK2;MAPK11;PDPK1;BIRC2;MAP3K7
+prerank,Cushing syndrome,-0.29494245192707713,-1.2319049971781295,1.386139e-01,4.385848e-01,1.000000e+00,27/79,24.33%,ITPR1;KMT2D;KMT2A;PLCB1;ITPR3;FZD1;CACNA1D;LEF1;WDR5B;CDKN1B;RASD1;ARMC5;GNAI1;NR4A1;CREB3L2;CAMK2B;PDE8A;E2F3;CDKN1A;CAMK2G;DVL1;RBBP5;ADCY6;APC;PRKACB;CREB1;FZD6
+prerank,Aldosterone-regulated sodium reabsorption,0.39539303822379984,1.2141303838440072,2.181467e-01,3.194788e-01,1.000000e+00,6/21,10.31%,IGF1;ATP1B1;SLC9A3R2;SFN;ATP1A1;PIK3CB
+prerank,Wnt signaling pathway,-0.289235088986222,-1.206223524210717,1.476378e-01,4.904721e-01,1.000000e+00,30/80,24.55%,JUN;PLCB1;PRKCA;FZD1;RNF43;BAMBI;LEF1;ZNRF3;CREBBP;DAAM1;EP300;SMAD3;PPARD;LRP6;TLE1;VANGL1;NFATC3;PPP3CC;MAP3K7;CAMK2B;SIAH1;CHD8;CAMK2G;DVL1;FRAT2;APC;PRKACB;CSNK1E;FZD6;RYK
+prerank,Spliceosome,0.26276461906053655,1.2024930418215571,1.265823e-01,3.350804e-01,1.000000e+00,44/123,25.67%,HSPA8;PPIL1;SNRNP40;SNRPC;USP39;SNRPD3;PRPF4;LSM3;THOC3;CWC15;SNRPA1;EIF4A3;LSM2;PRPF38A;LSM4;DDX46;SF3A2;SNRPB;SNRPD1;ALYREF;MAGOHB;PHF5A;BUD31;TXNL4A;SNRPD2;LSM7;U2AF1L4;SRSF7;RBMX;SNRPG;SF3A3;SNRPF;EFTUD2;SNRPB2;PRPF31;U2AF2;PUF60;SRSF9;SNW1;SNRNP27;ZMAT2;AQR;SRSF3;SF3B5
+prerank,Cell adhesion molecules,-0.35537038741096844,-1.2014077940744647,1.971253e-01,4.922137e-01,1.000000e+00,7/30,9.84%,HLA-B;HLA-E;CADM1;NLGN2;ICOSLG;ALCAM;HLA-A
+prerank,cAMP signaling pathway,-0.2801289795027119,-1.1894572616667305,1.599190e-01,5.126749e-01,1.000000e+00,16/84,9.59%,EDN2;GABBR1;PDE4B;CALML4;FOS;JUN;PPP1R1B;SSTR1;CACNA1D;PLD2;VAV2;SOX9;CREBBP;PTCH1;EP300;GRIN1
+prerank,Thyroid hormone signaling pathway,-0.27619309166422956,-1.1880525016797086,1.459566e-01,5.045526e-01,1.000000e+00,35/82,28.66%,NOTCH1;NCOA2;MED14;PLCB1;PRKCA;MED13;THRB;CREBBP;EP300;MED12;KAT2A;MED13L;MED30;KAT2B;PLCG1;MDM2;NCOA3;PDPK1;NRAS;ITGAV;TSC2;NOTCH2;PRKACB;MED1;THRA;ATP2A3;PFKP;RCAN2;SRC;NOTCH4;MYC;STAT1;MED4;PIK3R1;MED24
+prerank,Pertussis,0.3341233593802331,1.1871728466089237,1.980000e-01,3.576373e-01,1.000000e+00,15/34,29.74%,SFTPA2;RHOA;CFL2;CALM3;CFL1;CALM2;GNAI2;CALM1;MAPK9;IRAK4;MAPK13;GNAI3;ITGB1;NFKB1;TIRAP
+prerank,Epithelial cell signaling in Helicobacter pylori infection,0.3112607019076128,1.1811288497807586,1.865385e-01,3.637009e-01,1.000000e+00,14/46,22.75%,ATP6V0D1;RAC1;ATP6V1B2;CHUK;ATP6V1E1;ATP6V1C2;ATP6V0E1;LYN;ATP6AP1;ATP6V1H;ATP6V0E2;MAP2K4;ATP6V1F;MAPK9
+prerank,Measles,-0.2822290938308053,-1.1785700607042686,1.756487e-01,5.181261e-01,1.000000e+00,11/79,11.66%,HSPA6;HSPA1L;HSPA1A;FOS;JUN;HSPA1B;MX1;CDKN1B;IRF9;TRADD;DDX58
+prerank,Transcriptional misregulation in cancer,-0.2826820120813005,-1.1763421106725418,1.607843e-01,5.130781e-01,1.000000e+00,31/84,24.18%,NUPR1;GADD45B;KMT2A;AFF1;GADD45G;BAIAP3;ATM;MEF2C;CCNT2;KLF3;ZBTB17;IGFBP3;CDKN1B;ELK4;BIRC3;KDM6A;JMJD1C;FUS;MDM2;MAF;LDB1;DDB2;GADD45A;BIRC2;HOXA11;CDKN1A;CCNT1;TAF15;REL;ID2;SS18
+prerank,Retrograde endocannabinoid signaling,0.2816152784388974,1.1701500765797355,1.768061e-01,3.790256e-01,1.000000e+00,22/76,17.24%,NDUFS7;NDUFB9;NDUFS8;NDUFA6;NDUFB11;NDUFA10;NDUFB4;GNG5;NDUFC1;NDUFA4;NDUFA3;NDUFS3;NDUFA9;NDUFV2;NDUFA4L2;NDUFS2;NDUFS4;NDUFA7;NDUFC2;NDUFB10;GNAI2;NDUFA12
+prerank,Glycosphingolipid biosynthesis,0.3823427261780785,1.1664058027503794,2.618557e-01,3.808060e-01,1.000000e+00,9/21,24.75%,GLA;B4GALT1;GLB1;B4GALT3;NAGA;ST3GAL3;B3GNT4;B3GALNT1;B4GALT2
+prerank,Pyruvate metabolism,0.3327108343195769,1.1592004659468509,2.535497e-01,3.894311e-01,1.000000e+00,23/34,38.23%,ALDH9A1;FH;GRHPR;MDH2;ACACA;ME1;ALDH1B1;ACAT2;ME2;PC;GLO1;PCK2;PDHB;DLD;ACSS1;HAGH;ADH5;ACAT1;ACSS2;AKR1A1;DLAT;ALDH3A2;ALDH7A1
+prerank,Phospholipase D signaling pathway,-0.28583300760393304,-1.157225723426516,2.289916e-01,5.560957e-01,1.000000e+00,18/63,19.61%,PLCB1;PRKCA;INSR;GNA13;PLD2;TSC1;DGKQ;PTK2B;CYTH2;RALGDS;CYTH1;PLCG1;EGF;SOS2;NRAS;AGPAT2;TSC2;DGKE
+prerank,Choline metabolism in cancer,-0.2848965337220936,-1.1570827636634207,2.296451e-01,5.448339e-01,1.000000e+00,15/59,19.61%,FOS;JUN;PRKCA;WASF1;PLD2;TSC1;DGKQ;RALGDS;PLCG1;EGF;SOS2;PDPK1;NRAS;TSC2;DGKE
+prerank,Non-small cell lung cancer,-0.30520546531348974,-1.1458186685048777,2.464066e-01,5.643072e-01,1.000000e+00,16/48,20.40%,GADD45B;PRKCA;GADD45G;FOXO3;PLCG1;EGF;SOS2;DDB2;PDPK1;KIF5C;NRAS;KIF5B;GADD45A;E2F3;CDKN1A;RASSF1
+prerank,Lysine degradation,-0.3015027044506575,-1.1445657787760133,2.452830e-01,5.566749e-01,1.000000e+00,10/43,10.26%,KMT2D;PLOD2;KMT2E;KMT2A;SETD1B;SETD1A;PRDM2;KMT2C;KMT2B;ASH1L
+prerank,TNF signaling pathway,-0.2830849267031081,-1.1432368027234576,2.222222e-01,5.493420e-01,1.000000e+00,19/62,24.77%,RPS6KA5;FOS;JUN;MAP3K8;CFLAR;BCL3;BIRC3;TRADD;JUNB;MAP2K7;CREB3L2;TRAF3;MAPK11;BIRC2;MAP3K7;TAB1;CREB1;TAB3;BAG4
+prerank,FoxO signaling pathway,-0.2669437447842169,-1.1423288616793137,2.306122e-01,5.412195e-01,1.000000e+00,28/91,18.21%,GADD45B;GADD45G;PLK2;TGFBR1;PRKAA2;FOXO3;INSR;ATM;CCNG2;FBXO32;CREBBP;EP300;SMAD3;CDKN1B;BNIP3;TGFB1;MDM2;PRKAB2;PRKAA1;EGF;HOMER3;GABARAPL1;SOS2;MAPK11;PDPK1;BCL2L11;NRAS;GADD45A
+prerank,Melanogenesis,-0.30660716690505757,-1.1370525701223988,2.304440e-01,5.457614e-01,1.000000e+00,17/44,24.33%,CALML4;PLCB1;PRKCA;FZD1;LEF1;CREBBP;EP300;GNAI1;CREB3L2;NRAS;CAMK2B;CAMK2G;DVL1;ADCY6;PRKACB;CREB1;FZD6
+prerank,Endocrine and other factor-regulated calcium reabsorption,0.35289611337655785,1.1332023426950377,2.662835e-01,4.383066e-01,1.000000e+00,10/24,22.84%,ATP1B1;CLTB;ATP1A1;AP2S1;GNAS;CLTA;AP2A1;AP2M1;CLTC;ATP2B1
+prerank,Sphingolipid metabolism,0.3349224826098304,1.1279424706011756,2.721893e-01,4.450940e-01,1.000000e+00,8/29,18.90%,GLA;GLB1;SMPD1;GBA;CERS4;ASAH1;DEGS1;UGT8
+prerank,Cholesterol metabolism,0.3542137978455825,1.1266940710590225,3.015564e-01,4.425809e-01,1.000000e+00,11/21,28.98%,VDAC3;SOAT1;LIPA;LDLRAP1;VAPB;NPC2;VDAC2;NCEH1;SORT1;PLTP;LRPAP1
+prerank,Renin secretion,-0.34056717936183334,-1.1195784379439275,2.953157e-01,5.848643e-01,1.000000e+00,6/28,5.32%,EDN2;ITPR1;CALML4;PLCB1;ITPR3;CACNA1D
+prerank,Chemical carcinogenesis,0.25404347489637263,1.111514575143328,2.490040e-01,4.702988e-01,1.000000e+00,19/106,14.28%,UGT2B15;MAP2K2;BIRC5;CBR1;GSTT1;GSTM4;RPS6KB2;EPHX1;RPS6KA1;GSTM3;CDC6;MGST1;KPNA2;HSP90AB1;PIK3CB;GNAS;RPS6KA3;HSP90B1;HSD11B1L
+prerank,Necroptosis,0.26480789554391165,1.1047501096937657,2.768924e-01,4.792016e-01,1.000000e+00,23/80,26.20%,SLC25A5;VDAC3;GLUD1;PPIA;PARP1;TNFSF10;FAF1;CAPN2;AIFM1;HSP90AB1;SMPD1;CHMP6;FAS;PPID;CHMP2A;MAPK9;CHMP4B;PGAM5;SHARPIN;DNM1L;VDAC2;FTL;IFNGR1
+prerank,Central carbon metabolism in cancer,0.2860610788518582,1.1042694252471261,3.007663e-01,4.743991e-01,1.000000e+00,8/49,12.51%,MAP2K2;FGFR3;SLC7A5;TP53;PIK3CB;PGAM1;IDH1;HK1
+prerank,Relaxin signaling pathway,-0.27167353233130725,-1.1029735907055076,2.721774e-01,6.225784e-01,1.000000e+00,14/68,17.82%,VEGFA;FOS;JUN;PLCB1;PRKCA;TGFBR1;GNAI1;TGFB1;MAP2K7;CREB3L2;VEGFB;SOS2;MAPK11;NRAS
+prerank,Melanoma,0.30517955484236076,1.1022787167515804,2.944664e-01,4.732484e-01,1.000000e+00,6/41,10.31%,IGF1;MAP2K2;CDK4;TP53;POLK;PIK3CB
+prerank,cGMP-PKG signaling pathway,-0.2638179685958394,-1.1006547504101964,2.901961e-01,6.175127e-01,1.000000e+00,11/78,6.34%,KCNJ8;ITPR1;KCNMB4;CALML4;PLCB1;GTF2IRD1;ITPR3;CACNA1D;INSR;GNA13;MEF2C
+prerank,Glucagon signaling pathway,-0.27017271827866873,-1.0994456795469967,2.718053e-01,6.102209e-01,1.000000e+00,19/69,20.33%,ITPR1;CALML4;CPT1B;ACACB;PLCB1;ITPR3;PRKAA2;CREBBP;CRTC2;EP300;PHKA2;SIK1;PRKAB2;PRKAA1;CREB3L2;PPP3CC;CAMK2B;SIRT1;CAMK2G
+prerank,Protein processing in endoplasmic reticulum,0.2414754012917777,1.0993302757666559,2.620424e-01,4.746390e-01,1.000000e+00,50/147,27.09%,HSPA8;DAD1;HSPBP1;PDIA6;PDIA4;BCAP31;DERL3;CUL1;CAPN2;SEC13;RPN1;EIF2AK1;SEC61G;EIF2S1;HSP90AB1;CALR;RAD23A;BAG2;PREB;ERP29;TUSC3;CANX;HSP90B1;TXNDC5;VCP;SEC23B;BAK1;SSR2;SSR3;SKP1;DDOST;DERL2;RPN2;STUB1;PDIA3;HYOU1;RNF185;UBE2J2;DNAJC1;DNAJB11;MAPK9;UBE2G1;GANAB;HSPA5;UGGT1;SEC31A;LMAN2;SAR1B;PLAA;UBE2J1
+prerank,Gastric acid secretion,-0.32126952227244876,-1.098013298683866,3.257261e-01,6.036688e-01,1.000000e+00,5/30,4.90%,ITPR1;CALML4;PLCB1;PRKCA;ITPR3
+prerank,Apoptosis,0.25100835623745504,1.094987365867574,2.563107e-01,4.788265e-01,1.000000e+00,23/98,17.43%,PARP4;MAP2K2;BIRC5;CTSZ;TUBA1B;TUBA1C;PARP1;ENDOG;TNFSF10;CAPN2;LMNB2;TP53;CHUK;AIFM1;CTSB;EIF2S1;PIK3CB;CTSD;BAK1;LMNB1;DIABLO;FAS;PIK3R2
+prerank,Type II diabetes mellitus,-0.3518480540280283,-1.0939329697171347,3.347193e-01,6.048324e-01,1.000000e+00,5/21,12.03%,CACNA1D;INSR;SOCS4;HK2;SOCS2
+prerank,Glycerophospholipid metabolism,0.28788220889625016,1.0924564940633028,3.036437e-01,4.791477e-01,1.000000e+00,5/50,6.07%,MBOAT2;PTDSS1;CDS2;ADPRM;PEMT
+prerank,Proteoglycans in cancer,-0.2437426770976538,-1.0905516710632075,2.644788e-01,6.046022e-01,1.000000e+00,30/116,20.38%,ITPR1;IHH;VEGFA;PPP1R12B;HBEGF;PRKCA;CBL;ITPR3;FZD1;VAV2;CD44;PTCH1;ARHGEF1;FN1;TGFB1;PLCG1;MDM2;FRS2;ROCK1;SOS2;MAPK11;PDPK1;NRAS;HSPG2;ITGAV;CAMK2B;ARHGEF12;CDKN1A;CAMK2G;PPP1R12C
+prerank,mTOR signaling pathway,0.2500718588637648,1.0902552052780465,2.989899e-01,4.788897e-01,1.000000e+00,31/109,22.60%,IGF1;MAP2K2;RHOA;WNT11;LAMTOR1;SLC7A5;RPS6KB2;RPS6KA1;ATP6V1B2;RPS6;CHUK;SEC13;STK11;ATP6V1E1;ATP6V1C2;PIK3CB;SKP2;MAPKAP1;CAB39L;RPS6KA3;RPTOR;ATP6V1H;PIK3R2;MLST8;EIF4E2;TBC1D7;AKT1S1;STRADB;ATP6V1F;EIF4E;EIF4B
+prerank,Cortisol synthesis and secretion,-0.3157034957243566,-1.0901468861526291,3.101392e-01,5.957389e-01,1.000000e+00,10/29,23.36%,ITPR1;PLCB1;ITPR3;CACNA1D;NR4A1;CREB3L2;PDE8A;ADCY6;PRKACB;CREB1
+prerank,Antigen processing and presentation,-0.30768219533302094,-1.0896131949805368,3.069106e-01,5.874857e-01,1.000000e+00,6/35,4.61%,HSPA6;HSPA1L;HSPA1A;HSPA1B;HLA-B;HLA-E
+prerank,Kaposi sarcoma-associated herpesvirus infection,-0.24289573707213355,-1.0857447636622668,2.768924e-01,5.888323e-01,1.000000e+00,29/114,20.25%,ITPR1;VEGFA;CALML4;FOS;JUN;HLA-B;HLA-E;ITPR3;LEF1;CREBBP;EP300;HLA-A;UBC;IRF9;TRADD;MAPKAPK2;PLCG1;TYK2;GABARAPL1;ATG14;MAP2K7;TRAF3;MAPK11;NRAS;NFATC3;IL6ST;PPP3CC;E2F3;CDKN1A
+prerank,ErbB signaling pathway,-0.2688206197467449,-1.0835752898402566,2.997988e-01,5.857550e-01,1.000000e+00,23/60,30.28%,JUN;HBEGF;PRKCA;CBL;PAK6;CDKN1B;PLCG1;EGF;MAP2K7;SOS2;NRAS;CAMK2B;CDKN1A;CAMK2G;ELK1;CRK;ERBB2;SRC;MYC;PIK3R1;CBLB;HRAS;MTOR
+prerank,C-type lectin receptor signaling pathway,-0.273054527337749,-1.0824212146635668,3.036053e-01,5.800179e-01,1.000000e+00,16/59,19.63%,ITPR1;CALML4;JUN;ITPR3;BCL3;CARD9;IRF9;MAPKAPK2;MDM2;MALT1;CYLD;MAPK11;NRAS;NFATC3;PPP3CC;ARHGEF12
+prerank,Endocytosis,-0.22568065356592096,-1.0751219753634185,2.762097e-01,5.895685e-01,1.000000e+00,35/179,16.61%,HSPA6;DAB2;HSPA1L;HSPA1A;ACAP1;HSPA1B;CBL;IQSEC2;HLA-B;ARFGAP1;HLA-E;TGFBR1;DNAJC6;PLD2;PSD;RAB11FIP4;CYTH2;SMAD3;HLA-A;STAM2;EPN2;CYTH1;ASAP1;PARD6B;VPS36;IQSEC1;MDM2;ARAP1;WIPF2;ARFGAP3;EEA1;RAB5A;ZFYVE27;ZFYVE16;CHMP2B
+prerank,Breast cancer,-0.2584980000820499,-1.0669409671043306,3.360489e-01,6.029107e-01,1.000000e+00,28/74,27.00%,NOTCH1;FOS;JUN;DLL1;GADD45B;GADD45G;JAG2;FZD1;LEF1;LRP6;HES1;EGF;NCOA3;SOS2;DDB2;NRAS;GADD45A;E2F3;CDKN1A;DVL1;FRAT2;NOTCH2;APC;FZD6;BRCA2;ERBB2;NOTCH4;MYC
+prerank,Ras signaling pathway,-0.24877699614623885,-1.0645824393342087,3.263158e-01,6.002103e-01,1.000000e+00,24/93,18.61%,VEGFA;ETS2;CALML4;PRKCA;SYNGAP1;PLA2G6;PAK6;RASAL2;INSR;PLD2;RASA2;GRIN1;RALGDS;PLCG1;EGF;NF1;VEGFB;RAB5A;SOS2;SHOC2;PLA2G3;RASA1;NRAS;EFNA1
+prerank,Salmonella infection,0.2209959317749647,1.0629384943736648,3.152610e-01,5.346638e-01,1.000000e+00,42/179,19.07%,MAP2K2;RAC1;RHOA;TUBA1B;ARHGEF26;TUBA1C;DYNLT1;TNFSF10;PFN1;RHOG;ARF1;ARPC1A;ARPC5L;CSE1L;TXN2;CHUK;MYL12B;TUBB;HSP90AB1;CYFIP1;PIK3CB;TUBB3;ARPC2;RPS3;ACTR1A;FBXO22;DYNLL1;CASP4;HSP90B1;RIPK2;KLC3;RAB5C;BAK1;GAPDH;ACTR3;MYL12A;SKP1;ARPC3;VPS33A;PKN1;DCTN3;MAP2K4
+prerank,Pathways in cancer,-0.2114446719533558,-1.0607586108957465,2.888016e-01,6.011230e-01,1.000000e+00,69/266,21.88%,VEGFA;NOTCH1;RPS6KA5;CALML4;FOS;JUN;DLL1;GADD45B;PLCB1;PRKCA;KIF7;LAMA5;CBL;GADD45G;BMP2;JAG2;TGFBR1;FZD1;GNA13;PLD2;LEF1;CREBBP;ZBTB17;PTCH1;ARHGEF1;EP300;IL4R;FN1;SMAD3;CDKN1B;RALGDS;PPARD;BIRC3;LRP6;GNAI1;TGFB1;PLEKHG5;IL6R;HES1;PLCG1;DAPK3;EPOR;MDM2;PIM1;EGF;NCOA3;ROCK1;VEGFB;SOS2;TRAF3;DDB2;APAF1;BCL2L11;NRAS;GADD45A;IL6ST;BIRC2;ITGAV;CAMK2B;ARHGEF12;E2F3;CDKN1A;CAMK2G;RASSF1;DVL1;FRAT2;NOTCH2;ELK1;ADCY6
+prerank,Mineral absorption,0.3208752656548056,1.059573129180231,3.638132e-01,5.367191e-01,1.000000e+00,10/28,25.63%,ATP1B1;ATP1A1;HMOX2;STEAP1;HMOX1;SLC31A1;MT2A;ATP2B1;SLC46A1;FTL
+prerank,Long-term potentiation,-0.28228812647555046,-1.0593166722759446,3.665339e-01,5.962547e-01,1.000000e+00,8/41,9.59%,ITPR1;CALML4;PLCB1;PRKCA;ITPR3;CREBBP;EP300;GRIN1
+prerank,Calcium signaling pathway,-0.2559140466545754,-1.0478613718842895,3.655706e-01,6.184905e-01,1.000000e+00,14/72,12.49%,ITPR1;VEGFA;CALML4;MST1;PLCB1;PRKCA;ITPR3;CACNA1D;PTK2B;TPCN1;GRIN1;PHKA2;ORAI2;PLCG1
+prerank,Bladder cancer,-0.30365596978208265,-1.040488226833886,3.620000e-01,6.293118e-01,1.000000e+00,14/33,27.00%,VEGFA;RPS6KA5;HBEGF;DAPK3;MDM2;EGF;NRAS;E2F3;CDKN1A;RASSF1;DAPK2;ERBB2;SRC;MYC
+prerank,Carbohydrate digestion and absorption,0.35116456416418973,1.0390867340722016,4.003759e-01,5.803500e-01,1.000000e+00,6/18,17.43%,ATP1B1;ATP1A1;PIK3CB;HK1;G6PC3;PIK3R2
+prerank,Inflammatory mediator regulation of TRP channels,-0.273266832411027,-1.031387801859176,3.979167e-01,6.457931e-01,1.000000e+00,7/45,4.90%,ITPR1;ASIC3;CALML4;PLCB1;PRKCA;PLA2G6;ITPR3
+prerank,IL-17 signaling pathway,-0.27586705089105984,-1.0222482121395124,4.262948e-01,6.621745e-01,1.000000e+00,12/41,24.12%,FOS;JUN;TRADD;IL17RE;MAPK15;TRAF3;MAPK11;JUND;MAP3K7;TAB3;IL17RB;MAPK7
+prerank,Pancreatic secretion,-0.29088948511389495,-1.0220580853139813,4.054054e-01,6.537840e-01,1.000000e+00,5/32,4.90%,TRPC1;ITPR1;PLCB1;PRKCA;ITPR3
+prerank,Human cytomegalovirus infection,-0.22096688912013673,-1.0217081519559972,4.075630e-01,6.460470e-01,1.000000e+00,37/134,23.36%,ITPR1;VEGFA;CALML4;PLCB1;PRKCA;HLA-B;HLA-E;ITPR3;GNA13;TSC1;ARHGEF1;PTK2B;HLA-A;TRADD;GNAI1;IL6R;MDM2;TAP1;ROCK1;CREB3L2;SOS2;MAPK11;NRAS;NFATC3;PPP3CC;ITGAV;TSC2;ARHGEF12;E2F3;CDKN1A;ELK1;ADCY6;HLA-C;TAPBP;CRK;PRKACB;CREB1
+prerank,Pathogenic Escherichia coli infection,0.22165246364236404,1.020086674648621,4.036885e-01,6.216805e-01,1.000000e+00,44/127,29.74%,RAC1;RHOA;TUBA1B;TUBA1C;ABCF2;TNFSF10;TMBIM6;ARF1;ARPC1A;ARPC5L;CHUK;SLC9A3R1;TUBB;CYFIP1;TUBB3;ARPC2;RPS3;CASP4;GNA12;MYO1F;IL1R1;BAK1;GAPDH;ACTR3;FAS;ARPC3;CLDN7;TMED10;BRK1;LPAR2;ARPC4;MAPK9;ABL1;RAB1A;ACTB;TUBB4B;IRAK4;BAIAP2;ARPC1B;FADD;MAPK13;ITGB1;NFKB1;TIRAP
+prerank,Apelin signaling pathway,-0.24101781029591496,-1.011411224478818,4.192229e-01,6.654526e-01,1.000000e+00,16/73,17.82%,ITPR1;CALML4;PLCB1;ITPR3;TGFBR1;PRKAA2;GNA13;MEF2C;HDAC4;SMAD3;GNAI1;PRKAB2;PRKAA1;GABARAPL1;MEF2D;NRAS
+prerank,Hepatitis B,-0.22690546988085303,-1.0071704487425586,4.658869e-01,6.691244e-01,1.000000e+00,26/104,20.25%,MAP3K1;FOS;JUN;PRKCA;TGFBR1;CREBBP;DDX3X;EP300;PTK2B;SMAD3;DDX58;TGFB1;TYK2;MAP2K7;CREB3L2;SOS2;TRAF3;DDB2;MAPK11;APAF1;NRAS;NFATC3;HSPG2;MAP3K7;E2F3;CDKN1A
+prerank,Fanconi anemia pathway,0.2783621021471472,1.0071003321786396,4.201183e-01,6.487128e-01,1.000000e+00,13/40,25.31%,UBE2T;RPA1;POLK;BRCA1;WDR48;FANCE;FANCC;RPA3;FANCM;RAD51;MLH1;FANCI;EME1
+prerank,PPAR signaling pathway,0.27951969531061044,1.0060192062683144,4.341564e-01,6.447317e-01,1.000000e+00,17/38,30.30%,FABP7;FADS2;DBI;ME1;ACSL3;HMGCS2;ACSBG1;FABP5;ACSL1;ACOX3;PCK2;CPT2;ILK;ACAA1;PLTP;SLC27A4;CPT1A
+prerank,Glioma,0.26367458770466645,1.0035909187355618,4.381139e-01,6.443192e-01,1.000000e+00,8/52,10.53%,IGF1;MAP2K2;CDK4;CALM3;TP53;POLK;PIK3CB;CALM2
+prerank,Hippo signaling pathway,-0.23574918581868196,-1.0021752239849642,4.361055e-01,6.746457e-01,1.000000e+00,33/81,29.86%,SMAD7;BMP2;TGFBR1;FZD1;BMPR2;DLG5;MOB1B;LEF1;YAP1;SMAD3;BIRC3;PARD6B;TGFB1;FRMD6;PPP2CB;BIRC2;WWTR1;LATS1;RASSF1;DVL1;APC;YWHAG;ID2;CSNK1E;FZD6;PPP2R1B;SCRIB;MYC;PPP1CB;SAV1;SMAD4;STK3;LIMD1
+prerank,Longevity regulating pathway,-0.2392042303756758,-1.0014491412350506,4.626263e-01,6.684050e-01,1.000000e+00,9/77,6.33%,HSPA6;HSPA1L;HSPA1A;HSPA1B;PRKAA2;FOXO3;INSR;TSC1;SESN3
+prerank,Signaling pathways regulating pluripotency of stem cells,0.24879721060061505,0.997661141451885,4.567404e-01,6.530874e-01,1.000000e+00,5/69,3.26%,IGF1;MAP2K2;TCF3;WNT11;FGFR3
+prerank,Rheumatoid arthritis,0.3081514506363851,0.9976246490504586,4.442270e-01,6.466433e-01,1.000000e+00,10/24,21.19%,ATP6V0D1;ATP6V1B2;ATP6V1E1;ATP6V1C2;ATP6V0E1;ATP6AP1;ATP6V1H;ACP5;ATP6V0E2;ATP6V1F
+prerank,Autophagy,-0.22074445460017894,-0.9864873620074968,4.709544e-01,7.009665e-01,1.000000e+00,26/117,19.51%,ITPR1;DDIT4;ERN1;PRKAA2;TSC1;ATG2A;ATG2B;ATG9B;C9orf72;CFLAR;BNIP3;RB1CC1;DAPK3;RAB33B;ULK1;PRKAA1;GABARAPL1;SUPT20H;ATG14;PPP2CB;PDPK1;RAB39B;NRAS;MTMR3;MAP3K7;TSC2
+prerank,Cocaine addiction,0.3125762083772091,0.9859240697854308,4.709544e-01,6.705112e-01,1.000000e+00,2/22,0.51%,GRIN3A;MAOA
+prerank,Aldosterone synthesis and secretion,-0.26228071085575466,-0.9833297304793274,5.059055e-01,7.012076e-01,1.000000e+00,6/43,5.32%,ITPR1;CALML4;PLCB1;PRKCA;ITPR3;CACNA1D
+prerank,Other types of O-glycan biosynthesis,0.3063326519934264,0.9681103227074258,4.903846e-01,7.107060e-01,1.000000e+00,10/22,27.88%,B4GALT1;GALNT8;POFUT1;B4GALT3;ST3GAL3;GALNT18;RFNG;GALNT2;B4GALT2;C1GALT1C1
+prerank,Hedgehog signaling pathway,-0.29178506920618186,-0.9661499903069043,5.029821e-01,7.384003e-01,1.000000e+00,3/27,8.21%,IHH;KIF7;PTCH1
+prerank,Human T-cell leukemia virus 1 infection,0.20891477630138353,0.9616978570044942,5.597484e-01,7.204273e-01,1.000000e+00,31/136,20.09%,TBPL1;PPP3CA;MAP2K2;SLC25A5;TCF3;VDAC3;PTTG1;GPS2;FDPS;ANAPC5;CDK4;TP53;CHUK;RANBP1;CDC20;RAN;CALR;PIK3CB;CANX;CCNB2;ANAPC7;IL1R1;CHEK2;ANAPC10;PPP3R1;PIK3R2;MAP2K4;CDK2;CCNE1;MAD2L1;CREB3L4
+prerank,Starch and sucrose metabolism,-0.33143160622574397,-0.9599444555808307,5.122449e-01,7.458785e-01,1.000000e+00,4/17,10.58%,PGM2L1;GBE1;HK2;TREH
+prerank,Prolactin signaling pathway,-0.25641415291219183,-0.9513088131346856,5.468085e-01,7.600157e-01,1.000000e+00,15/43,30.03%,FOS;FOXO3;SOCS4;SOCS2;PRLR;SOS2;MAPK11;NRAS;SOCS6;ELF5;SRC;SOCS5;STAT1;PIK3R1;HRAS
+prerank,Amphetamine addiction,0.2707758810765146,0.9458339497658376,5.408163e-01,7.551338e-01,1.000000e+00,13/35,22.53%,GRIN3A;MAOA;PPP3CA;PPP1CA;CALM3;CALM2;GNAS;HDAC1;PPP3R1;HDAC2;CREB3L4;PPP1CC;CALM1
+prerank,Viral carcinogenesis,0.2053095387521376,0.9424448383111277,5.978947e-01,7.570760e-01,1.000000e+00,30/133,21.48%,TBPL1;ATP6V0D1;VDAC3;GTF2E2;RAC1;RHOA;CDK4;SND1;TP53;YWHAE;PSMC1;GTF2H2C;RANBP1;CDC20;DNAJA3;PIK3CB;SKP2;YWHAB;LYN;HDAC1;BAK1;YWHAQ;PIK3R2;GTF2B;CDK2;CCNE1;HDAC2;CREB3L4;GTF2E1;UBE3A
+prerank,Hepatitis C,0.21544029895823583,0.9340392326436932,5.831703e-01,7.721337e-01,1.000000e+00,19/98,19.74%,MAP2K2;PPP2R2A;CDK4;TP53;YWHAE;CHUK;EIF2AK1;EIF2S1;PIK3CB;PPP2R1A;YWHAB;CD81;PSME3;BAK1;FAS;YWHAQ;PIK3R2;CDK2;CLDN7
+prerank,Long-term depression,0.2711650958926303,0.9334160708369823,5.497186e-01,7.664992e-01,1.000000e+00,8/31,17.20%,IGF1;MAP2K2;PPP2R1A;GNAS;GNA11;LYN;GNA12;GNAI2
+prerank,Focal adhesion,-0.21151134372264682,-0.9228565103180071,5.987780e-01,8.276876e-01,1.000000e+00,22/104,19.25%,VEGFA;PPP1R12B;JUN;COL6A1;COL6A2;PRKCA;LAMA5;PAK6;VAV2;ARHGAP35;FN1;BIRC3;THBS3;EGF;ZYX;ROCK1;VEGFB;SOS2;PDPK1;ARHGAP5;BIRC2;ITGAV
+prerank,T cell receptor signaling pathway,-0.23395174891064213,-0.9219560583169712,5.739645e-01,8.207779e-01,1.000000e+00,15/57,19.39%,FOS;JUN;PAK6;VAV2;MAP3K8;PLCG1;MAP2K7;MALT1;SOS2;MAPK11;PDPK1;NRAS;NFATC3;PPP3CC;MAP3K7
+prerank,Gap junction,-0.24265220232320872,-0.921896513460792,5.743381e-01,8.116481e-01,1.000000e+00,17/45,27.59%,ITPR1;PLCB1;PRKCA;ITPR3;MAP3K2;GNAI1;EGF;SOS2;NRAS;TUBA1A;ADCY6;TJP1;PRKACB;MAPK7;GJA1;SRC;GNAQ
+prerank,Nicotinate and nicotinamide metabolism,0.29849671519050613,0.9187507093146169,5.797373e-01,7.971631e-01,1.000000e+00,2/20,1.67%,QPRT;PNP
+prerank,Arrhythmogenic right ventricular cardiomyopathy,-0.2745741686187131,-0.913599231761146,5.925197e-01,8.242877e-01,1.000000e+00,3/28,7.26%,SGCD;CACNA1D;LEF1
+prerank,Amino sugar and nucleotide sugar metabolism,0.26044341993613845,0.9099342814595367,5.942857e-01,8.127524e-01,1.000000e+00,17/36,38.95%,PGM1;GMDS;GNPNAT1;HK1;MPI;GNE;PMM2;NANS;GALK1;CYB5R1;HEXA;HEXB;CYB5RL;PGM3;GNPDA1;GALT;UGDH
+prerank,Epstein-Barr virus infection,0.20028267416692355,0.9091378388209863,6.810176e-01,8.074054e-01,1.000000e+00,31/126,20.51%,PSMD8;RAC1;PSMC4;PSMD1;CDK4;TP53;PSMC1;PSMD2;PSMD6;CHUK;POLK;ADRM1;CALR;PIK3CB;PSMC3;PSMD3;SKP2;LYN;HDAC1;BAK1;FAS;PIK3R2;PSMD14;MAP2K4;CDK2;NEDD4;CCNE1;PSMD13;HDAC2;PSMD7;PDIA3
+prerank,Fluid shear stress and atherosclerosis,0.21826280831995404,0.9075570510594726,6.452906e-01,8.040606e-01,1.000000e+00,16/81,14.91%,RAC1;RHOA;GSTT1;GSTM4;CALM3;GSTM3;TP53;MGST1;TXN2;CHUK;HSP90AB1;PIK3CB;CALM2;HMOX1;HSP90B1;IL1R1
+prerank,Tight junction,0.20807403242178027,0.9049391990350918,6.482890e-01,8.034491e-01,1.000000e+00,44/106,33.26%,PARD3;RAC1;PCNA;RHOA;TUBA1B;TUBA1C;PPP2R2A;CDK4;ARPC1A;HSPA4;ARPC5L;MYL12B;STK11;SLC9A3R1;PPP2R1A;ARPC2;PRKAG2;ACTR3;MYL12A;ARPC3;NEDD4;CLDN7;ARPC4;MAPK9;PARD6A;LLGL1;RAB8A;MARVELD2;ACTB;PRKAG1;YBX3;MARVELD3;ARPC1B;PRKAB1;ITGB1;PARD6G;ACTN1;AMOTL1;OCLN;ACTG1;MYH9;PRKCI;PPP2CA;ARHGEF18
+prerank,Sphingolipid signaling pathway,0.21545308816960165,0.9044905675744229,6.222664e-01,7.974527e-01,1.000000e+00,17/82,17.48%,MAP2K2;RAC1;RHOA;PPP2R2A;TP53;PIK3CB;PPP2R1A;SMPD1;CTSD;CERS4;ASAH1;GNA12;PPP2R3C;DEGS1;GNAI2;PIK3R2;NSMAF
+prerank,Small cell lung cancer,-0.2314845647808188,-0.9032880631840027,6.276803e-01,8.424725e-01,1.000000e+00,15/57,20.25%,GADD45B;LAMA5;GADD45G;ZBTB17;FN1;CDKN1B;BIRC3;TRAF3;DDB2;APAF1;GADD45A;BIRC2;ITGAV;E2F3;CDKN1A
+prerank,B cell receptor signaling pathway,0.24559340118254117,0.9000204773668344,5.949612e-01,8.019824e-01,1.000000e+00,10/43,17.53%,PPP3CA;MAP2K2;RAC1;CHUK;PIK3CB;LYN;CD81;PPP3R1;PIK3R2;PIK3AP1
+prerank,Osteoclast differentiation,-0.22826566348115282,-0.8984216109038389,6.288032e-01,8.460133e-01,1.000000e+00,17/56,23.92%,FOS;JUN;TGFBR1;IRF9;JUNB;TGFB1;TYK2;MAP2K7;CYLD;MAPK11;JUND;PPP3CC;MAP3K7;FOSL2;TAB1;CREB1;STAT2
+prerank,Regulation of lipolysis in adipocytes,-0.2774361328184113,-0.896648480078906,6.219008e-01,8.411069e-01,1.000000e+00,4/24,11.56%,MGLL;INSR;PTGS1;GNAI1
+prerank,Colorectal cancer,-0.2201571996277063,-0.8913898659380738,6.790890e-01,8.455685e-01,1.000000e+00,15/66,18.21%,FOS;JUN;GADD45B;GADD45G;TGFBR1;LEF1;SMAD3;RALGDS;TGFB1;EGF;SOS2;DDB2;BCL2L11;NRAS;GADD45A
+prerank,HIF-1 signaling pathway,-0.2090778298866668,-0.8784217422915438,6.995885e-01,8.692737e-01,1.000000e+00,14/74,14.27%,VEGFA;ENO2;PRKCA;PFKFB3;INSR;MKNK1;CREBBP;EP300;CDKN1B;HK2;IL6R;PLCG1;PDK1;EGF
+prerank,Thyroid hormone synthesis,0.2555305762012802,0.8778786969780481,6.476190e-01,8.487356e-01,1.000000e+00,8/31,14.09%,ATP1B1;PDIA4;ATP1A1;GPX1;GPX7;GNAS;CANX;HSP90B1
+prerank,Tuberculosis,0.20504393360387366,0.8721756371826503,7.208333e-01,8.540357e-01,1.000000e+00,34/86,33.88%,PPP3CA;ATP6V0D1;RHOA;CALM3;HSPA9;NFYC;CALM2;RFXANK;CYP27B1;CTSD;CIITA;ATP6AP1;RIPK2;RAB5C;ATP6V1H;PPP3R1;CALM1;MAPK9;HSPD1;IFNGR1;IRAK4;FADD;MAPK13;BAD;NFKB1;TIRAP;ATP6V0B;PPP3CB;RAB5B;RAB7A;LAMP1;IRAK1;AKT3;SYK
+prerank,Shigellosis,0.18635889533890274,0.8716687160952618,7.690722e-01,8.479788e-01,1.000000e+00,35/162,19.94%,RPS27A;RAC1;RHOA;UBB;RPS6KB2;TECPR1;CUL1;PFN1;CAPN2;ARF1;ARPC1A;ARPC5L;TP53;CHUK;MYL12B;CAPNS1;UBE2N;PIK3CB;ARPC2;HK1;CASP4;UBA52;RIPK2;IL1R1;RPTOR;ACTR3;U2AF1L4;MYL12A;SKP1;PIK3R2;GABARAPL2;ARPC3;PPID;CALCOCO2;AKT1S1
+prerank,Prostate cancer,0.21820747614386046,0.8708962625026003,6.851485e-01,8.427877e-01,1.000000e+00,11/62,20.09%,IGF1;MAP2K2;TP53;CHUK;HSP90AB1;PIK3CB;HSP90B1;PIK3R2;CDK2;CCNE1;CREB3L4
+prerank,Fc gamma R-mediated phagocytosis,0.22282802512137592,0.8688297978413371,7.019231e-01,8.403187e-01,1.000000e+00,13/60,18.34%,RAC1;RPS6KB2;CFL2;ARPC1A;ARPC5L;CFL1;PIK3CB;ARPC2;LYN;ACTR3;PIK3R2;MARCKSL1;ARPC3
+prerank,Ubiquitin mediated proteolysis,0.19580665447511078,0.86705461573161,7.572016e-01,8.373302e-01,1.000000e+00,35/117,27.09%,MID1;RPS27A;UBE2C;ANAPC5;UBB;ANAPC13;CUL1;FZR1;CUL2;CDC20;CDC34;UBE2M;BRCA1;UBE2L3;UBE2N;SKP2;SAE1;ANAPC7;UBA52;UBE2I;ANAPC10;UBE3C;SKP1;NEDD4;STUB1;UBE2J2;UBE3A;PIAS4;MGRN1;UBE2G1;UBE2S;CDC27;ITCH;UBE2R2;UBE2J1
+prerank,Natural killer cell mediated cytotoxicity,-0.2269423916221061,-0.8568706775206313,7.111111e-01,9.119803e-01,1.000000e+00,12/47,19.14%,PRKCA;HLA-B;HLA-E;VAV2;PTK2B;SH3BP2;HLA-A;TNFRSF10B;PLCG1;SOS2;NRAS;PPP3CC
+prerank,Dopaminergic synapse,-0.20452525899344587,-0.8556392616190015,7.622951e-01,9.052971e-01,1.000000e+00,8/75,5.32%,ITPR1;CALML4;FOS;PPP1R1B;PLCB1;PRKCA;ITPR3;CACNA1D
+prerank,p53 signaling pathway,-0.22066992973824512,-0.8548614345519111,7.609943e-01,8.978382e-01,1.000000e+00,18/55,20.95%,GADD45B;GADD45G;MDM4;ATM;SESN3;CCNG2;IGFBP3;TNFRSF10B;MDM2;RRM2B;DDB2;APAF1;GADD45A;SIAH1;TSC2;CDKN1A;GORAB;PPM1D
+prerank,Adrenergic signaling in cardiomyocytes,0.2119688206399166,0.8548235159902318,7.426326e-01,8.582324e-01,1.000000e+00,26/69,29.13%,ATP1B1;PPP1CA;PPP2R2A;TPM4;CALM3;ATP1A1;AGTR1;PPP2R1A;CALM2;GNAS;PPP2R3C;GNAI2;ATP2A1;CREB3L4;PPP1CC;PPP2R5A;CALM1;ATP2B1;TPM1;CREB3;TPM3;PPP2R5C;CREM;PPP2R5D;MAPK13;GNAI3
+prerank,Neutrophil extracellular trap formation,0.21687521721872696,0.8418211261552695,7.460317e-01,8.795745e-01,1.000000e+00,5/53,4.74%,MAP2K2;SLC25A5;VDAC3;RAC1;PPIF
+prerank,Leishmaniasis,-0.2513319563271415,-0.8413135426334174,7.200000e-01,9.188867e-01,1.000000e+00,7/28,22.78%,FOS;JUN;TGFB1;MAPK11;MAP3K7;ELK1;TAB1
+prerank,PI3K-Akt signaling pathway,-0.1800582349781007,-0.8401288042307034,8.600000e-01,9.120963e-01,1.000000e+00,35/152,19.51%,DDIT4;VEGFA;COL6A1;COL6A2;PRKCA;LAMA5;PRKAA2;FOXO3;INSR;TSC1;CRTC2;IL4R;FN1;CDKN1B;MAGI1;IL6R;PRLR;EPOR;NR4A1;THBS3;MDM2;PRKAA1;EGF;MCL1;CREB3L2;VEGFB;PPP2CB;SOS2;PDPK1;BCL2L11;NRAS;CDC37;EFNA1;ITGAV;TSC2
+prerank,Adherens junction,-0.22330187994490186,-0.8395301535202613,7.279693e-01,9.042816e-01,1.000000e+00,9/46,13.34%,TGFBR1;INSR;WASF1;LEF1;CREBBP;EP300;SMAD3;CTNND1;YES1
+prerank,Fructose and mannose metabolism,0.2669360178409857,0.8393954895030327,7.043121e-01,8.774688e-01,1.000000e+00,8/22,21.94%,TPI1;GMDS;HK1;MPI;FBP1;ALDOC;PMM2;AKR1B1
+prerank,Insulin signaling pathway,-0.18942961532991856,-0.8325229564081562,8.393235e-01,9.095189e-01,1.000000e+00,18/99,16.43%,PPP1R3C;CALML4;ACACB;CBL;PRKAA2;INSR;TSC1;MKNK1;SOCS4;INPPL1;HK2;PPP1R3E;PHKA2;SOCS2;PRKAB2;PRKAA1;SOS2;PDPK1
+prerank,Neurotrophin signaling pathway,-0.1961453584121073,-0.825853582115581,8.144105e-01,9.137043e-01,1.000000e+00,17/85,17.82%,MAP3K1;RPS6KA5;CALML4;JUN;KIDINS220;FOXO3;PRDM4;MAPKAPK2;PLCG1;FRS2;MAP3K3;MAP2K7;SOS2;MAPK11;PDPK1;SH2B1;NRAS
+prerank,Amoebiasis,0.2345105148483483,0.8244493515501116,7.342799e-01,9.009189e-01,1.000000e+00,9/36,17.43%,ARG2;PRDX1;PIK3CB;GNAS;SERPINB6;GNA11;IL1R1;RAB5C;PIK3R2
+prerank,Cellular senescence,-0.1812299151420632,-0.8177438351871239,8.790787e-01,9.204068e-01,1.000000e+00,28/116,20.39%,ITPR1;CALML4;GADD45B;GADD45G;HLA-B;HLA-E;ITPR3;TGFBR1;CACNA1D;FOXO3;ATM;TSC1;IGFBP3;SMAD3;HLA-A;TGFB1;MAPKAPK2;MDM2;MAPK11;NRAS;GADD45A;NFATC3;PPP3CC;TSC2;E2F3;SIRT1;CDKN1A;HIPK3
+prerank,Pancreatic cancer,-0.20458927573585386,-0.8163159825356514,7.923387e-01,9.142357e-01,1.000000e+00,13/61,20.25%,VEGFA;GADD45B;GADD45G;TGFBR1;PLD2;SMAD3;RALGDS;TGFB1;EGF;DDB2;GADD45A;E2F3;CDKN1A
+prerank,VEGF signaling pathway,0.22513477323474756,0.8105582847951226,7.811900e-01,9.196975e-01,1.000000e+00,3/40,2.42%,PPP3CA;MAP2K2;RAC1
+prerank,Human immunodeficiency virus 1 infection,0.17879007577753583,0.8098388994947437,8.781925e-01,9.137501e-01,1.000000e+00,25/132,17.43%,PPP3CA;MAP2K2;RAC1;CCNB1;GNG5;RPS6KB2;CUL1;CFL2;CDC25C;CALM3;CFL1;CHUK;CALR;PIK3CB;CALM2;SAMHD1;CCNB2;GNA11;AP1M2;BAK1;FAS;PPP3R1;GNAI2;SKP1;PIK3R2
+prerank,Chronic myeloid leukemia,-0.2047552367117811,-0.803686563233228,8.613861e-01,9.274436e-01,1.000000e+00,14/59,20.25%,GADD45B;CBL;GADD45G;TGFBR1;SMAD3;CDKN1B;TGFB1;MDM2;SOS2;DDB2;NRAS;GADD45A;E2F3;CDKN1A
+prerank,Endometrial cancer,-0.210487253712698,-0.8019481991750174,8.073022e-01,9.215724e-01,1.000000e+00,13/48,22.57%,GADD45B;GADD45G;FOXO3;LEF1;EGF;SOS2;DDB2;PDPK1;NRAS;GADD45A;CDKN1A;ELK1;APC
+prerank,mRNA surveillance pathway,-0.19117669469842025,-0.7989728047582672,8.596154e-01,9.180734e-01,1.000000e+00,29/78,29.81%,PNN;SMG1;PABPC1L;PABPN1;SMG6;RNMT;UPF2;ACIN1;PAPOLA;FUS;PCF11;NCBP2;SRRM1;FIP1L1;PPP2CB;CPSF1;CPSF6;NXF1;CPSF4L;UPF3B;PPP2R1B;DDX19A;UPF3A;PAPOLG;PPP1CB;DDX39B;SYMPK;MSI2;NUDT21
+prerank,Influenza A,0.18516362388604735,0.7975263046037409,8.985240e-01,9.286380e-01,1.000000e+00,22/90,26.62%,MAP2K2;SLC25A5;FDPS;RAE1;CDK4;TNFSF10;CHUK;KPNA2;EIF2S1;PIK3CB;CIITA;BAK1;FAS;PIK3R2;CALCOCO2;XPO1;NXT1;CCND3;KPNA1;ACTB;IFNGR1;IRAK4
+prerank,AMPK signaling pathway,0.18770813307100961,0.7936966649177286,8.557692e-01,9.280960e-01,1.000000e+00,26/85,26.52%,IGF1;EEF2;PPP2R2A;RPS6KB2;HMGCR;STK11;ACACA;PIK3CB;PPP2R1A;G6PC3;CAB39L;PPP2R3C;RPTOR;PRKAG2;PIK3R2;FBP1;AKT1S1;CREB3L4;STRADB;PPP2R5A;CREB3;RAB8A;ADIPOR2;PRKAG1;PCK2;PPP2R5C
+prerank,Mitophagy,-0.19970392768501347,-0.79363817421425,8.587571e-01,9.187752e-01,1.000000e+00,14/59,21.57%,JUN;BNIP3L;FOXO3;ATG9B;UBC;BNIP3;RHOT2;ULK1;GABARAPL1;OPTN;NRAS;NBR1;TFEB;TBC1D17
+prerank,Alcoholism,0.20573620219806077,0.7928637708300974,8.000000e-01,9.221293e-01,1.000000e+00,13/57,22.53%,GRIN3A;MAOA;PPP1CA;GNG5;CALM3;CALM2;GNAS;HDAC1;GNAI2;HDAC2;CREB3L4;PPP1CC;CALM1
+prerank,Renal cell carcinoma,-0.19489510277889327,-0.7741650414601557,8.699187e-01,9.396696e-01,1.000000e+00,7/53,11.80%,VEGFA;JUN;PAK6;CREBBP;EP300;FLCN;TGFB1
+prerank,Platelet activation,-0.1875245933680654,-0.7660052109153356,8.752556e-01,9.424211e-01,1.000000e+00,7/64,8.52%,ITPR1;PLCB1;ITPR3;PTGS1;GNA13;ARHGAP35;ARHGEF1
+prerank,Human papillomavirus infection,0.16029817777495972,0.7620908880577791,9.737374e-01,9.627223e-01,1.000000e+00,44/185,24.59%,TBPL1;MAP2K2;TUBG1;ATP6V0D1;PARD3;WNT11;BCAP31;PPP2R2A;RPS6KB2;CDK4;ATP6V1B2;TP53;PSMC1;CHUK;SLC9A3R1;ATP6V1E1;ATP6V1C2;PIK3CB;PPP2R1A;GNAS;ATP6V0E1;HDAC1;ATP6AP1;PPP2R3C;ATP6V1H;BAK1;TADA3;FAS;PIK3R2;ATP6V0E2;CDK2;CCNE1;HDAC2;TUBG2;CREB3L4;ATP6V1F;UBE3A;PPP2R5A;RFNG;PARD6A;LLGL1;LAMC1;CCND3;CREB3
+prerank,Rap1 signaling pathway,0.1765313975232896,0.7583159832857549,9.265306e-01,9.605329e-01,1.000000e+00,11/101,10.53%,IGF1;MAP2K2;PARD3;RAC1;RHOA;FGFR3;PFN1;CALM3;FARP2;PIK3CB;CALM2
+prerank,Acute myeloid leukemia,0.2036597837134795,0.7567452947650468,8.516378e-01,9.554670e-01,1.000000e+00,17/40,37.51%,MAP2K2;RPS6KB2;CHUK;PIK3CB;PIK3R2;CCNA2;BAD;NFKB1;AKT3;GRB2;ARAF;CEBPA;EIF4EBP1;MAPK3;AKT1;MAPK1;BRAF
+prerank,Regulation of actin cytoskeleton,0.16734186193663633,0.7492794558577602,9.518072e-01,9.586020e-01,1.000000e+00,15/121,11.13%,MAP2K2;PPP1CA;RAC1;RHOA;FGFR3;TMSB4X;CFL2;PFN1;ARPC1A;ARPC5L;CFL1;MYL12B;CYFIP1;PIK3CB;ARPC2
+prerank,Dilated cardiomyopathy,0.21463892872108972,0.7388049597422833,8.721649e-01,9.643296e-01,1.000000e+00,9/31,25.94%,IGF1;TPM4;GNAS;ATP2A1;EMD;TPM1;ACTB;ITGB5;TPM3
+prerank,SNARE interactions in vesicular transport,0.2233301816886398,0.7310038645816616,8.719852e-01,9.655765e-01,1.000000e+00,11/25,35.58%,VTI1B;GOSR2;STX8;BNIP1;STX5;YKT6;VAMP4;USE1;GOSR1;SNAP29;VAMP8
+prerank,Hepatocellular carcinoma,0.16575748666151774,0.726055549546822,9.675456e-01,9.638773e-01,1.000000e+00,18/101,18.54%,MAP2K2;GSTT1;WNT11;GSTM4;RPS6KB2;CDK4;GSTM3;TP53;MGST1;POLK;PIK3CB;SMARCD2;HMOX1;BAK1;PHF10;SMARCD3;PIK3R2;TXNRD1
+prerank,Yersinia infection,0.1687870672092045,0.715456894884569,9.610136e-01,9.677226e-01,1.000000e+00,16/90,19.07%,MAP2K2;RAC1;RHOA;RPS6KA1;RHOG;ARPC1A;ARPC5L;CHUK;PIK3CB;ARPC2;RPS6KA3;ACTR3;PIK3R2;ARPC3;PKN1;MAP2K4
+prerank,Hypertrophic cardiomyopathy,-0.2052255078822628,-0.7120869284592364,8.884540e-01,9.943686e-01,1.000000e+00,9/32,19.54%,SGCD;CACNA1D;PRKAA2;TGFB1;PRKAB2;PRKAA1;ITGAV;ACE;CACNB3
+prerank,Leukocyte transendothelial migration,-0.18429496402457604,-0.7110519128888143,9.502982e-01,9.863304e-01,1.000000e+00,9/50,16.24%,PRKCA;VAV2;ARHGAP35;PTK2B;GNAI1;CTNND1;PLCG1;ROCK1;MAPK11
+prerank,NOD-like receptor signaling pathway,-0.1641568350076171,-0.7110304421824258,9.643564e-01,9.776180e-01,1.000000e+00,21/92,23.92%,ITPR1;JUN;GSDMD;PLCB1;ITPR3;BIRC3;CARD9;IRF9;TYK2;NAMPT;GABARAPL1;TRAF3;MAPK11;NEK7;BIRC2;MAP3K7;TRIP6;TAB1;TRPM7;TAB3;STAT2
+prerank,Chagas disease,-0.18057380977846293,-0.7100335916917064,9.386503e-01,9.698758e-01,1.000000e+00,9/53,16.24%,FOS;JUN;PLCB1;TGFBR1;CFLAR;GNAI1;TGFB1;PPP2CB;MAPK11
+prerank,Adipocytokine signaling pathway,-0.19071784685943852,-0.6969774754121397,9.236791e-01,9.720464e-01,1.000000e+00,6/41,14.09%,CPT1B;ACACB;PRKAA2;TRADD;PRKAB2;PRKAA1
+prerank,Fc epsilon RI signaling pathway,-0.19276150380468793,-0.6872200729264046,9.225806e-01,9.709036e-01,1.000000e+00,8/36,17.82%,PRKCA;VAV2;PLCG1;MAP2K7;SOS2;MAPK11;PDPK1;NRAS
+prerank,Ether lipid metabolism,0.2188105128170555,0.6624831330217096,9.096154e-01,1.000000e+00,1.000000e+00,5/18,23.10%,PLA2G7;UGT8;CEPT1;LPCAT1;PAFAH1B3
+prerank,PD-L1 expression and PD-1 checkpoint pathway in cancer,0.16820503620585536,0.6473603460506387,9.717742e-01,1.000000e+00,1.000000e+00,5/53,10.31%,PPP3CA;MAP2K2;RPS6KB2;CHUK;PIK3CB
+prerank,Olfactory transduction,-0.22489878234190513,-0.6410186546466896,9.293139e-01,9.877846e-01,1.000000e+00,6/16,26.62%,CALML4;NCALD;CAMK2B;CAMK2G;PRKACB;GNAL
+prerank,Vasopressin-regulated water reabsorption,-0.18592676341036665,-0.6402815700684378,9.702128e-01,9.796922e-01,1.000000e+00,8/32,23.36%,VAMP2;DYNC1LI2;AQP3;CREB3L2;RAB5A;ADCY6;PRKACB;CREB1
+prerank,Thyroid cancer,-0.18519013697880612,-0.6233532250949319,9.613153e-01,9.780534e-01,1.000000e+00,7/28,20.25%,GADD45B;GADD45G;LEF1;DDB2;NRAS;GADD45A;CDKN1A
+prerank,RNA degradation,0.15045874826967676,0.6035358426641505,1.000000e+00,1.000000e+00,1.000000e+00,22/64,31.67%,LSM3;LSM1;MPHOSPH6;LSM2;LSM4;HSPA9;EXOSC1;CNOT10;LSM7;EXOSC10;ENO3;HSPD1;EXOSC7;CNOT7;EXOSC5;CNOT6;EXOSC2;XRN2;ENO1;WDR61;PABPC4;LSM5
+prerank,Glycosylphosphatidylinositol (GPI)-anchor biosynthesis,0.18872865936711872,0.5999578899387626,9.712526e-01,1.000000e+00,1.000000e+00,9/23,37.83%,PIGC;PIGV;GPAA1;PIGP;PIGX;PIGO;PIGS;PIGW;PIGF
+prerank,Chemokine signaling pathway,0.1447334764069999,0.5967569502698162,9.980545e-01,9.983532e-01,1.000000e+00,11/76,18.86%,PARD3;RAC1;RHOA;GNG5;CHUK;PIK3CB;CXCL16;LYN;GNAI2;PIK3R2;GRK6
+prerank,Glycosaminoglycan biosynthesis,0.16997523559511196,0.5461778253294154,9.883721e-01,1.000000e+00,1.000000e+00,8/25,28.46%,B4GALT1;EXT2;B4GALT3;ST3GAL3;B4GALT2;B3GAT3;EXT1;CHPF
+prerank,Toll-like receptor signaling pathway,0.13308449610596648,0.5027574608640816,1.000000e+00,9.972877e-01,1.000000e+00,18/48,37.44%,MAP2K2;RAC1;CHUK;PIK3CB;PIK3R2;MAP2K4;MAPK9;IRAK4;FADD;MAPK13;NFKB1;TIRAP;IRAK1;AKT3;TAB2;MAPK3;AKT1;MAPK1

Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_70cr_KEGG/gseapy.prerank.140291879719632.log

@@ -0,0 +1,8 @@
+2026-05-11 07:08:14,408 prerank140291879719632::[DEBUG   ] Input data is a DataFrame with gene names
+2026-05-11 07:08:14,411 prerank140291879719632::[INFO    ] Parsing data files for GSEA.............................
+2026-05-11 07:08:14,423 prerank140291879719632::[INFO    ] Enrichr library gene sets already downloaded in: /root/.cache/gseapy, use local file
+2026-05-11 07:08:14,440 prerank140291879719632::[INFO    ] 0057 gene_sets have been filtered out when max_size=500 and min_size=15
+2026-05-11 07:08:14,440 prerank140291879719632::[INFO    ] 0263 gene_sets used for further statistical testing.....
+2026-05-11 07:08:14,440 prerank140291879719632::[INFO    ] Start to run GSEA...Might take a while..................
+2026-05-11 07:08:32,402 prerank140291879719632::[INFO    ] Congratulations. GSEApy runs successfully................
+

Biomanus/biomni_web/backend/data/biomni_sessions/75ad0e54-43de-4955-9b82-e969d13abb90/paper_reproduction_runs/user_provided_paper_reproduction_task/results/gseapy_foxj1_GO_BP/gseapy.prerank.140289161393552.log

@@ -0,0 +1,10 @@
+2026-05-11 07:14:24,999 prerank140289161393552::[DEBUG   ] Input data is a DataFrame with gene names
+2026-05-11 07:14:25,004 prerank140289161393552::[WARNING ] Duplicated values found in preranked stats: 0.92% of genes
+The order of those genes will be arbitrary, which may produce unexpected results.
+2026-05-11 07:14:25,004 prerank140289161393552::[INFO    ] Parsing data files for GSEA.............................
+2026-05-11 07:14:25,019 prerank140289161393552::[INFO    ] Enrichr library gene sets already downloaded in: /root/.cache/gseapy, use local file
+2026-05-11 07:14:25,092 prerank140289161393552::[INFO    ] 3508 gene_sets have been filtered out when max_size=500 and min_size=15
+2026-05-11 07:14:25,093 prerank140289161393552::[INFO    ] 1899 gene_sets used for further statistical testing.....
+2026-05-11 07:14:25,093 prerank140289161393552::[INFO    ] Start to run GSEA...Might take a while..................
+2026-05-11 07:15:16,325 prerank140289161393552::[INFO    ] Congratulations. GSEApy runs successfully................
+

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bamtools/Dockerfile

@@ -0,0 +1,40 @@
+
+FROM python:3.10-slim
+
+# Install system dependencies
+RUN apt-get update &&     apt-get install -y         default-jre         wget         curl     && apt-get clean     && rm -rf /var/lib/apt/lists/*
+
+# Install Miniconda
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh &&     bash /tmp/miniconda.sh -b -p /opt/conda &&     rm /tmp/miniconda.sh
+
+# Add conda to PATH
+ENV PATH="/opt/conda/bin:$PATH"
+
+# Install bamtools via conda (e.g., from bioconda)
+RUN conda install -c bioconda bamtools -y &&     conda clean -a
+
+# Install Python dependencies
+RUN pip install uv
+RUN uv pip install --system fastmcp
+
+# Create app directory
+WORKDIR /app
+
+# Copy your MCP server
+COPY bamtools_server.py /app/
+
+# Create workspace and output directories
+RUN mkdir -p /app/workspace /app/output
+
+# Make sure the server script is executable
+RUN chmod +x /app/bamtools_server.py
+
+# Expose port for MCP over HTTP (optional)
+EXPOSE 8000
+
+# Health check
+HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3     CMD python -c "import sys; sys.exit(0)"
+
+# Default command runs the MCP server via stdio
+CMD ["python", "/app/bamtools_server.py"]
+        

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bamtools/app/bamtools_server.py

@@ -0,0 +1,712 @@
+import subprocess
+import shlex
+import os
+from pathlib import Path
+from typing import List, Optional
+
+# In a real MCP environment, the 'mcp' object with its decorators
+# would be provided by the framework. This is a placeholder for standalone validation.
+class _MCP:
+    def tool(self, *args, **kwargs):
+        def decorator(f):
+            return f
+        return decorator
+mcp = _MCP()
+
+### Bamtools Tool Definitions ###
+
+from mcp.server.fastmcp import FastMCP
+
+SERVER_NAME = 'local_bamtools'
+mcp = FastMCP(SERVER_NAME)
+
+@mcp.tool()
+def convert(
+    in_bam: Path,
+    format: str,
+    out: Optional[Path] = None,
+    region: Optional[str] = None,
+) -> dict:
+    """
+    Converts a BAM file to various other formats.
+
+    Args:
+        in_bam: The input BAM file.
+        format: The output format. Must be one of: bed, fasta, fastq, json, pileup, sam, yaml.
+        out: The output filename. If not provided, output is sent to stdout.
+        region: Only convert alignments that overlap this region (e.g., "ref:start-end").
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and output files.
+    """
+    if not in_bam.is_file():
+        raise FileNotFoundError(f"Input BAM file not found: {in_bam}")
+
+    valid_formats = {"bed", "fasta", "fastq", "json", "pileup", "sam", "yaml"}
+    if format not in valid_formats:
+        raise ValueError(f"Invalid format '{format}'. Must be one of {valid_formats}")
+
+    cmd = ["bamtools", "convert", "-in", str(in_bam), "-format", format]
+    output_files = []
+
+    if out:
+        cmd.extend(["-out", str(out)])
+        output_files.append(str(out))
+    if region:
+        cmd.extend(["-region", region])
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": output_files,
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools convert failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def count(in_bams: List[Path]) -> dict:
+    """
+    Prints the number of alignments in one or more BAM files.
+
+    Args:
+        in_bams: A list of input BAM files.
+    
+    Returns:
+        A dictionary containing the command executed, stdout (the count), and stderr.
+    """
+    if not in_bams:
+        raise ValueError("At least one input BAM file must be provided.")
+
+    cmd = ["bamtools", "count"]
+    for bam_file in in_bams:
+        if not bam_file.is_file():
+            raise FileNotFoundError(f"Input BAM file not found: {bam_file}")
+        cmd.extend(["-in", str(bam_file)])
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": [],
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools count failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def coverage(in_bams: List[Path]) -> dict:
+    """
+    Prints coverage statistics from one or more BAM files.
+
+    Args:
+        in_bams: A list of input BAM files.
+    
+    Returns:
+        A dictionary containing the command executed, stdout (coverage stats), and stderr.
+    """
+    if not in_bams:
+        raise ValueError("At least one input BAM file must be provided.")
+
+    cmd = ["bamtools", "coverage"]
+    for bam_file in in_bams:
+        if not bam_file.is_file():
+            raise FileNotFoundError(f"Input BAM file not found: {bam_file}")
+        cmd.extend(["-in", str(bam_file)])
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": [],
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools coverage failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def filter_bam(
+    in_bams: List[Path],
+    out_bam: Optional[Path] = None,
+    region: Optional[str] = None,
+    property_filters: Optional[List[str]] = None,
+    tag_filters: Optional[List[str]] = None,
+    script: Optional[Path] = None,
+    list_file: Optional[Path] = None,
+    force_compression: bool = False,
+) -> dict:
+    """
+    Filters BAM file(s) by user-specified criteria.
+
+    Args:
+        in_bams: The input BAM file(s).
+        out_bam: The output BAM file. If not provided, output is sent to stdout.
+        region: Only keeps alignments that overlap this region.
+        property_filters: List of "TAG:VALUE" strings to filter by BamAlignment property.
+        tag_filters: List of "TAG:VALUE" strings to filter by BamAlignment tag.
+        script: A file containing a list of filter rules.
+        list_file: A file containing a list of read names to be kept.
+        force_compression: If True, the output BAM file will be compressed.
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and output files.
+    """
+    if not in_bams:
+        raise ValueError("At least one input BAM file must be provided.")
+
+    cmd = ["bamtools", "filter"]
+    output_files = []
+
+    for bam_file in in_bams:
+        if not bam_file.is_file():
+            raise FileNotFoundError(f"Input BAM file not found: {bam_file}")
+        cmd.extend(["-in", str(bam_file)])
+
+    if out_bam:
+        cmd.extend(["-out", str(out_bam)])
+        output_files.append(str(out_bam))
+    if region:
+        cmd.extend(["-region", region])
+    if property_filters:
+        for p_filter in property_filters:
+            cmd.extend(["-property", p_filter])
+    if tag_filters:
+        for t_filter in tag_filters:
+            cmd.extend(["-tag", t_filter])
+    if script:
+        if not script.is_file():
+            raise FileNotFoundError(f"Script file not found: {script}")
+        cmd.extend(["-script", str(script)])
+    if list_file:
+        if not list_file.is_file():
+            raise FileNotFoundError(f"List file not found: {list_file}")
+        cmd.extend(["-list", str(list_file)])
+    if force_compression:
+        cmd.append("-forceCompression")
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": output_files,
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools filter failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def header(in_bam: Path) -> dict:
+    """
+    Prints the header from a BAM file.
+
+    Args:
+        in_bam: The input BAM file.
+    
+    Returns:
+        A dictionary containing the command executed, stdout (the header), and stderr.
+    """
+    if not in_bam.is_file():
+        raise FileNotFoundError(f"Input BAM file not found: {in_bam}")
+
+    cmd = ["bamtools", "header", "-in", str(in_bam)]
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": [],
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools header failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def index(in_bam: Path) -> dict:
+    """
+    Generates an index for a BAM file. The index file (.bai) is created in the same directory.
+
+    Args:
+        in_bam: The input BAM file to index.
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and the path to the generated index file.
+    """
+    if not in_bam.is_file():
+        raise FileNotFoundError(f"Input BAM file not found: {in_bam}")
+
+    cmd = ["bamtools", "index", "-in", str(in_bam)]
+    output_index_file = in_bam.with_suffix(in_bam.suffix + '.bai')
+    
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        if not output_index_file.is_file():
+             raise FileNotFoundError(f"Expected index file was not created: {output_index_file}")
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": [str(output_index_file)],
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools index failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def merge(
+    in_bams: List[Path],
+    out_bam: Optional[Path] = None,
+    region: Optional[str] = None,
+    force: bool = False,
+) -> dict:
+    """
+    Merges multiple BAM files into a single file.
+
+    Args:
+        in_bams: A list of input BAM files to merge. Must contain at least two files.
+        out_bam: The output BAM file. If not provided, output is sent to stdout.
+        region: Merges only alignments that overlap this region.
+        force: Forces merge, even if headers are not identical. Uses the first BAM file's header.
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and output files.
+    """
+    if len(in_bams) < 2:
+        raise ValueError("At least two input BAM files must be provided for merging.")
+
+    cmd = ["bamtools", "merge"]
+    output_files = []
+
+    for bam_file in in_bams:
+        if not bam_file.is_file():
+            raise FileNotFoundError(f"Input BAM file not found: {bam_file}")
+        cmd.extend(["-in", str(bam_file)])
+
+    if out_bam:
+        cmd.extend(["-out", str(out_bam)])
+        output_files.append(str(out_bam))
+    if region:
+        cmd.extend(["-region", region])
+    if force:
+        cmd.append("-force")
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": output_files,
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools merge failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def random(
+    in_bams: List[Path],
+    out_bam: Optional[Path] = None,
+    n: int = 100,
+    seed: int = 0,
+) -> dict:
+    """
+    Selects a random number of alignments from existing BAM file(s).
+
+    Args:
+        in_bams: The input BAM file(s).
+        out_bam: The output BAM file. If not provided, output is sent to stdout.
+        n: Number of alignments to select.
+        seed: Random seed.
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and output files.
+    """
+    if not in_bams:
+        raise ValueError("At least one input BAM file must be provided.")
+
+    cmd = ["bamtools", "random", "-n", str(n), "-seed", str(seed)]
+    output_files = []
+
+    for bam_file in in_bams:
+        if not bam_file.is_file():
+            raise FileNotFoundError(f"Input BAM file not found: {bam_file}")
+        cmd.extend(["-in", str(bam_file)])
+
+    if out_bam:
+        cmd.extend(["-out", str(out_bam)])
+        output_files.append(str(out_bam))
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": output_files,
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools random failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def resolve(in_bam: Path, out_bam: Path) -> dict:
+    """
+    Resolves paired-end reads, marking the IsProperPair flag as needed.
+
+    Args:
+        in_bam: The input BAM file.
+        out_bam: The output BAM file.
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and the output file path.
+    """
+    if not in_bam.is_file():
+        raise FileNotFoundError(f"Input BAM file not found: {in_bam}")
+
+    cmd = ["bamtools", "resolve", "-in", str(in_bam), "-out", str(out_bam)]
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": [str(out_bam)],
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools resolve failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def revert(in_bam: Path, out_bam: Path) -> dict:
+    """
+    Removes duplicate marks and restores original base qualities from a BAM file.
+
+    Args:
+        in_bam: The input BAM file.
+        out_bam: The output BAM file.
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and the output file path.
+    """
+    if not in_bam.is_file():
+        raise FileNotFoundError(f"Input BAM file not found: {in_bam}")
+
+    cmd = ["bamtools", "revert", "-in", str(in_bam), "-out", str(out_bam)]
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": [str(out_bam)],
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools revert failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def sort(
+    in_bam: Path,
+    out_bam: Optional[Path] = None,
+    by: str = "position",
+    order: str = "ascending",
+    n: int = 1000,
+    mem: int = 512,
+) -> dict:
+    """
+    Sorts a BAM file by position or name.
+
+    Args:
+        in_bam: The input BAM file.
+        out_bam: The output BAM file. If not provided, output is sent to stdout.
+        by: Sort by 'position' or 'name'.
+        order: Sort in 'ascending' or 'descending' order.
+        n: Max number of alignments to buffer in memory.
+        mem: Max memory to use (in megabytes).
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and output files.
+    """
+    if not in_bam.is_file():
+        raise FileNotFoundError(f"Input BAM file not found: {in_bam}")
+    if by not in ["position", "name"]:
+        raise ValueError("Sort 'by' must be 'position' or 'name'.")
+    if order not in ["ascending", "descending"]:
+        raise ValueError("Sort 'order' must be 'ascending' or 'descending'.")
+
+    cmd = ["bamtools", "sort", "-in", str(in_bam), "-by", by, "-order", order, "-n", str(n), "-mem", str(mem)]
+    output_files = []
+
+    if out_bam:
+        cmd.extend(["-out", str(out_bam)])
+        output_files.append(str(out_bam))
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": output_files,
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools sort failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def split(
+    in_bam: Path,
+    output_dir: Path,
+    stub: Optional[str] = None,
+    by: Optional[str] = None,
+    reference: bool = False,
+    mapped: bool = False,
+    paired: bool = False,
+    tag: Optional[str] = None,
+) -> dict:
+    """
+    Splits a BAM file based on a specified property, creating multiple output BAM files.
+
+    Args:
+        in_bam: The input BAM file.
+        output_dir: The directory where output files will be created.
+        stub: The prefix for output file names. Defaults to the input file name.
+        by: Split file by a specific property.
+        reference: Split by reference sequence.
+        mapped: Split into mapped and unmapped files.
+        paired: Split into paired and single-end files.
+        tag: Split by the value of a specific tag.
+    
+    Returns:
+        A dictionary containing the command executed, stdout, stderr, and a list of created files.
+    """
+    if not in_bam.is_file():
+        raise FileNotFoundError(f"Input BAM file not found: {in_bam}")
+
+    split_options = [by is not None, reference, mapped, paired, tag is not None]
+    if sum(split_options) != 1:
+        raise ValueError("Exactly one split criterion (by, reference, mapped, paired, or tag) must be specified.")
+
+    output_dir.mkdir(parents=True, exist_ok=True)
+
+    cmd = ["bamtools", "split", "-in", str(in_bam)]
+    
+    # Use the stub to direct output to the specified directory
+    output_stub = stub if stub else in_bam.stem
+    cmd.extend(["-stub", str(output_dir / output_stub)])
+
+    if by:
+        cmd.extend(["-by", by])
+    if reference:
+        cmd.append("-reference")
+    if mapped:
+        cmd.append("-mapped")
+    if paired:
+        cmd.append("-paired")
+    if tag:
+        cmd.extend(["-tag", tag])
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        # Find all files created in the output directory
+        created_files = [str(p) for p in output_dir.glob(f"{output_stub}*")]
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": created_files,
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools split failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+@mcp.tool()
+def stats(in_bams: List[Path], insert: bool = False) -> dict:
+    """
+    Prints basic statistics from one or more BAM files.
+
+    Args:
+        in_bams: A list of input BAM files.
+        insert: If True, print insert size summary.
+    
+    Returns:
+        A dictionary containing the command executed, stdout (the stats), and stderr.
+    """
+    if not in_bams:
+        raise ValueError("At least one input BAM file must be provided.")
+
+    cmd = ["bamtools", "stats"]
+    for bam_file in in_bams:
+        if not bam_file.is_file():
+            raise FileNotFoundError(f"Input BAM file not found: {bam_file}")
+        cmd.extend(["-in", str(bam_file)])
+
+    if insert:
+        cmd.append("-insert")
+
+    command_executed = shlex.join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": [],
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"bamtools stats failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bamtools/app/bamtools_shim_server.py

@@ -0,0 +1,55 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import ast
+from pathlib import Path
+
+from mcp.server.fastmcp import FastMCP
+
+
+SOURCE_SERVER = Path('/225040511/project/BioScientist/agent_system/toolbase/mcp_batch_from_help_txt/mcp_bamtools/app/bamtools_server.py')
+LOCAL_SERVER = Path(__file__).with_name(SOURCE_SERVER.name)
+SERVER_NAME = 'biosci_bamtools'
+
+
+class _ShimMCP:
+    @staticmethod
+    def tool(*args, **kwargs):
+        if args and callable(args[0]) and len(args) == 1 and not kwargs:
+            return args[0]
+        def _decorator(fn):
+            return fn
+        return _decorator
+
+
+def _resolve_source_server():
+    if LOCAL_SERVER.exists() and LOCAL_SERVER.name != Path(__file__).name:
+        return LOCAL_SERVER
+    return SOURCE_SERVER
+
+
+def _load_functions():
+    source_server = _resolve_source_server()
+    code = source_server.read_text(encoding="utf-8")
+    tree = ast.parse(code, filename=str(source_server))
+    function_names = [n.name for n in tree.body if isinstance(n, ast.FunctionDef) and not n.name.startswith("_")]
+    namespace = {
+        "__name__": "__mcp_source__",
+        "mcp": _ShimMCP(),
+    }
+    exec(compile(code, str(source_server), "exec"), namespace, namespace)
+    loaded = []
+    for name in function_names:
+        fn = namespace.get(name)
+        if callable(fn):
+            loaded.append(fn)
+    return loaded
+
+
+mcp = FastMCP(SERVER_NAME)
+for _fn in _load_functions():
+    mcp.tool()(_fn)
+
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bamtools/docker-compose.yml

@@ -0,0 +1,22 @@
+version: '3.8'
+
+services:
+  mcp-bamtools:
+    build: .
+    image: mcp-bamtools:latest
+    container_name: mcp-bamtools
+    ports:
+      - "8000:8000"
+    environment:
+      - MCP_SERVER_NAME=bamtools
+    volumes:
+      - ./workspace:/app/workspace
+      - ./output:/app/output
+    restart: unless-stopped
+    healthcheck:
+      test: ["CMD", "python", "-c", "import sys; sys.exit(0)"]
+      interval: 30s
+      timeout: 10s
+      retries: 3
+      start_period: 5s
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bamtools/environment.yaml

@@ -0,0 +1,10 @@
+
+name: mcp-tool
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - bamtools
+  - python=3.10
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bamtools/requirements.txt

@@ -0,0 +1,2 @@
+fastmcp
+mcp

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bcftools/Dockerfile

@@ -0,0 +1,40 @@
+
+FROM python:3.10-slim
+
+# Install system dependencies
+RUN apt-get update &&     apt-get install -y         default-jre         wget         curl     && apt-get clean     && rm -rf /var/lib/apt/lists/*
+
+# Install Miniconda
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh &&     bash /tmp/miniconda.sh -b -p /opt/conda &&     rm /tmp/miniconda.sh
+
+# Add conda to PATH
+ENV PATH="/opt/conda/bin:$PATH"
+
+# Install bcftools via conda (e.g., from bioconda)
+RUN conda install -c bioconda bcftools -y &&     conda clean -a
+
+# Install Python dependencies
+RUN pip install uv
+RUN uv pip install --system fastmcp
+
+# Create app directory
+WORKDIR /app
+
+# Copy your MCP server
+COPY bcftools_server.py /app/
+
+# Create workspace and output directories
+RUN mkdir -p /app/workspace /app/output
+
+# Make sure the server script is executable
+RUN chmod +x /app/bcftools_server.py
+
+# Expose port for MCP over HTTP (optional)
+EXPOSE 8000
+
+# Health check
+HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3     CMD python -c "import sys; sys.exit(0)"
+
+# Default command runs the MCP server via stdio
+CMD ["python", "/app/bcftools_server.py"]
+        

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bcftools/app/bcftools_server.py

@@ -0,0 +1,866 @@
+import subprocess
+import tempfile
+from pathlib import Path
+from typing import List, Optional
+
+# Note: The @mcp.tool decorator is not defined here.
+# It is assumed to be provided by the Model Context Protocol (MCP) framework.
+# This code is designed to be used within that framework.
+
+# Helper function to handle subprocess execution and error reporting
+def _run_bcftools_command(cmd: List[str], output_file: Optional[Path] = None):
+    """
+    A helper function to execute a bcftools command, handle errors,
+    and return a structured dictionary.
+    """
+    command_str = " ".join(cmd)
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        output_files = [str(output_file)] if output_file and output_file.exists() else []
+        
+        # For commands that create index files automatically
+        if output_file and str(output_file).endswith((".bcf", ".vcf.gz")):
+            index_extensions = [".csi", ".tbi"]
+            for ext in index_extensions:
+                index_file = Path(str(output_file) + ext)
+                if index_file.exists():
+                    output_files.append(str(index_file))
+
+        return {
+            "command_executed": command_str,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": output_files,
+            "return_code": 0,
+        }
+    except FileNotFoundError:
+        return {
+            "command_executed": command_str,
+            "stdout": "",
+            "stderr": "Error: 'bcftools' command not found. Please ensure it is in your PATH.",
+            "output_files": [],
+            "return_code": 1,
+            "error": "FileNotFoundError"
+        }
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": command_str,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "output_files": [],
+            "return_code": e.returncode,
+            "error": "CalledProcessError"
+        }
+
+from mcp.server.fastmcp import FastMCP
+
+SERVER_NAME = 'local_bcftools'
+mcp = FastMCP(SERVER_NAME)
+
+@mcp.tool()
+def bcftools_annotate(
+    input_file: Path,
+    annotations: Optional[Path] = None,
+    columns: Optional[str] = None,
+    header_lines: Optional[Path] = None,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    remove: Optional[str] = None,
+    set_id: Optional[str] = None,
+    regions: Optional[str] = None,
+    regions_file: Optional[Path] = None,
+    targets: Optional[str] = None,
+    targets_file: Optional[Path] = None,
+    include: Optional[str] = None,
+    exclude: Optional[str] = None,
+    samples: Optional[str] = None,
+    samples_file: Optional[Path] = None,
+    threads: int = 1,
+    rename_chrs: Optional[Path] = None,
+    no_version: bool = False,
+    single_overlaps: bool = False,
+    mark_sites: Optional[str] = None,
+):
+    """
+    Annotate VCF/BCF files with information from other files.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if annotations and not annotations.exists():
+        raise FileNotFoundError(f"Annotations file not found: {annotations}")
+    if header_lines and not header_lines.exists():
+        raise FileNotFoundError(f"Header lines file not found: {header_lines}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+
+    cmd = ["bcftools", "annotate", str(input_file)]
+
+    if annotations:
+        cmd.extend(["-a", str(annotations)])
+    if columns:
+        cmd.extend(["-c", columns])
+    if header_lines:
+        cmd.extend(["-h", str(header_lines)])
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if remove:
+        cmd.extend(["-x", remove])
+    if set_id:
+        cmd.extend(["--set-id", set_id])
+    if regions:
+        cmd.extend(["-r", regions])
+    if regions_file:
+        cmd.extend(["-R", str(regions_file)])
+    if targets:
+        cmd.extend(["-t", targets])
+    if targets_file:
+        cmd.extend(["-T", str(targets_file)])
+    if include:
+        cmd.extend(["-i", include])
+    if exclude:
+        cmd.extend(["-e", exclude])
+    if samples:
+        cmd.extend(["-s", samples])
+    if samples_file:
+        cmd.extend(["-S", str(samples_file)])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+    if rename_chrs:
+        cmd.extend(["--rename-chrs", str(rename_chrs)])
+    if no_version:
+        cmd.append("--no-version")
+    if single_overlaps:
+        cmd.append("--single-overlaps")
+    if mark_sites:
+        cmd.extend(["--mark-sites", mark_sites])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_call(
+    input_file: Path,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    ploidy: Optional[str] = None,
+    ploidy_file: Optional[Path] = None,
+    call_method: str = "multiallelic",
+    constrain_alleles: bool = False,
+    group_samples: Optional[str] = None,
+    samples: Optional[str] = None,
+    samples_file: Optional[Path] = None,
+    format_fields: Optional[str] = None,
+    keep_alts: bool = False,
+    keep_masked_ref: bool = False,
+    skip_variants: bool = False,
+    threads: int = 1,
+):
+    """
+    Call genotypes from likelihoods.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+    if call_method not in ["consensus", "multiallelic"]:
+        raise ValueError("call_method must be 'consensus' or 'multiallelic'.")
+
+    cmd = ["bcftools", "call", str(input_file)]
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if ploidy:
+        cmd.extend(["-p", ploidy])
+    if ploidy_file:
+        cmd.extend(["-P", str(ploidy_file)])
+    if call_method == "consensus":
+        cmd.append("-c")
+    else: # multiallelic is default, but -m is explicit
+        cmd.append("-m")
+    if constrain_alleles:
+        cmd.append("-C alleles")
+    if group_samples:
+        cmd.extend(["-G", group_samples])
+    if samples:
+        cmd.extend(["-s", samples])
+    if samples_file:
+        cmd.extend(["-S", str(samples_file)])
+    if format_fields:
+        cmd.extend(["-f", format_fields])
+    if keep_alts:
+        cmd.append("-A")
+    if keep_masked_ref:
+        cmd.append("-M")
+    if skip_variants:
+        cmd.append("-V")
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_concat(
+    input_files: List[Path],
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    allow_overlaps: bool = False,
+    remove_duplicates: bool = False,
+    naive: bool = False,
+    threads: int = 1,
+):
+    """
+    Concatenate VCF/BCF files from non-overlapping regions.
+    """
+    if not input_files:
+        raise ValueError("At least one input file must be provided.")
+    for f in input_files:
+        if not f.exists():
+            raise FileNotFoundError(f"Input file not found: {f}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+
+    cmd = ["bcftools", "concat"]
+
+    if allow_overlaps:
+        cmd.append("-a")
+    if remove_duplicates:
+        cmd.append("-d")
+    if naive:
+        cmd.append("-n")
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    cmd.extend([str(f) for f in input_files])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_consensus(
+    input_file: Path,
+    fasta_ref: Path,
+    output: Optional[Path] = None,
+    chain: Optional[Path] = None,
+    haplotype: Optional[str] = None,
+    iupac_codes: bool = False,
+    mark_del: Optional[str] = None,
+    mark_ins: Optional[str] = None,
+    mark_snv: Optional[str] = None,
+    missing: Optional[str] = None,
+    sample: Optional[str] = None,
+    include: Optional[str] = None,
+    exclude: Optional[str] = None,
+):
+    """
+    Create a consensus sequence by applying VCF variants to a reference FASTA file.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input VCF/BCF file not found: {input_file}")
+    if not fasta_ref.exists():
+        raise FileNotFoundError(f"Reference FASTA file not found: {fasta_ref}")
+    if haplotype and haplotype not in ["1", "2", "R", "A", "IUPAC", "all"]:
+        raise ValueError("haplotype must be one of '1', '2', 'R', 'A', 'IUPAC', 'all'.")
+
+    cmd = ["bcftools", "consensus", str(input_file)]
+    cmd.extend(["-f", str(fasta_ref)])
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if chain:
+        cmd.extend(["-c", str(chain)])
+    if haplotype:
+        cmd.extend(["-H", haplotype])
+    if iupac_codes:
+        cmd.append("-i")
+    if mark_del:
+        cmd.extend(["--mark-del", mark_del])
+    if mark_ins:
+        cmd.extend(["--mark-ins", mark_ins])
+    if mark_snv:
+        cmd.extend(["--mark-snv", mark_snv])
+    if missing:
+        cmd.extend(["-m", missing])
+    if sample:
+        cmd.extend(["-s", sample])
+    if include:
+        cmd.extend(["--include", include])
+    if exclude:
+        cmd.extend(["--exclude", exclude])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_filter(
+    input_file: Path,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    include: Optional[str] = None,
+    exclude: Optional[str] = None,
+    soft_filter: Optional[str] = None,
+    set_gt: Optional[str] = None,
+    mode: str = "+",
+    threads: int = 1,
+):
+    """
+    Apply filters to VCF/BCF files.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+    if mode not in ["+", "x", "X"]:
+        raise ValueError("mode must be one of '+', 'x', 'X'.")
+
+    cmd = ["bcftools", "filter", str(input_file)]
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if include:
+        cmd.extend(["-i", include])
+    if exclude:
+        cmd.extend(["-e", exclude])
+    if soft_filter:
+        cmd.extend(["-s", soft_filter])
+    if set_gt:
+        cmd.extend(["-S", set_gt])
+    if mode != "+":
+        cmd.extend(["-m", mode])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_index(
+    input_file: Path,
+    force: bool = False,
+    stats: bool = False,
+    threads: int = 1,
+    csi: bool = False,
+    tbi: bool = False,
+    min_csi_shift: int = 14,
+):
+    """
+    Index VCF/BCF files for fast random access.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if csi and tbi:
+        raise ValueError("Cannot specify both --csi (-c) and --tbi (-t).")
+
+    cmd = ["bcftools", "index"]
+
+    if force:
+        cmd.append("-f")
+    if stats:
+        cmd.append("-n")
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+    if csi:
+        cmd.append("-c")
+    if tbi:
+        cmd.append("-t")
+    if csi and min_csi_shift != 14:
+        cmd.extend(["-m", str(min_csi_shift)])
+
+    cmd.append(str(input_file))
+    
+    # The output file is the index file itself
+    output_idx_file = None
+    if csi:
+        output_idx_file = Path(str(input_file) + ".csi")
+    else: # default is tbi for vcf.gz, csi for bcf
+        if str(input_file).endswith(".bcf"):
+            output_idx_file = Path(str(input_file) + ".csi")
+        else:
+            output_idx_file = Path(str(input_file) + ".tbi")
+
+    return _run_bcftools_command(cmd, output_idx_file)
+
+@mcp.tool()
+def bcftools_isec(
+    input_files: List[Path],
+    output_dir: Path,
+    output_type: str = "v",
+    complement: bool = False,
+    collapse: Optional[str] = None,
+    exclude: Optional[str] = None,
+    include: Optional[str] = None,
+    n_sites: Optional[str] = None,
+    regions: Optional[str] = None,
+    regions_file: Optional[Path] = None,
+    targets: Optional[str] = None,
+    targets_file: Optional[Path] = None,
+    threads: int = 1,
+):
+    """
+    Create intersections, unions, and complements of VCF/BCF files.
+    """
+    if len(input_files) < 2:
+        raise ValueError("At least two input files must be provided for isec.")
+    for f in input_files:
+        if not f.exists():
+            raise FileNotFoundError(f"Input file not found: {f}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+    if collapse and collapse not in ["none", "all", "snps", "indels", "both", "any"]:
+        raise ValueError("Invalid value for collapse.")
+
+    output_dir.mkdir(parents=True, exist_ok=True)
+
+    cmd = ["bcftools", "isec"]
+    cmd.extend(["-p", str(output_dir)])
+    cmd.extend(["-O", output_type])
+
+    if complement:
+        cmd.append("-c")
+    if collapse:
+        cmd.extend(["--collapse", collapse])
+    if exclude:
+        cmd.extend(["-e", exclude])
+    if include:
+        cmd.extend(["-i", include])
+    if n_sites:
+        cmd.extend(["-n", n_sites])
+    if regions:
+        cmd.extend(["-r", regions])
+    if regions_file:
+        cmd.extend(["-R", str(regions_file)])
+    if targets:
+        cmd.extend(["-t", targets])
+    if targets_file:
+        cmd.extend(["-T", str(targets_file)])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    cmd.extend([str(f) for f in input_files])
+
+    # isec doesn't have a single output file, it creates a directory
+    # We will return the directory path in a structured way if needed,
+    # but for now, we'll rely on the user knowing the output is a directory.
+    # The _run_bcftools_command helper won't find a single output file.
+    result = _run_bcftools_command(cmd)
+    
+    # Manually list created files
+    if result["return_code"] == 0:
+        created_files = [str(p) for p in output_dir.glob('*')]
+        result["output_files"] = created_files
+
+    return result
+
+@mcp.tool()
+def bcftools_merge(
+    input_files: List[Path],
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    info_rules: Optional[str] = None,
+    merge_logic: Optional[str] = None,
+    threads: int = 1,
+):
+    """
+    Merge multiple VCF/BCF files from different samples into a single file.
+    """
+    if not input_files:
+        raise ValueError("At least one input file must be provided.")
+    for f in input_files:
+        if not f.exists():
+            raise FileNotFoundError(f"Input file not found: {f}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+
+    cmd = ["bcftools", "merge"]
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if info_rules:
+        cmd.extend(["--info-rules", info_rules])
+    if merge_logic:
+        cmd.extend(["-m", merge_logic])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    cmd.extend([str(f) for f in input_files])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_mpileup(
+    input_bams: List[Path],
+    fasta_ref: Path,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    regions: Optional[str] = None,
+    regions_file: Optional[Path] = None,
+    annotate: Optional[str] = None,
+    max_depth: int = 250,
+    min_base_quality: int = 13,
+    min_mapping_quality: int = 0,
+    adjust_mq: int = 50,
+    no_baq: bool = False,
+    threads: int = 1,
+):
+    """
+    Generate VCF/BCF from alignment files (BAM/CRAM).
+    """
+    if not input_bams:
+        raise ValueError("At least one input BAM/CRAM file must be provided.")
+    for f in input_bams:
+        if not f.exists():
+            raise FileNotFoundError(f"Input alignment file not found: {f}")
+    if not fasta_ref.exists():
+        raise FileNotFoundError(f"Reference FASTA file not found: {fasta_ref}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+
+    cmd = ["bcftools", "mpileup"]
+    cmd.extend(["-f", str(fasta_ref)])
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if regions:
+        cmd.extend(["-r", regions])
+    if regions_file:
+        cmd.extend(["-R", str(regions_file)])
+    if annotate:
+        cmd.extend(["-a", annotate])
+    if max_depth != 250:
+        cmd.extend(["-d", str(max_depth)])
+    if min_base_quality != 13:
+        cmd.extend(["-q", str(min_base_quality)])
+    if min_mapping_quality != 0:
+        cmd.extend(["-Q", str(min_mapping_quality)])
+    if adjust_mq != 50:
+        cmd.extend(["-C", str(adjust_mq)])
+    if no_baq:
+        cmd.append("-B")
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    cmd.extend([str(f) for f in input_bams])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_norm(
+    input_file: Path,
+    fasta_ref: Path,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    check_ref: str = "w",
+    multiallelics: Optional[str] = None,
+    atomize: bool = False,
+    rm_dup: Optional[str] = None,
+    threads: int = 1,
+):
+    """
+    Left-align and normalize indels, check REF, split multiallelic sites.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if not fasta_ref.exists():
+        raise FileNotFoundError(f"Reference FASTA file not found: {fasta_ref}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+    if check_ref not in ["w", "e", "x", "s"]:
+        raise ValueError("check_ref must be one of 'w', 'e', 'x', 's'.")
+
+    cmd = ["bcftools", "norm", str(input_file)]
+    cmd.extend(["-f", str(fasta_ref)])
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if check_ref != "w":
+        cmd.extend(["-c", check_ref])
+    if multiallelics:
+        cmd.extend(["-m", multiallelics])
+    if atomize:
+        cmd.append("-a")
+    if rm_dup:
+        cmd.extend(["-d", rm_dup])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_query(
+    input_file: Path,
+    format_string: str,
+    output: Optional[Path] = None,
+    include: Optional[str] = None,
+    exclude: Optional[str] = None,
+    regions: Optional[str] = None,
+    regions_file: Optional[Path] = None,
+    samples: Optional[str] = None,
+    samples_file: Optional[Path] = None,
+    list_samples: bool = False,
+):
+    """
+    Extracts fields from VCF/BCF files and prints them in a user-defined format.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+
+    cmd = ["bcftools", "query", str(input_file)]
+
+    if list_samples:
+        cmd.append("-l")
+    else:
+        cmd.extend(["-f", format_string])
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if include:
+        cmd.extend(["-i", include])
+    if exclude:
+        cmd.extend(["-e", exclude])
+    if regions:
+        cmd.extend(["-r", regions])
+    if regions_file:
+        cmd.extend(["-R", str(regions_file)])
+    if samples:
+        cmd.extend(["-s", samples])
+    if samples_file:
+        cmd.extend(["-S", str(samples_file)])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_reheader(
+    input_file: Path,
+    header: Optional[Path] = None,
+    samples: Optional[Path] = None,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+):
+    """
+    Modify VCF/BCF header, e.g., rename samples.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if header and not header.exists():
+        raise FileNotFoundError(f"Header file not found: {header}")
+    if samples and not samples.exists():
+        raise FileNotFoundError(f"Samples file not found: {samples}")
+    if not header and not samples:
+        raise ValueError("Either 'header' or 'samples' file must be provided.")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+
+    cmd = ["bcftools", "reheader"]
+
+    if header:
+        cmd.extend(["-h", str(header)])
+    if samples:
+        cmd.extend(["-s", str(samples)])
+    if output:
+        cmd.extend(["-o", str(output)])
+    
+    cmd.append(str(input_file))
+
+    # Reheader does not support -O, output type is inferred from extension
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_sort(
+    input_file: Path,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    max_mem: str = "768M",
+    temp_dir: Optional[Path] = None,
+):
+    """
+    Sort VCF/BCF file by chromosome and position.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+
+    cmd = ["bcftools", "sort", str(input_file)]
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if max_mem:
+        cmd.extend(["-m", max_mem])
+    if temp_dir:
+        temp_dir.mkdir(exist_ok=True, parents=True)
+        cmd.extend(["-T", str(temp_dir)])
+
+    return _run_bcftools_command(cmd, output)
+
+@mcp.tool()
+def bcftools_stats(
+    input_files: List[Path],
+    fasta_ref: Optional[Path] = None,
+    output_dir: Optional[Path] = None,
+    regions: Optional[str] = None,
+    regions_file: Optional[Path] = None,
+    samples: Optional[str] = None,
+    samples_file: Optional[Path] = None,
+    threads: int = 1,
+):
+    """
+    Produce VCF/BCF stats, create plots with plot-vcfstats.
+    """
+    if not input_files:
+        raise ValueError("At least one input file must be provided.")
+    for f in input_files:
+        if not f.exists():
+            raise FileNotFoundError(f"Input file not found: {f}")
+    if fasta_ref and not fasta_ref.exists():
+        raise FileNotFoundError(f"Reference FASTA file not found: {fasta_ref}")
+
+    cmd = ["bcftools", "stats"]
+
+    if fasta_ref:
+        cmd.extend(["-f", str(fasta_ref)])
+    if regions:
+        cmd.extend(["-r", regions])
+    if regions_file:
+        cmd.extend(["-R", str(regions_file)])
+    if samples:
+        cmd.extend(["-s", samples])
+    if samples_file:
+        cmd.extend(["-S", str(samples_file)])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    cmd.extend([str(f) for f in input_files])
+
+    # stats command outputs to stdout by default.
+    # If output_dir is provided, we redirect stdout to a file.
+    output_file = None
+    if output_dir:
+        output_dir.mkdir(exist_ok=True, parents=True)
+        output_file = output_dir / "stats.txt"
+        with open(output_file, "w") as f_out:
+            command_str = " ".join(cmd)
+            try:
+                result = subprocess.run(
+                    cmd,
+                    stdout=f_out,
+                    stderr=subprocess.PIPE,
+                    text=True,
+                    check=True,
+                )
+                return {
+                    "command_executed": command_str,
+                    "stdout": f"Stats written to {output_file}",
+                    "stderr": result.stderr,
+                    "output_files": [str(output_file)],
+                    "return_code": 0,
+                }
+            except subprocess.CalledProcessError as e:
+                return {
+                    "command_executed": command_str,
+                    "stdout": e.stdout or "",
+                    "stderr": e.stderr,
+                    "output_files": [],
+                    "return_code": e.returncode,
+                    "error": "CalledProcessError"
+                }
+    else:
+        # No output file, capture stdout directly
+        return _run_bcftools_command(cmd)
+
+@mcp.tool()
+def bcftools_view(
+    input_file: Path,
+    output: Optional[Path] = None,
+    output_type: str = "v",
+    header_only: bool = False,
+    no_header: bool = False,
+    drop_genotypes: bool = False,
+    trim_alt_alleles: bool = False,
+    min_alleles: Optional[int] = None,
+    max_alleles: Optional[int] = None,
+    min_ac: Optional[int] = None,
+    max_ac: Optional[int] = None,
+    min_af: Optional[float] = None,
+    max_af: Optional[float] = None,
+    types: Optional[str] = None,
+    include: Optional[str] = None,
+    exclude: Optional[str] = None,
+    regions: Optional[str] = None,
+    regions_file: Optional[Path] = None,
+    samples: Optional[str] = None,
+    samples_file: Optional[Path] = None,
+    threads: int = 1,
+):
+    """
+    Subset, filter, and convert VCF and BCF files.
+    """
+    if not input_file.exists():
+        raise FileNotFoundError(f"Input file not found: {input_file}")
+    if output_type not in ["b", "u", "z", "v"]:
+        raise ValueError("output_type must be one of 'b', 'u', 'z', 'v'.")
+
+    cmd = ["bcftools", "view", str(input_file)]
+
+    if output:
+        cmd.extend(["-o", str(output)])
+    if output_type:
+        cmd.extend(["-O", output_type])
+    if header_only:
+        cmd.append("-h")
+    if no_header:
+        cmd.append("-H")
+    if drop_genotypes:
+        cmd.append("-G")
+    if trim_alt_alleles:
+        cmd.append("-a")
+    if min_alleles is not None:
+        cmd.extend(["-m", str(min_alleles)])
+    if max_alleles is not None:
+        cmd.extend(["-M", str(max_alleles)])
+    if min_ac is not None:
+        cmd.extend(["-c", str(min_ac)])
+    if max_ac is not None:
+        cmd.extend(["-C", str(max_ac)])
+    if min_af is not None:
+        cmd.extend(["-q", str(min_af)])
+    if max_af is not None:
+        cmd.extend(["-Q", str(max_af)])
+    if types:
+        cmd.extend(["-v", types])
+    if include:
+        cmd.extend(["-i", include])
+    if exclude:
+        cmd.extend(["-e", exclude])
+    if regions:
+        cmd.extend(["-r", regions])
+    if regions_file:
+        cmd.extend(["-R", str(regions_file)])
+    if samples:
+        cmd.extend(["-s", samples])
+    if samples_file:
+        cmd.extend(["-S", str(samples_file)])
+    if threads > 1:
+        cmd.extend(["--threads", str(threads)])
+
+    return _run_bcftools_command(cmd, output)
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bcftools/app/bcftools_shim_server.py

@@ -0,0 +1,55 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import ast
+from pathlib import Path
+
+from mcp.server.fastmcp import FastMCP
+
+
+SOURCE_SERVER = Path('/225040511/project/BioScientist/agent_system/toolbase/mcp_batch_from_help_txt/mcp_bcftools/app/bcftools_server.py')
+LOCAL_SERVER = Path(__file__).with_name(SOURCE_SERVER.name)
+SERVER_NAME = 'biosci_bcftools'
+
+
+class _ShimMCP:
+    @staticmethod
+    def tool(*args, **kwargs):
+        if args and callable(args[0]) and len(args) == 1 and not kwargs:
+            return args[0]
+        def _decorator(fn):
+            return fn
+        return _decorator
+
+
+def _resolve_source_server():
+    if LOCAL_SERVER.exists() and LOCAL_SERVER.name != Path(__file__).name:
+        return LOCAL_SERVER
+    return SOURCE_SERVER
+
+
+def _load_functions():
+    source_server = _resolve_source_server()
+    code = source_server.read_text(encoding="utf-8")
+    tree = ast.parse(code, filename=str(source_server))
+    function_names = [n.name for n in tree.body if isinstance(n, ast.FunctionDef) and not n.name.startswith("_")]
+    namespace = {
+        "__name__": "__mcp_source__",
+        "mcp": _ShimMCP(),
+    }
+    exec(compile(code, str(source_server), "exec"), namespace, namespace)
+    loaded = []
+    for name in function_names:
+        fn = namespace.get(name)
+        if callable(fn):
+            loaded.append(fn)
+    return loaded
+
+
+mcp = FastMCP(SERVER_NAME)
+for _fn in _load_functions():
+    mcp.tool()(_fn)
+
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bcftools/docker-compose.yml

@@ -0,0 +1,22 @@
+version: '3.8'
+
+services:
+  mcp-bcftools:
+    build: .
+    image: mcp-bcftools:latest
+    container_name: mcp-bcftools
+    ports:
+      - "8000:8000"
+    environment:
+      - MCP_SERVER_NAME=bcftools
+    volumes:
+      - ./workspace:/app/workspace
+      - ./output:/app/output
+    restart: unless-stopped
+    healthcheck:
+      test: ["CMD", "python", "-c", "import sys; sys.exit(0)"]
+      interval: 30s
+      timeout: 10s
+      retries: 3
+      start_period: 5s
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bcftools/environment.yaml

@@ -0,0 +1,10 @@
+
+name: mcp-tool
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - bcftools
+  - python=3.10
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bcftools/requirements.txt

@@ -0,0 +1,2 @@
+fastmcp
+mcp

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-alabaster.spatial/Dockerfile

@@ -0,0 +1,40 @@
+
+FROM python:3.10-slim
+
+# Install system dependencies
+RUN apt-get update &&     apt-get install -y         default-jre         wget         curl     && apt-get clean     && rm -rf /var/lib/apt/lists/*
+
+# Install Miniconda
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh &&     bash /tmp/miniconda.sh -b -p /opt/conda &&     rm /tmp/miniconda.sh
+
+# Add conda to PATH
+ENV PATH="/opt/conda/bin:$PATH"
+
+# Install bioconductor-alabaster.spatial via conda (e.g., from bioconda)
+RUN conda install -c bioconda bioconductor-alabaster.spatial -y &&     conda clean -a
+
+# Install Python dependencies
+RUN pip install uv
+RUN uv pip install --system fastmcp
+
+# Create app directory
+WORKDIR /app
+
+# Copy your MCP server
+COPY app/bioconductor-alabaster.spatial_server.py /app/
+
+# Create workspace and output directories
+RUN mkdir -p /app/workspace /app/output
+
+# Make sure the server script is executable
+RUN chmod +x /app/bioconductor-alabaster.spatial_server.py
+
+# Expose port for MCP over HTTP (optional)
+EXPOSE 8000
+
+# Health check
+HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3     CMD python -c "import sys; sys.exit(0)"
+
+# Default command runs the MCP server via stdio
+CMD ["python", "/app/bioconductor-alabaster.spatial_server.py"]
+        

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-alabaster.spatial/app/bioconductor-alabaster.spatial_server.py

@@ -0,0 +1,297 @@
+import subprocess
+import tempfile
+import os
+from pathlib import Path
+from typing import Optional, List, Dict, Any
+
+# No need to import mcp as per instructions.
+
+def _run_r_script(script_content: str, cwd: Path) -> Dict[str, Any]:
+    """
+    Executes an R script and captures its output.
+
+    Args:
+        script_content: The R script as a string.
+        cwd: The current working directory for the R script execution.
+
+    Returns:
+        A dictionary containing execution details, including command, stdout, stderr,
+        and an error message if the script fails.
+    """
+    with tempfile.NamedTemporaryFile(mode="w", suffix=".R", delete=False) as r_script_file:
+        r_script_file.write(script_content)
+        r_script_path = Path(r_script_file.name)
+
+    command = ["Rscript", str(r_script_path)]
+    
+    stdout = ""
+    stderr = ""
+    try:
+        process = subprocess.run(
+            command,
+            capture_output=True,
+            text=True,
+            check=True,
+            cwd=cwd # Run R script in the specified working directory
+        )
+        stdout = process.stdout
+        stderr = process.stderr
+    except subprocess.CalledProcessError as e:
+        return {
+            "command_executed": " ".join(command),
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "error": f"R script execution failed with exit code {e.returncode}",
+            "output_files": [],
+        }
+    finally:
+        os.remove(r_script_path)
+
+    return {
+        "command_executed": " ".join(command),
+        "stdout": stdout,
+        "stderr": stderr,
+        "output_files": [], # This will be populated by the calling function
+    }
+
+from mcp.server.fastmcp import FastMCP
+
+SERVER_NAME = 'local_bioconductor_alabaster_spatial'
+mcp = FastMCP(SERVER_NAME)
+
+@mcp.tool()
+def save_spatial_experiment(
+    input_spatial_experiment_rds: Path,
+    output_directory: Path,
+    precomputed: bool = True,
+    deferred: bool = False,
+    compression_level: Optional[int] = None,
+    compression_filter: Optional[str] = None,
+) -> Dict[str, Any]:
+    """
+    Saves a SpatialExperiment object and its images into file artifacts.
+
+    This function serializes an R SpatialExperiment object (provided as an RDS file)
+    into a directory structure of file artifacts, offering a portable alternative
+    to direct RDS serialization. The `alabaster.spatial` package handles the
+    conversion and storage of the object and its associated images.
+
+    Args:
+        input_spatial_experiment_rds: Path to an RDS file containing the SpatialExperiment object.
+                                      This file must exist.
+        output_directory: Path to the directory where the file artifacts will be saved.
+                          This directory will be created if it does not exist.
+        precomputed: Logical, whether to save precomputed results. Defaults to TRUE.
+        deferred: Logical, whether to defer saving of certain components. Defaults to FALSE.
+        compression_level: Integer, compression level for HDF5 files (0-9).
+                           If None, R's default (typically 6) will be used.
+        compression_filter: String, compression filter for HDF5 files (e.g., "gzip", "lzf").
+                            If None, no specific filter is applied.
+
+    Returns:
+        A dictionary containing execution details, including the command executed,
+        stdout, stderr, and a list of generated output files/directories.
+        Returns an error if input file is not found, output path is invalid,
+        compression_level is out of range, or R script execution fails.
+    """
+    # Input validation
+    if not input_spatial_experiment_rds.is_file():
+        return {
+            "command_executed": "",
+            "stdout": "",
+            "stderr": f"Error: Input RDS file not found at '{input_spatial_experiment_rds}'",
+            "output_files": [],
+        }
+    
+    if output_directory.exists() and not output_directory.is_dir():
+        return {
+            "command_executed": "",
+            "stdout": "",
+            "stderr": f"Error: Output path '{output_directory}' exists but is not a directory.",
+            "output_files": [],
+        }
+    
+    try:
+        output_directory.mkdir(parents=True, exist_ok=True)
+    except OSError as e:
+        return {
+            "command_executed": "",
+            "stdout": "",
+            "stderr": f"Error: Could not create output directory '{output_directory}': {e}",
+            "output_files": [],
+        }
+
+    if compression_level is not None and not (0 <= compression_level <= 9):
+        return {
+            "command_executed": "",
+            "stdout": "",
+            "stderr": f"Error: 'compression_level' must be an integer between 0 and 9, got {compression_level}",
+            "output_files": [],
+        }
+
+    # Construct R script
+    r_script_template = """
+    suppressPackageStartupMessages({{
+        library(alabaster.spatial)
+        library(SpatialExperiment)
+        library(S4Vectors)
+        library(alabaster.base)
+        library(rhdf5) # Explicitly load for HDF5 operations
+    }})
+
+    input_rds_path <- "{input_rds_path}"
+    output_dir_path <- "{output_dir_path}"
+
+    # Load the SpatialExperiment object
+    if (!file.exists(input_rds_path)) {{
+        stop(paste0("Input RDS file not found: ", input_rds_path))
+    }}
+    se_object <- readRDS(input_rds_path)
+
+    # Ensure it's a SpatialExperiment object
+    if (!is(se_object, "SpatialExperiment")) {{
+        stop("Loaded object is not a SpatialExperiment object.")
+    }}
+
+    # Prepare additional arguments for saveObject
+    save_args <- list(
+        x = se_object,
+        path = output_dir_path,
+        precomputed = {precomputed_r},
+        deferred = {deferred_r}
+    )
+    {compression_level_r}
+    {compression_filter_r}
+
+    # Call saveObject
+    do.call(alabaster.spatial::saveObject, save_args)
+
+    message(paste0("SpatialExperiment object saved to: ", output_dir_path))
+    """
+
+    compression_level_r = f"save_args$compression_level <- {compression_level}" if compression_level is not None else ""
+    compression_filter_r = f"save_args$compression_filter <- '{compression_filter}'" if compression_filter is not None else ""
+
+    r_script_content = r_script_template.format(
+        input_rds_path=input_spatial_experiment_rds.resolve(),
+        output_dir_path=output_directory.resolve(),
+        precomputed_r=str(precomputed).upper(),
+        deferred_r=str(deferred).upper(),
+        compression_level_r=compression_level_r,
+        compression_filter_r=compression_filter_r,
+    )
+
+    # Execute R script
+    result = _run_r_script(r_script_content, output_directory.parent) # Run in parent dir to allow output_directory creation
+    if "error" in result:
+        return result
+    
+    result["output_files"] = [str(output_directory.resolve())]
+    return result
+
+
+@mcp.tool()
+def read_spatial_experiment(
+    input_directory: Path,
+    output_spatial_experiment_rds: Path,
+    metadata_only: bool = False,
+    image_format: Optional[str] = None,
+) -> Dict[str, Any]:
+    """
+    Loads a SpatialExperiment object and its images from file artifacts.
+
+    This function reconstructs an R SpatialExperiment object from a directory
+    of file artifacts previously saved by `save_spatial_experiment`.
+
+    Args:
+        input_directory: Path to the directory containing the file artifacts.
+                         This directory must exist and be valid.
+        output_spatial_experiment_rds: Path to the output RDS file where the
+                                       reconstructed SpatialExperiment object will be saved.
+                                       The parent directory will be created if it does not exist.
+        metadata_only: Logical, whether to only load metadata and not the full data.
+                       Defaults to FALSE.
+        image_format: String, desired image format for loading (e.g., "png", "jpeg", "tiff").
+                      If None, images are loaded in their original format.
+
+    Returns:
+        A dictionary containing execution details, including the command executed,
+        stdout, stderr, and a list of generated output files.
+        Returns an error if input directory is not found, output path is invalid,
+        or R script execution fails.
+    """
+    # Input validation
+    if not input_directory.is_dir():
+        return {
+            "command_executed": "",
+            "stdout": "",
+            "stderr": f"Error: Input directory not found at '{input_directory}'",
+            "output_files": [],
+        }
+    
+    if output_spatial_experiment_rds.exists() and not output_spatial_experiment_rds.is_file():
+        return {
+            "command_executed": "",
+            "stdout": "",
+            "stderr": f"Error: Output path '{output_spatial_experiment_rds}' exists but is not a file.",
+            "output_files": [],
+        }
+    
+    try:
+        output_spatial_experiment_rds.parent.mkdir(parents=True, exist_ok=True)
+    except OSError as e:
+        return {
+            "command_executed": "",
+            "stdout": "",
+            "stderr": f"Error: Could not create parent directory for output RDS file '{output_spatial_experiment_rds}': {e}",
+            "output_files": [],
+        }
+
+    # Construct R script
+    r_script_template = """
+    suppressPackageStartupMessages({{
+        library(alabaster.spatial)
+        library(SpatialExperiment)
+        library(S4Vectors)
+        library(alabaster.base)
+        library(rhdf5) # Explicitly load for HDF5 operations
+    }})
+
+    input_dir_path <- "{input_dir_path}"
+    output_rds_path <- "{output_rds_path}"
+
+    # Prepare additional arguments for readObject
+    read_args <- list(
+        path = input_dir_path,
+        metadata.only = {metadata_only_r}
+    )
+    {image_format_r}
+
+    # Call readObject
+    se_object <- do.call(alabaster.spatial::readObject, read_args)
+
+    # Save the SpatialExperiment object to RDS
+    saveRDS(se_object, file = output_rds_path)
+
+    message(paste0("SpatialExperiment object loaded from: ", input_dir_path, " and saved to: ", output_rds_path))
+    """
+
+    image_format_r = f"read_args$image.format <- '{image_format}'" if image_format is not None else ""
+
+    r_script_content = r_script_template.format(
+        input_dir_path=input_directory.resolve(),
+        output_rds_path=output_spatial_experiment_rds.resolve(),
+        metadata_only_r=str(metadata_only).upper(),
+        image_format_r=image_format_r,
+    )
+
+    # Execute R script
+    result = _run_r_script(r_script_content, output_spatial_experiment_rds.parent)
+    if "error" in result:
+        return result
+    
+    result["output_files"] = [str(output_spatial_experiment_rds.resolve())]
+    return result
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-alabaster.spatial/app/bioconductor-alabaster.spatial_shim_server.py

@@ -0,0 +1,55 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import ast
+from pathlib import Path
+
+from mcp.server.fastmcp import FastMCP
+
+
+SOURCE_SERVER = Path('/225040511/project/BioScientist/agent_system/toolbase/mcp_batch_from_manual_txt/mcp_bioconductor-alabaster.spatial/app/bioconductor-alabaster.spatial_server.py')
+LOCAL_SERVER = Path(__file__).with_name(SOURCE_SERVER.name)
+SERVER_NAME = 'biosci_bioconductor_alabaster_spatial'
+
+
+class _ShimMCP:
+    @staticmethod
+    def tool(*args, **kwargs):
+        if args and callable(args[0]) and len(args) == 1 and not kwargs:
+            return args[0]
+        def _decorator(fn):
+            return fn
+        return _decorator
+
+
+def _resolve_source_server():
+    if LOCAL_SERVER.exists() and LOCAL_SERVER.name != Path(__file__).name:
+        return LOCAL_SERVER
+    return SOURCE_SERVER
+
+
+def _load_functions():
+    source_server = _resolve_source_server()
+    code = source_server.read_text(encoding="utf-8")
+    tree = ast.parse(code, filename=str(source_server))
+    function_names = [n.name for n in tree.body if isinstance(n, ast.FunctionDef) and not n.name.startswith("_")]
+    namespace = {
+        "__name__": "__mcp_source__",
+        "mcp": _ShimMCP(),
+    }
+    exec(compile(code, str(source_server), "exec"), namespace, namespace)
+    loaded = []
+    for name in function_names:
+        fn = namespace.get(name)
+        if callable(fn):
+            loaded.append(fn)
+    return loaded
+
+
+mcp = FastMCP(SERVER_NAME)
+for _fn in _load_functions():
+    mcp.tool()(_fn)
+
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-alabaster.spatial/docker-compose.yml

@@ -0,0 +1,22 @@
+version: '3.8'
+
+services:
+  mcp-bioconductor-alabaster.spatial:
+    build: .
+    image: mcp-bioconductor-alabaster.spatial:latest
+    container_name: mcp-bioconductor-alabaster.spatial
+    ports:
+      - "8000:8000"
+    environment:
+      - MCP_SERVER_NAME=bioconductor-alabaster.spatial
+    volumes:
+      - ./workspace:/app/workspace
+      - ./output:/app/output
+    restart: unless-stopped
+    healthcheck:
+      test: ["CMD", "python", "-c", "import sys; sys.exit(0)"]
+      interval: 30s
+      timeout: 10s
+      retries: 3
+      start_period: 5s
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-alabaster.spatial/environment.yaml

@@ -0,0 +1,10 @@
+
+name: mcp-tool
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - bioconductor-alabaster.spatial
+  - python=3.10
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-alabaster.spatial/requirements.txt

@@ -0,0 +1,2 @@
+fastmcp
+mcp

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-awaggregator/app/bioconductor-awaggregator_server.py

@@ -0,0 +1,222 @@
+import subprocess
+from pathlib import Path
+from typing import Dict, List
+
+# MCP decorator is assumed to be available in the execution environment.
+# No import is needed as per the instructions.
+# class mcp:
+#     @staticmethod
+#     def tool():
+#         def decorator(func):
+#             return func
+#         return decorator
+
+
+def _run_awaggregator_cli(cmd: List[str], output_map: Dict[str, Path]) -> Dict:
+    """
+    A private helper function to execute the awaggregator wrapper script,
+    handle subprocess execution, and format the output.
+    """
+    command_executed = " ".join(map(str, cmd))
+    try:
+        result = subprocess.run(
+            cmd,
+            capture_output=True,
+            text=True,
+            check=True,
+        )
+        return {
+            "command_executed": command_executed,
+            "stdout": result.stdout,
+            "stderr": result.stderr,
+            "output_files": {key: str(path) for key, path in output_map.items()},
+        }
+    except FileNotFoundError:
+        # This error is raised if 'Rscript' or the wrapper is not in PATH
+        return {
+            "command_executed": command_executed,
+            "stdout": "",
+            "stderr": "Error: 'Rscript' or the wrapper script 'run_awaggregator.R' not found. "
+                      "Please ensure R and the tool's wrapper script are in the system's PATH.",
+            "output_files": {},
+            "error": "Executable not found."
+        }
+    except subprocess.CalledProcessError as e:
+        # This error is raised for non-zero exit codes from the tool
+        return {
+            "command_executed": command_executed,
+            "stdout": e.stdout,
+            "stderr": e.stderr,
+            "output_files": {},
+            "error": f"Tool execution failed with exit code {e.returncode}",
+        }
+
+
+from mcp.server.fastmcp import FastMCP
+
+SERVER_NAME = 'local_bioconductor_awaggregator'
+mcp = FastMCP(SERVER_NAME)
+
+@mcp.tool()
+def aw_weight(
+    expression_matrix: Path,
+    design_matrix: Path,
+    output_weights_file: Path,
+):
+    """
+    Computes adaptive weights for gene expression data meta-analysis.
+
+    This tool wraps the `aw.weight` function from the Bioconductor `awaggregator` package.
+    It takes an expression data matrix and a design matrix to compute weights for each study.
+    The resulting weights matrix can be used with the `aw_mean` or `aw_median` tools.
+
+    Args:
+        expression_matrix: Path to the input expression data matrix file (e.g., CSV, TSV).
+                           Rows should represent genes and columns should represent samples.
+        design_matrix: Path to the input design matrix file (e.g., CSV, TSV).
+                       This matrix describes the experimental design.
+        output_weights_file: Path to save the computed weights matrix.
+
+    Returns:
+        A dictionary containing the execution command, stdout, stderr, and a
+        path to the output weights file.
+    """
+    # --- Input Validation ---
+    if not expression_matrix.is_file():
+        raise FileNotFoundError(f"Input expression matrix file not found: {expression_matrix}")
+    if not design_matrix.is_file():
+        raise FileNotFoundError(f"Input design matrix file not found: {design_matrix}")
+
+    output_dir = output_weights_file.parent
+    if not output_dir.is_dir():
+        raise NotADirectoryError(f"Output directory does not exist: {output_dir}")
+
+    # --- Command Construction ---
+    # Assumes a wrapper script 'run_awaggregator.R' is available that handles CLI parsing.
+    cmd = [
+        "Rscript",
+        "run_awaggregator.R",
+        "--method",
+        "weight",
+        "--expression",
+        expression_matrix,
+        "--design",
+        design_matrix,
+        "--output",
+        output_weights_file,
+    ]
+
+    return _run_awaggregator_cli(cmd, {"weights_matrix": output_weights_file})
+
+
+@mcp.tool()
+def aw_mean(
+    data_matrix: Path,
+    weights_matrix: Path,
+    output_file: Path,
+    na_rm: bool = False,
+):
+    """
+    Performs adaptive-weighted mean aggregation on gene expression data.
+
+    This tool wraps the `aw.mean` function from the Bioconductor `awaggregator` package.
+    It takes a data matrix and a corresponding weights matrix to compute the weighted mean
+    for each gene (row) across studies (columns).
+
+    Args:
+        data_matrix: Path to the input data matrix file (e.g., CSV, TSV).
+                     Rows should represent genes and columns should represent studies.
+        weights_matrix: Path to the input weights matrix file (e.g., CSV, TSV).
+                        Must have the same dimensions as the data matrix.
+        output_file: Path to save the aggregated results.
+        na_rm: If True, NA values will be removed before computation. Defaults to False.
+
+    Returns:
+        A dictionary containing the execution command, stdout, stderr, and a
+        path to the output file.
+    """
+    # --- Input Validation ---
+    if not data_matrix.is_file():
+        raise FileNotFoundError(f"Input data matrix file not found: {data_matrix}")
+    if not weights_matrix.is_file():
+        raise FileNotFoundError(f"Input weights matrix file not found: {weights_matrix}")
+
+    output_dir = output_file.parent
+    if not output_dir.is_dir():
+        raise NotADirectoryError(f"Output directory does not exist: {output_dir}")
+
+    # --- Command Construction ---
+    cmd = [
+        "Rscript",
+        "run_awaggregator.R",
+        "--method",
+        "mean",
+        "--data",
+        data_matrix,
+        "--weights",
+        weights_matrix,
+        "--output",
+        output_file,
+    ]
+    if na_rm:
+        cmd.append("--na-rm")
+
+    return _run_awaggregator_cli(cmd, {"aggregated_data": output_file})
+
+
+@mcp.tool()
+def aw_median(
+    data_matrix: Path,
+    weights_matrix: Path,
+    output_file: Path,
+    na_rm: bool = False,
+):
+    """
+    Performs adaptive-weighted median aggregation on gene expression data.
+
+    This tool wraps the `aw.median` function from the Bioconductor `awaggregator` package.
+    It takes a data matrix and a corresponding weights matrix to compute the weighted median
+    for each gene (row) across studies (columns).
+
+    Args:
+        data_matrix: Path to the input data matrix file (e.g., CSV, TSV).
+                     Rows should represent genes and columns should represent studies.
+        weights_matrix: Path to the input weights matrix file (e.g., CSV, TSV).
+                        Must have the same dimensions as the data matrix.
+        output_file: Path to save the aggregated results.
+        na_rm: If True, NA values will be removed before computation. Defaults to False.
+
+    Returns:
+        A dictionary containing the execution command, stdout, stderr, and a
+        path to the output file.
+    """
+    # --- Input Validation ---
+    if not data_matrix.is_file():
+        raise FileNotFoundError(f"Input data matrix file not found: {data_matrix}")
+    if not weights_matrix.is_file():
+        raise FileNotFoundError(f"Input weights matrix file not found: {weights_matrix}")
+
+    output_dir = output_file.parent
+    if not output_dir.is_dir():
+        raise NotADirectoryError(f"Output directory does not exist: {output_dir}")
+
+    # --- Command Construction ---
+    cmd = [
+        "Rscript",
+        "run_awaggregator.R",
+        "--method",
+        "median",
+        "--data",
+        data_matrix,
+        "--weights",
+        weights_matrix,
+        "--output",
+        output_file,
+    ]
+    if na_rm:
+        cmd.append("--na-rm")
+
+    return _run_awaggregator_cli(cmd, {"aggregated_data": output_file})
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cardspa/app/bioconductor-cardspa_shim_server.py

@@ -0,0 +1,55 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import ast
+from pathlib import Path
+
+from mcp.server.fastmcp import FastMCP
+
+
+SOURCE_SERVER = Path('/225040511/project/BioScientist/agent_system/toolbase/mcp_batch_from_manual_txt/mcp_bioconductor-cardspa/app/bioconductor-cardspa_server.py')
+LOCAL_SERVER = Path(__file__).with_name(SOURCE_SERVER.name)
+SERVER_NAME = 'biosci_bioconductor_cardspa'
+
+
+class _ShimMCP:
+    @staticmethod
+    def tool(*args, **kwargs):
+        if args and callable(args[0]) and len(args) == 1 and not kwargs:
+            return args[0]
+        def _decorator(fn):
+            return fn
+        return _decorator
+
+
+def _resolve_source_server():
+    if LOCAL_SERVER.exists() and LOCAL_SERVER.name != Path(__file__).name:
+        return LOCAL_SERVER
+    return SOURCE_SERVER
+
+
+def _load_functions():
+    source_server = _resolve_source_server()
+    code = source_server.read_text(encoding="utf-8")
+    tree = ast.parse(code, filename=str(source_server))
+    function_names = [n.name for n in tree.body if isinstance(n, ast.FunctionDef) and not n.name.startswith("_")]
+    namespace = {
+        "__name__": "__mcp_source__",
+        "mcp": _ShimMCP(),
+    }
+    exec(compile(code, str(source_server), "exec"), namespace, namespace)
+    loaded = []
+    for name in function_names:
+        fn = namespace.get(name)
+        if callable(fn):
+            loaded.append(fn)
+    return loaded
+
+
+mcp = FastMCP(SERVER_NAME)
+for _fn in _load_functions():
+    mcp.tool()(_fn)
+
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cellid/Dockerfile

@@ -0,0 +1,40 @@
+
+FROM python:3.10-slim
+
+# Install system dependencies
+RUN apt-get update &&     apt-get install -y         default-jre         wget         curl     && apt-get clean     && rm -rf /var/lib/apt/lists/*
+
+# Install Miniconda
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh &&     bash /tmp/miniconda.sh -b -p /opt/conda &&     rm /tmp/miniconda.sh
+
+# Add conda to PATH
+ENV PATH="/opt/conda/bin:$PATH"
+
+# Install bioconductor-cellid via conda (e.g., from bioconda)
+RUN conda install -c bioconda bioconductor-cellid -y &&     conda clean -a
+
+# Install Python dependencies
+RUN pip install uv
+RUN uv pip install --system fastmcp
+
+# Create app directory
+WORKDIR /app
+
+# Copy your MCP server
+COPY app/bioconductor-cellid_server.py /app/
+
+# Create workspace and output directories
+RUN mkdir -p /app/workspace /app/output
+
+# Make sure the server script is executable
+RUN chmod +x /app/bioconductor-cellid_server.py
+
+# Expose port for MCP over HTTP (optional)
+EXPOSE 8000
+
+# Health check
+HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3     CMD python -c "import sys; sys.exit(0)"
+
+# Default command runs the MCP server via stdio
+CMD ["python", "/app/bioconductor-cellid_server.py"]
+        

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cellid/app/bioconductor-cellid_server.py

@@ -0,0 +1,288 @@
+import subprocess
+import os
+from pathlib import Path
+from typing import Optional, List, Union
+import tempfile
+
+def run_r_command(script_content: str):
+    """Helper function to execute R code via Rscript"""
+    with tempfile.NamedTemporaryFile(mode='w', suffix='.R', delete=False) as tmp:
+        tmp.write(script_content)
+        tmp_path = tmp.name
+
+    try:
+        result = subprocess.run(
+            ["Rscript", tmp_path],
+            capture_output=True,
+            text=True,
+            check=True
+        )
+        return result.stdout, result.stderr
+    except subprocess.CalledProcessError as e:
+        raise RuntimeError(f"R execution failed: {e.stderr}\nStdout: {e.stdout}")
+    finally:
+        if os.path.exists(tmp_path):
+            os.remove(tmp_path)
+
+from mcp.server.fastmcp import FastMCP
+
+SERVER_NAME = 'local_bioconductor_cellid'
+mcp = FastMCP(SERVER_NAME)
+
+@mcp.tool()
+def cellid_run_mca(
+    input_rds: str,
+    output_rds: str,
+    nmcs: int = 50,
+    assay: str = "RNA",
+    slot: str = "counts",
+    features: Optional[List[str]] = None
+):
+    """
+    Performs Multiple Correspondence Analysis (MCA) on a SingleCellExperiment or Seurat object.
+    MCA allows for the simultaneous representation of cells and genes in a common low-dimensional space.
+    """
+    input_path = Path(input_rds)
+    output_path = Path(output_rds)
+
+    if not input_path.exists():
+        return {"error": f"Input file {input_rds} not found."}
+    
+    if nmcs <= 0:
+        return {"error": "nmcs must be a positive integer."}
+
+    features_r = "NULL"
+    if features:
+        features_formatted = ", ".join([f"'{f}'" for f in features])
+        features_r = f"c({features_formatted})"
+
+    r_script = f"""
+    library(CelliD)
+    library(Seurat)
+    library(SingleCellExperiment)
+
+    obj <- readRDS("{input_path}")
+    
+    # Run MCA
+    obj <- RunMCA(obj, nmcs = {nmcs}, assay = "{assay}", slot = "{slot}", features = {features_r})
+    
+    saveRDS(obj, "{output_path}")
+    """
+
+    try:
+        stdout, stderr = run_r_command(r_script)
+        return {
+            "command_executed": "RunMCA",
+            "stdout": stdout,
+            "stderr": stderr,
+            "output_files": [str(output_path)]
+        }
+    except Exception as e:
+        return {"error": str(e)}
+
+@mcp.tool()
+def cellid_get_cell_gene_set(
+    input_rds: str,
+    output_csv: str,
+    dims: int = 50,
+    n_features: int = 200
+):
+    """
+    Extracts the top gene signatures for each individual cell based on MCA coordinates.
+    """
+    input_path = Path(input_rds)
+    output_path = Path(output_csv)
+
+    if not input_path.exists():
+        return {"error": f"Input file {input_rds} not found."}
+    
+    if dims <= 0 or n_features <= 0:
+        return {"error": "dims and n_features must be positive integers."}
+
+    r_script = f"""
+    library(CelliD)
+    library(Seurat)
+    library(SingleCellExperiment)
+    library(data.table)
+
+    obj <- readRDS("{input_path}")
+    
+    # Extract gene sets per cell
+    # dims is treated as 1:dims
+    gene_sets <- GetCellGeneSet(obj, dims = 1:{dims}, n.features = {n_features})
+    
+    # Convert list to a data table for export
+    # Each column is a cell, rows are top genes
+    max_len <- max(sapply(gene_sets, length))
+    dt <- as.data.frame(lapply(gene_sets, function(x) c(x, rep(NA, max_len - length(x)))))
+    
+    write.csv(dt, "{output_path}", row.names = FALSE)
+    """
+
+    try:
+        stdout, stderr = run_r_command(r_script)
+        return {
+            "command_executed": "GetCellGeneSet",
+            "stdout": stdout,
+            "stderr": stderr,
+            "output_files": [str(output_path)]
+        }
+    except Exception as e:
+        return {"error": str(e)}
+
+@mcp.tool()
+def cellid_run_cell_hgt(
+    input_rds: str,
+    pathways_gmt: str,
+    output_rds: str,
+    dims: int = 50,
+    n_features: int = 200,
+    min_size: int = 5
+):
+    """
+    Performs cell-type assignment or functional enrichment using a Hypergeometric Test (HGT).
+    Matches per-cell gene signatures against a reference database (GMT format).
+    """
+    input_path = Path(input_rds)
+    gmt_path = Path(pathways_gmt)
+    output_path = Path(output_rds)
+
+    if not input_path.exists():
+        return {"error": f"Input RDS {input_rds} not found."}
+    if not gmt_path.exists():
+        return {"error": f"GMT file {pathways_gmt} not found."}
+
+    r_script = f"""
+    library(CelliD)
+    library(Seurat)
+    library(SingleCellExperiment)
+    library(fgsea)
+
+    obj <- readRDS("{input_path}")
+    pathways <- gmtPathways("{gmt_path}")
+    
+    # Run Hypergeometric Test
+    # Returns a matrix of -log10(p-value)
+    hgt_matrix <- RunCellHGT(obj, pathways = pathways, dims = 1:{dims}, n.features = {n_features}, minSize = {min_size})
+    
+    # If Seurat, we can add it as an assay or metadata
+    if(inherits(obj, "Seurat")) {{
+        obj[["HGT"]] <- CreateAssayObject(counts = hgt_matrix)
+    }} else {{
+        # For SCE, add to altExp
+        altExp(obj, "HGT") <- SummarizedExperiment(assays = list(counts = hgt_matrix))
+    }}
+    
+    saveRDS(obj, "{output_path}")
+    """
+
+    try:
+        stdout, stderr = run_r_command(r_script)
+        return {
+            "command_executed": "RunCellHGT",
+            "stdout": stdout,
+            "stderr": stderr,
+            "output_files": [str(output_path)]
+        }
+    except Exception as e:
+        return {"error": str(e)}
+
+@mcp.tool()
+def cellid_run_gsea(
+    input_rds: str,
+    pathways_gmt: str,
+    output_rds: str,
+    dims: int = 50
+):
+    """
+    Performs Gene Set Enrichment Analysis (GSEA) on cells using the MCA gene rankings.
+    """
+    input_path = Path(input_rds)
+    gmt_path = Path(pathways_gmt)
+    output_path = Path(output_rds)
+
+    if not input_path.exists():
+        return {"error": f"Input RDS {input_rds} not found."}
+    if not gmt_path.exists():
+        return {"error": f"GMT file {pathways_gmt} not found."}
+
+    r_script = f"""
+    library(CelliD)
+    library(Seurat)
+    library(SingleCellExperiment)
+    library(fgsea)
+
+    obj <- readRDS("{input_path}")
+    pathways <- gmtPathways("{gmt_path}")
+    
+    # Run GSEA
+    # This calculates enrichment scores for each cell and each pathway
+    gsea_res <- RunGSEA(obj, pathways = pathways, dims = 1:{dims})
+    
+    # Save results (usually returns a matrix of NES)
+    if(inherits(obj, "Seurat")) {{
+        obj[["GSEA"]] <- CreateAssayObject(counts = gsea_res)
+    }} else {{
+        altExp(obj, "GSEA") <- SummarizedExperiment(assays = list(counts = gsea_res))
+    }}
+    
+    saveRDS(obj, "{output_path}")
+    """
+
+    try:
+        stdout, stderr = run_r_command(r_script)
+        return {
+            "command_executed": "RunGSEA",
+            "stdout": stdout,
+            "stderr": stderr,
+            "output_files": [str(output_path)]
+        }
+    except Exception as e:
+        return {"error": str(e)}
+
+@mcp.tool()
+def cellid_run_group_mca(
+    input_rds: str,
+    group_by: str,
+    output_rds: str,
+    nmcs: int = 50,
+    assay: str = "RNA",
+    slot: str = "counts"
+):
+    """
+    Performs MCA on grouped cells (e.g., by cluster or cell type) rather than individual cells.
+    Useful for extracting group-specific gene signatures.
+    """
+    input_path = Path(input_rds)
+    output_path = Path(output_rds)
+
+    if not input_path.exists():
+        return {"error": f"Input file {input_rds} not found."}
+
+    r_script = f"""
+    library(CelliD)
+    library(Seurat)
+    library(SingleCellExperiment)
+
+    obj <- readRDS("{input_path}")
+    
+    # Run Group MCA
+    # This aggregates cells by the specified metadata column before MCA
+    group_mca <- RunGroupMCA(obj, group.by = "{group_by}", nmcs = {nmcs}, assay = "{assay}", slot = "{slot}")
+    
+    saveRDS(group_mca, "{output_path}")
+    """
+
+    try:
+        stdout, stderr = run_r_command(r_script)
+        return {
+            "command_executed": "RunGroupMCA",
+            "stdout": stdout,
+            "stderr": stderr,
+            "output_files": [str(output_path)]
+        }
+    except Exception as e:
+        return {"error": str(e)}
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cellid/app/bioconductor-cellid_shim_server.py

@@ -0,0 +1,55 @@
+#!/usr/bin/env python3
+from __future__ import annotations
+
+import ast
+from pathlib import Path
+
+from mcp.server.fastmcp import FastMCP
+
+
+SOURCE_SERVER = Path('/225040511/project/BioScientist/agent_system/toolbase/mcp_batch_from_manual_txt/mcp_bioconductor-cellid/app/bioconductor-cellid_server.py')
+LOCAL_SERVER = Path(__file__).with_name(SOURCE_SERVER.name)
+SERVER_NAME = 'biosci_bioconductor_cellid'
+
+
+class _ShimMCP:
+    @staticmethod
+    def tool(*args, **kwargs):
+        if args and callable(args[0]) and len(args) == 1 and not kwargs:
+            return args[0]
+        def _decorator(fn):
+            return fn
+        return _decorator
+
+
+def _resolve_source_server():
+    if LOCAL_SERVER.exists() and LOCAL_SERVER.name != Path(__file__).name:
+        return LOCAL_SERVER
+    return SOURCE_SERVER
+
+
+def _load_functions():
+    source_server = _resolve_source_server()
+    code = source_server.read_text(encoding="utf-8")
+    tree = ast.parse(code, filename=str(source_server))
+    function_names = [n.name for n in tree.body if isinstance(n, ast.FunctionDef) and not n.name.startswith("_")]
+    namespace = {
+        "__name__": "__mcp_source__",
+        "mcp": _ShimMCP(),
+    }
+    exec(compile(code, str(source_server), "exec"), namespace, namespace)
+    loaded = []
+    for name in function_names:
+        fn = namespace.get(name)
+        if callable(fn):
+            loaded.append(fn)
+    return loaded
+
+
+mcp = FastMCP(SERVER_NAME)
+for _fn in _load_functions():
+    mcp.tool()(_fn)
+
+
+if __name__ == "__main__":
+    mcp.run(transport="stdio")

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cellid/docker-compose.yml

@@ -0,0 +1,22 @@
+version: '3.8'
+
+services:
+  mcp-bioconductor-cellid:
+    build: .
+    image: mcp-bioconductor-cellid:latest
+    container_name: mcp-bioconductor-cellid
+    ports:
+      - "8000:8000"
+    environment:
+      - MCP_SERVER_NAME=bioconductor-cellid
+    volumes:
+      - ./workspace:/app/workspace
+      - ./output:/app/output
+    restart: unless-stopped
+    healthcheck:
+      test: ["CMD", "python", "-c", "import sys; sys.exit(0)"]
+      interval: 30s
+      timeout: 10s
+      retries: 3
+      start_period: 5s
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cellid/environment.yaml

@@ -0,0 +1,10 @@
+
+name: mcp-tool
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - bioconductor-cellid
+  - python=3.10
+    

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cellid/requirements.txt

@@ -0,0 +1,2 @@
+fastmcp
+mcp

Biomanus/biomni_web/backend/data/mcp_generated/mcp_bioconductor-cellmigration/Dockerfile

@@ -0,0 +1,40 @@
+
+FROM python:3.10-slim
+
+# Install system dependencies
+RUN apt-get update &&     apt-get install -y         default-jre         wget         curl     && apt-get clean     && rm -rf /var/lib/apt/lists/*
+
+# Install Miniconda
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh &&     bash /tmp/miniconda.sh -b -p /opt/conda &&     rm /tmp/miniconda.sh
+
+# Add conda to PATH
+ENV PATH="/opt/conda/bin:$PATH"
+
+# Install bioconductor-cellmigration via conda (e.g., from bioconda)
+RUN conda install -c bioconda bioconductor-cellmigration -y &&     conda clean -a
+
+# Install Python dependencies
+RUN pip install uv
+RUN uv pip install --system fastmcp
+
+# Create app directory
+WORKDIR /app
+
+# Copy your MCP server
+COPY app/bioconductor-cellmigration_server.py /app/
+
+# Create workspace and output directories
+RUN mkdir -p /app/workspace /app/output
+
+# Make sure the server script is executable
+RUN chmod +x /app/bioconductor-cellmigration_server.py
+
+# Expose port for MCP over HTTP (optional)
+EXPOSE 8000
+
+# Health check
+HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3     CMD python -c "import sys; sys.exit(0)"
+
+# Default command runs the MCP server via stdio
+CMD ["python", "/app/bioconductor-cellmigration_server.py"]
+