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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Duplication_Events/Duplications.tsv

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+Orthogroup	Species Tree Node	Gene Tree Node	Support	Type	Genes 1	Genes 2
+OG0000000	N1	n0	0.75	Non-Terminal	GCF_023573625_PROKKA_02102, GCF_023573625_PROKKA_02106, GCF_003691675_PROKKA_00352, GCF_005280335_PROKKA_01505, GCF_005280335_PROKKA_02339	GCF_003691675_PROKKA_00041, GCF_005280335_PROKKA_01499, GCF_005280335_PROKKA_02472, GCF_005280335_PROKKA_02613, GCF_005280335_PROKKA_00779, GCF_005280335_PROKKA_01768, GCF_005280335_PROKKA_02336, GCF_005280335_PROKKA_02637, GCF_005280335_PROKKA_00146, GCF_003691675_PROKKA_01118, GCF_005280335_PROKKA_02632, GCF_005280335_PROKKA_00044, GCF_005280335_PROKKA_00556, GCF_005280335_PROKKA_00692, GCF_003691675_PROKKA_00012, GCF_023573625_PROKKA_00274, GCF_023573625_PROKKA_01546, GCF_003691675_PROKKA_00312, GCF_002008305_PROKKA_01952, GCF_002008305_PROKKA_01337, GCF_003691675_PROKKA_01818, GCF_002008305_PROKKA_02278, GCF_002008305_PROKKA_02111, GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821, GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077, GCF_023573625_PROKKA_00879, GCF_003691675_PROKKA_01236, GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518, GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175, GCF_003691675_PROKKA_00137, GCF_003691675_PROKKA_01971, GCF_005280335_PROKKA_00227, GCF_005280335_PROKKA_01737, GCF_005280335_PROKKA_02555
+OG0000000	GCF_023573625	n2	1.0	Terminal	GCF_023573625_PROKKA_02102	GCF_023573625_PROKKA_02106
+OG0000000	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01505	GCF_005280335_PROKKA_02339
+OG0000000	N1	n5	0.5	Non-Terminal	GCF_003691675_PROKKA_00041, GCF_005280335_PROKKA_01499, GCF_005280335_PROKKA_02472, GCF_005280335_PROKKA_02613, GCF_005280335_PROKKA_00779, GCF_005280335_PROKKA_01768, GCF_005280335_PROKKA_02336, GCF_005280335_PROKKA_02637, GCF_005280335_PROKKA_00146, GCF_003691675_PROKKA_01118, GCF_005280335_PROKKA_02632, GCF_005280335_PROKKA_00044, GCF_005280335_PROKKA_00556, GCF_005280335_PROKKA_00692, GCF_003691675_PROKKA_00012, GCF_023573625_PROKKA_00274, GCF_023573625_PROKKA_01546, GCF_003691675_PROKKA_00312, GCF_002008305_PROKKA_01952, GCF_002008305_PROKKA_01337, GCF_003691675_PROKKA_01818, GCF_002008305_PROKKA_02278, GCF_002008305_PROKKA_02111, GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821, GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077, GCF_023573625_PROKKA_00879, GCF_003691675_PROKKA_01236, GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518, GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175	GCF_003691675_PROKKA_00137, GCF_003691675_PROKKA_01971, GCF_005280335_PROKKA_00227, GCF_005280335_PROKKA_01737, GCF_005280335_PROKKA_02555
+OG0000000	N1	n6	0.25	Non-Terminal	GCF_003691675_PROKKA_00041, GCF_005280335_PROKKA_01499, GCF_005280335_PROKKA_02472, GCF_005280335_PROKKA_02613, GCF_005280335_PROKKA_00779, GCF_005280335_PROKKA_01768, GCF_005280335_PROKKA_02336, GCF_005280335_PROKKA_02637, GCF_005280335_PROKKA_00146, GCF_003691675_PROKKA_01118, GCF_005280335_PROKKA_02632, GCF_005280335_PROKKA_00044, GCF_005280335_PROKKA_00556, GCF_005280335_PROKKA_00692	GCF_003691675_PROKKA_00012, GCF_023573625_PROKKA_00274, GCF_023573625_PROKKA_01546, GCF_003691675_PROKKA_00312, GCF_002008305_PROKKA_01952, GCF_002008305_PROKKA_01337, GCF_003691675_PROKKA_01818, GCF_002008305_PROKKA_02278, GCF_002008305_PROKKA_02111, GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821, GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077, GCF_023573625_PROKKA_00879, GCF_003691675_PROKKA_01236, GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518, GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175
+OG0000000	N1	n7	0.5	Non-Terminal	GCF_003691675_PROKKA_00041, GCF_005280335_PROKKA_01499, GCF_005280335_PROKKA_02472, GCF_005280335_PROKKA_02613, GCF_005280335_PROKKA_00779, GCF_005280335_PROKKA_01768, GCF_005280335_PROKKA_02336, GCF_005280335_PROKKA_02637, GCF_005280335_PROKKA_00146	GCF_003691675_PROKKA_01118, GCF_005280335_PROKKA_02632, GCF_005280335_PROKKA_00044, GCF_005280335_PROKKA_00556, GCF_005280335_PROKKA_00692
+OG0000000	GCF_005280335	n9	1.0	Terminal	GCF_005280335_PROKKA_01499, GCF_005280335_PROKKA_02472, GCF_005280335_PROKKA_02613, GCF_005280335_PROKKA_00779	GCF_005280335_PROKKA_01768, GCF_005280335_PROKKA_02336, GCF_005280335_PROKKA_02637, GCF_005280335_PROKKA_00146
+OG0000000	GCF_005280335	n10	1.0	Terminal	GCF_005280335_PROKKA_01499, GCF_005280335_PROKKA_02472, GCF_005280335_PROKKA_02613	GCF_005280335_PROKKA_00779
+OG0000000	GCF_005280335	n11	1.0	Terminal	GCF_005280335_PROKKA_01499, GCF_005280335_PROKKA_02472	GCF_005280335_PROKKA_02613
+OG0000000	GCF_005280335	n12	1.0	Terminal	GCF_005280335_PROKKA_01499	GCF_005280335_PROKKA_02472
+OG0000000	GCF_005280335	n13	1.0	Terminal	GCF_005280335_PROKKA_01768, GCF_005280335_PROKKA_02336, GCF_005280335_PROKKA_02637	GCF_005280335_PROKKA_00146
+OG0000000	GCF_005280335	n14	1.0	Terminal	GCF_005280335_PROKKA_01768, GCF_005280335_PROKKA_02336	GCF_005280335_PROKKA_02637
+OG0000000	GCF_005280335	n15	1.0	Terminal	GCF_005280335_PROKKA_01768	GCF_005280335_PROKKA_02336
+OG0000000	GCF_005280335	n17	1.0	Terminal	GCF_005280335_PROKKA_02632	GCF_005280335_PROKKA_00044, GCF_005280335_PROKKA_00556, GCF_005280335_PROKKA_00692
+OG0000000	GCF_005280335	n18	1.0	Terminal	GCF_005280335_PROKKA_00044	GCF_005280335_PROKKA_00556, GCF_005280335_PROKKA_00692
+OG0000000	GCF_005280335	n19	1.0	Terminal	GCF_005280335_PROKKA_00556	GCF_005280335_PROKKA_00692
+OG0000000	N2	n20	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_00012	GCF_023573625_PROKKA_00274, GCF_023573625_PROKKA_01546, GCF_003691675_PROKKA_00312, GCF_002008305_PROKKA_01952, GCF_002008305_PROKKA_01337, GCF_003691675_PROKKA_01818, GCF_002008305_PROKKA_02278, GCF_002008305_PROKKA_02111, GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821, GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077, GCF_023573625_PROKKA_00879, GCF_003691675_PROKKA_01236, GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518, GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175
+OG0000000	N2	n21	0.6666666666666666	Non-Terminal	GCF_023573625_PROKKA_00274, GCF_023573625_PROKKA_01546, GCF_003691675_PROKKA_00312, GCF_002008305_PROKKA_01952, GCF_002008305_PROKKA_01337, GCF_003691675_PROKKA_01818, GCF_002008305_PROKKA_02278, GCF_002008305_PROKKA_02111, GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821, GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077	GCF_023573625_PROKKA_00879, GCF_003691675_PROKKA_01236, GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518, GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175
+OG0000000	GCF_023573625	n23	1.0	Terminal	GCF_023573625_PROKKA_00274	GCF_023573625_PROKKA_01546
+OG0000000	N2	n24	0.6666666666666666	Non-Terminal	GCF_003691675_PROKKA_00312, GCF_002008305_PROKKA_01952, GCF_002008305_PROKKA_01337	GCF_003691675_PROKKA_01818, GCF_002008305_PROKKA_02278, GCF_002008305_PROKKA_02111, GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821, GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077
+OG0000000	GCF_002008305	n26	1.0	Terminal	GCF_002008305_PROKKA_01952	GCF_002008305_PROKKA_01337
+OG0000000	N2	n27	0.6666666666666666	Non-Terminal	GCF_003691675_PROKKA_01818, GCF_002008305_PROKKA_02278, GCF_002008305_PROKKA_02111	GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821, GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077
+OG0000000	GCF_002008305	n29	1.0	Terminal	GCF_002008305_PROKKA_02278	GCF_002008305_PROKKA_02111
+OG0000000	N2	n30	0.6666666666666666	Non-Terminal	GCF_002008305_PROKKA_02068, GCF_003691675_PROKKA_01821	GCF_002008305_PROKKA_00064, GCF_003691675_PROKKA_02077
+OG0000000	N3	n33	0.5	Non-Terminal	GCF_023573625_PROKKA_00879	GCF_003691675_PROKKA_01236, GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518, GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175
+OG0000000	N3	n34	0.5	Non-Terminal	GCF_003691675_PROKKA_01236	GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518, GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175
+OG0000000	N3	n35	1.0	Non-Terminal	GCF_003691675_PROKKA_01968, GCF_023573625_PROKKA_01997, GCF_023573625_PROKKA_00518	GCF_003691675_PROKKA_01160, GCF_023573625_PROKKA_01570, GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175
+OG0000000	GCF_023573625	n37	1.0	Terminal	GCF_023573625_PROKKA_01997	GCF_023573625_PROKKA_00518
+OG0000000	GCF_023573625	n39	1.0	Terminal	GCF_023573625_PROKKA_01570	GCF_023573625_PROKKA_00800, GCF_023573625_PROKKA_01175
+OG0000000	GCF_023573625	n40	1.0	Terminal	GCF_023573625_PROKKA_00800	GCF_023573625_PROKKA_01175
+OG0000000	GCF_003691675	n42	1.0	Terminal	GCF_003691675_PROKKA_00137	GCF_003691675_PROKKA_01971
+OG0000000	GCF_005280335	n43	1.0	Terminal	GCF_005280335_PROKKA_00227	GCF_005280335_PROKKA_01737, GCF_005280335_PROKKA_02555
+OG0000000	GCF_005280335	n44	1.0	Terminal	GCF_005280335_PROKKA_01737	GCF_005280335_PROKKA_02555
+OG0000001	N1	n0	0.75	Non-Terminal	GCF_002008305_PROKKA_01202, GCF_002008305_PROKKA_02030, GCF_023573625_PROKKA_02197, GCF_023573625_PROKKA_02214, GCF_005280335_PROKKA_00896, GCF_005280335_PROKKA_00691	GCF_002008305_PROKKA_00603, GCF_005280335_PROKKA_02671, GCF_003691675_PROKKA_01127, GCF_002008305_PROKKA_01394, GCF_023573625_PROKKA_01996, GCF_023573625_PROKKA_01344, GCF_003691675_PROKKA_01126, GCF_002008305_PROKKA_02266, GCF_002008305_PROKKA_02231, GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229, GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399, GCF_002008305_PROKKA_02226, GCF_002008305_PROKKA_00623, GCF_002008305_PROKKA_02064, GCF_002008305_PROKKA_02232, GCF_002008305_PROKKA_01505, GCF_002008305_PROKKA_00602, GCF_002008305_PROKKA_01070, GCF_002008305_PROKKA_02271, GCF_005280335_PROKKA_02500, GCF_002008305_PROKKA_01504, GCF_005280335_PROKKA_00721
+OG0000001	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_01202	GCF_002008305_PROKKA_02030
+OG0000001	GCF_023573625	n4	1.0	Terminal	GCF_023573625_PROKKA_02197	GCF_023573625_PROKKA_02214
+OG0000001	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_00896	GCF_005280335_PROKKA_00691
+OG0000001	N1	n6	0.5	Non-Terminal	GCF_002008305_PROKKA_00603, GCF_005280335_PROKKA_02671	GCF_003691675_PROKKA_01127, GCF_002008305_PROKKA_01394, GCF_023573625_PROKKA_01996, GCF_023573625_PROKKA_01344, GCF_003691675_PROKKA_01126, GCF_002008305_PROKKA_02266, GCF_002008305_PROKKA_02231, GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229, GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399, GCF_002008305_PROKKA_02226, GCF_002008305_PROKKA_00623, GCF_002008305_PROKKA_02064, GCF_002008305_PROKKA_02232, GCF_002008305_PROKKA_01505, GCF_002008305_PROKKA_00602, GCF_002008305_PROKKA_01070, GCF_002008305_PROKKA_02271, GCF_005280335_PROKKA_02500, GCF_002008305_PROKKA_01504, GCF_005280335_PROKKA_00721
+OG0000001	N1	n8	0.25	Non-Terminal	GCF_003691675_PROKKA_01127, GCF_002008305_PROKKA_01394, GCF_023573625_PROKKA_01996, GCF_023573625_PROKKA_01344, GCF_003691675_PROKKA_01126, GCF_002008305_PROKKA_02266, GCF_002008305_PROKKA_02231, GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229, GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399, GCF_002008305_PROKKA_02226, GCF_002008305_PROKKA_00623, GCF_002008305_PROKKA_02064, GCF_002008305_PROKKA_02232	GCF_002008305_PROKKA_01505, GCF_002008305_PROKKA_00602, GCF_002008305_PROKKA_01070, GCF_002008305_PROKKA_02271, GCF_005280335_PROKKA_02500, GCF_002008305_PROKKA_01504, GCF_005280335_PROKKA_00721
+OG0000001	N2	n9	1.0	Non-Terminal	GCF_003691675_PROKKA_01127, GCF_002008305_PROKKA_01394, GCF_023573625_PROKKA_01996	GCF_023573625_PROKKA_01344, GCF_003691675_PROKKA_01126, GCF_002008305_PROKKA_02266, GCF_002008305_PROKKA_02231, GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229, GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399, GCF_002008305_PROKKA_02226, GCF_002008305_PROKKA_00623, GCF_002008305_PROKKA_02064, GCF_002008305_PROKKA_02232
+OG0000001	GCF_002008305	n14	1.0	Terminal	GCF_002008305_PROKKA_02266, GCF_002008305_PROKKA_02231, GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229, GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399, GCF_002008305_PROKKA_02226	GCF_002008305_PROKKA_00623, GCF_002008305_PROKKA_02064, GCF_002008305_PROKKA_02232
+OG0000001	GCF_002008305	n15	1.0	Terminal	GCF_002008305_PROKKA_02266, GCF_002008305_PROKKA_02231, GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229	GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399, GCF_002008305_PROKKA_02226
+OG0000001	GCF_002008305	n16	1.0	Terminal	GCF_002008305_PROKKA_02266	GCF_002008305_PROKKA_02231, GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229
+OG0000001	GCF_002008305	n17	1.0	Terminal	GCF_002008305_PROKKA_02231	GCF_002008305_PROKKA_02065, GCF_002008305_PROKKA_02229
+OG0000001	GCF_002008305	n18	1.0	Terminal	GCF_002008305_PROKKA_02065	GCF_002008305_PROKKA_02229
+OG0000001	GCF_002008305	n19	1.0	Terminal	GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399	GCF_002008305_PROKKA_02226
+OG0000001	GCF_002008305	n20	1.0	Terminal	GCF_002008305_PROKKA_00174, GCF_002008305_PROKKA_00589, GCF_002008305_PROKKA_00713, GCF_002008305_PROKKA_01399	
+OG0000001	GCF_002008305	n21	1.0	Terminal	GCF_002008305_PROKKA_00623	GCF_002008305_PROKKA_02064, GCF_002008305_PROKKA_02232
+OG0000001	GCF_002008305	n22	1.0	Terminal	GCF_002008305_PROKKA_02064	GCF_002008305_PROKKA_02232
+OG0000001	N1	n23	0.5	Non-Terminal	GCF_002008305_PROKKA_01505, GCF_002008305_PROKKA_00602, GCF_002008305_PROKKA_01070, GCF_002008305_PROKKA_02271, GCF_005280335_PROKKA_02500	GCF_002008305_PROKKA_01504, GCF_005280335_PROKKA_00721
+OG0000001	GCF_002008305	n25	1.0	Terminal	GCF_002008305_PROKKA_01505	GCF_002008305_PROKKA_00602, GCF_002008305_PROKKA_01070, GCF_002008305_PROKKA_02271
+OG0000001	GCF_002008305	n26	1.0	Terminal	GCF_002008305_PROKKA_00602, GCF_002008305_PROKKA_01070, GCF_002008305_PROKKA_02271	
+OG0000002	N0	n0	1.0	Non-Terminal	GCF_005280335_PROKKA_02348, GCF_005280335_PROKKA_02630, GCF_023573625_PROKKA_01019, GCF_002008305_PROKKA_01387, GCF_003691675_PROKKA_00320, GCF_003691675_PROKKA_01328, GCF_003691675_PROKKA_02266, GCF_020097155_PROKKA_00316, GCF_003691675_PROKKA_00787, GCF_003691675_PROKKA_01659, GCF_003691675_PROKKA_00332, GCF_020097155_PROKKA_02231	GCF_002008305_PROKKA_01069, GCF_003691675_PROKKA_01117, GCF_020097155_PROKKA_01795, GCF_020097155_PROKKA_01837, GCF_020097155_PROKKA_02208, GCF_005280335_PROKKA_01280, GCF_005280335_PROKKA_01313, GCF_005280335_PROKKA_01318, GCF_005280335_PROKKA_00757, GCF_005280335_PROKKA_01303, GCF_005280335_PROKKA_02332, GCF_023573625_PROKKA_01540, GCF_020097155_PROKKA_00621, GCF_020097155_PROKKA_00626, GCF_023573625_PROKKA_00113, GCF_023573625_PROKKA_01883
+OG0000002	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_02348	GCF_005280335_PROKKA_02630
+OG0000002	N0	n4	0.2	Non-Terminal	GCF_002008305_PROKKA_01387, GCF_003691675_PROKKA_00320, GCF_003691675_PROKKA_01328, GCF_003691675_PROKKA_02266	GCF_020097155_PROKKA_00316, GCF_003691675_PROKKA_00787, GCF_003691675_PROKKA_01659, GCF_003691675_PROKKA_00332, GCF_020097155_PROKKA_02231
+OG0000002	N0	n6	0.4	Non-Terminal	GCF_020097155_PROKKA_00316, GCF_003691675_PROKKA_00787, GCF_003691675_PROKKA_01659	GCF_003691675_PROKKA_00332, GCF_020097155_PROKKA_02231
+OG0000002	GCF_003691675	n8	1.0	Terminal	GCF_003691675_PROKKA_00787	GCF_003691675_PROKKA_01659
+OG0000002	N0	n10	0.4	Non-Terminal	GCF_002008305_PROKKA_01069, GCF_003691675_PROKKA_01117, GCF_020097155_PROKKA_01795, GCF_020097155_PROKKA_01837, GCF_020097155_PROKKA_02208, GCF_005280335_PROKKA_01280, GCF_005280335_PROKKA_01313, GCF_005280335_PROKKA_01318	GCF_005280335_PROKKA_00757, GCF_005280335_PROKKA_01303, GCF_005280335_PROKKA_02332, GCF_023573625_PROKKA_01540, GCF_020097155_PROKKA_00621, GCF_020097155_PROKKA_00626, GCF_023573625_PROKKA_00113, GCF_023573625_PROKKA_01883
+OG0000002	GCF_020097155	n14	1.0	Terminal	GCF_020097155_PROKKA_01795, GCF_020097155_PROKKA_01837, GCF_020097155_PROKKA_02208	
+OG0000002	GCF_005280335	n15	1.0	Terminal	GCF_005280335_PROKKA_01280	GCF_005280335_PROKKA_01313, GCF_005280335_PROKKA_01318
+OG0000002	GCF_005280335	n16	1.0	Terminal	GCF_005280335_PROKKA_01313	GCF_005280335_PROKKA_01318
+OG0000002	GCF_005280335	n18	1.0	Terminal	GCF_005280335_PROKKA_00757, GCF_005280335_PROKKA_01303, GCF_005280335_PROKKA_02332	
+OG0000002	N0	n19	0.2	Non-Terminal	GCF_023573625_PROKKA_01540	GCF_020097155_PROKKA_00621, GCF_020097155_PROKKA_00626, GCF_023573625_PROKKA_00113, GCF_023573625_PROKKA_01883
+OG0000002	GCF_020097155	n21	1.0	Terminal	GCF_020097155_PROKKA_00621	GCF_020097155_PROKKA_00626
+OG0000002	GCF_023573625	n22	1.0	Terminal	GCF_023573625_PROKKA_00113	GCF_023573625_PROKKA_01883
+OG0000003	N0	n0	1.0	Non-Terminal	GCF_003691675_PROKKA_01116, GCF_023573625_PROKKA_01884, GCF_023573625_PROKKA_00114, GCF_002008305_PROKKA_02280, GCF_020097155_PROKKA_00317, GCF_005280335_PROKKA_02347, GCF_005280335_PROKKA_02631, GCF_005280335_PROKKA_01304, GCF_005280335_PROKKA_01281, GCF_005280335_PROKKA_01312, GCF_020097155_PROKKA_00625, GCF_002008305_PROKKA_01068, GCF_005280335_PROKKA_01317, GCF_003691675_PROKKA_01658, GCF_003691675_PROKKA_00319, GCF_003691675_PROKKA_02267, GCF_003691675_PROKKA_00788	GCF_005280335_PROKKA_02614, GCF_002008305_PROKKA_01386, GCF_003691675_PROKKA_01327, GCF_005280335_PROKKA_00758, GCF_005280335_PROKKA_02331, GCF_023573625_PROKKA_01539, GCF_020097155_PROKKA_01796, GCF_020097155_PROKKA_01836, GCF_020097155_PROKKA_02207
+OG0000003	N0	n1	0.4	Non-Terminal	GCF_003691675_PROKKA_01116, GCF_023573625_PROKKA_01884	GCF_023573625_PROKKA_00114, GCF_002008305_PROKKA_02280, GCF_020097155_PROKKA_00317, GCF_005280335_PROKKA_02347, GCF_005280335_PROKKA_02631, GCF_005280335_PROKKA_01304, GCF_005280335_PROKKA_01281, GCF_005280335_PROKKA_01312, GCF_020097155_PROKKA_00625, GCF_002008305_PROKKA_01068, GCF_005280335_PROKKA_01317, GCF_003691675_PROKKA_01658, GCF_003691675_PROKKA_00319, GCF_003691675_PROKKA_02267, GCF_003691675_PROKKA_00788
+OG0000003	N0	n4	0.4	Non-Terminal	GCF_002008305_PROKKA_02280, GCF_020097155_PROKKA_00317, GCF_005280335_PROKKA_02347, GCF_005280335_PROKKA_02631, GCF_005280335_PROKKA_01304, GCF_005280335_PROKKA_01281, GCF_005280335_PROKKA_01312, GCF_020097155_PROKKA_00625	GCF_002008305_PROKKA_01068, GCF_005280335_PROKKA_01317, GCF_003691675_PROKKA_01658, GCF_003691675_PROKKA_00319, GCF_003691675_PROKKA_02267, GCF_003691675_PROKKA_00788
+OG0000003	N0	n5	0.4	Non-Terminal	GCF_002008305_PROKKA_02280, GCF_020097155_PROKKA_00317, GCF_005280335_PROKKA_02347, GCF_005280335_PROKKA_02631, GCF_005280335_PROKKA_01304	GCF_005280335_PROKKA_01281, GCF_005280335_PROKKA_01312, GCF_020097155_PROKKA_00625
+OG0000003	GCF_005280335	n8	1.0	Terminal	GCF_005280335_PROKKA_02347, GCF_005280335_PROKKA_02631	GCF_005280335_PROKKA_01304
+OG0000003	GCF_005280335	n9	1.0	Terminal	GCF_005280335_PROKKA_02347	GCF_005280335_PROKKA_02631
+OG0000003	GCF_005280335	n11	1.0	Terminal	GCF_005280335_PROKKA_01281	GCF_005280335_PROKKA_01312
+OG0000003	GCF_003691675	n14	1.0	Terminal	GCF_003691675_PROKKA_01658	GCF_003691675_PROKKA_00319, GCF_003691675_PROKKA_02267, GCF_003691675_PROKKA_00788
+OG0000003	GCF_003691675	n15	1.0	Terminal	GCF_003691675_PROKKA_00319, GCF_003691675_PROKKA_02267	GCF_003691675_PROKKA_00788
+OG0000003	GCF_003691675	n16	1.0	Terminal	GCF_003691675_PROKKA_00319	GCF_003691675_PROKKA_02267
+OG0000003	N0	n17	0.2	Non-Terminal	GCF_005280335_PROKKA_02614	GCF_002008305_PROKKA_01386, GCF_003691675_PROKKA_01327, GCF_005280335_PROKKA_00758, GCF_005280335_PROKKA_02331, GCF_023573625_PROKKA_01539, GCF_020097155_PROKKA_01796, GCF_020097155_PROKKA_01836, GCF_020097155_PROKKA_02207
+OG0000003	GCF_020097155	n21	1.0	Terminal	GCF_020097155_PROKKA_01796, GCF_020097155_PROKKA_01836, GCF_020097155_PROKKA_02207	
+OG0000004	N1	n1	0.25	Non-Terminal	GCF_005280335_PROKKA_00899	GCF_005280335_PROKKA_00643, GCF_005280335_PROKKA_01506, GCF_005280335_PROKKA_00229, GCF_003691675_PROKKA_01015, GCF_002008305_PROKKA_02069, GCF_023573625_PROKKA_01547, GCF_023573625_PROKKA_01549, GCF_023573625_PROKKA_01880, GCF_002008305_PROKKA_00376, GCF_002008305_PROKKA_01393, GCF_002008305_PROKKA_02112, GCF_002008305_PROKKA_02277, GCF_003691675_PROKKA_00355, GCF_003691675_PROKKA_01125, GCF_003691675_PROKKA_01746, GCF_003691675_PROKKA_01819, GCF_003691675_PROKKA_02016, GCF_023573625_PROKKA_00116, GCF_023573625_PROKKA_01974, GCF_003691675_PROKKA_01012, GCF_005280335_PROKKA_00228, GCF_005280335_PROKKA_00895, GCF_005280335_PROKKA_02100
+OG0000004	N1	n2	0.5	Non-Terminal	GCF_005280335_PROKKA_00643, GCF_005280335_PROKKA_01506, GCF_005280335_PROKKA_00229, GCF_003691675_PROKKA_01015, GCF_002008305_PROKKA_02069, GCF_023573625_PROKKA_01547, GCF_023573625_PROKKA_01549, GCF_023573625_PROKKA_01880, GCF_002008305_PROKKA_00376, GCF_002008305_PROKKA_01393, GCF_002008305_PROKKA_02112, GCF_002008305_PROKKA_02277, GCF_003691675_PROKKA_00355, GCF_003691675_PROKKA_01125, GCF_003691675_PROKKA_01746, GCF_003691675_PROKKA_01819, GCF_003691675_PROKKA_02016, GCF_023573625_PROKKA_00116, GCF_023573625_PROKKA_01974	GCF_003691675_PROKKA_01012, GCF_005280335_PROKKA_00228, GCF_005280335_PROKKA_00895, GCF_005280335_PROKKA_02100
+OG0000004	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00643, GCF_005280335_PROKKA_01506	GCF_005280335_PROKKA_00229
+OG0000004	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_00643	GCF_005280335_PROKKA_01506
+OG0000004	N2	n6	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_01015	GCF_002008305_PROKKA_02069, GCF_023573625_PROKKA_01547, GCF_023573625_PROKKA_01549, GCF_023573625_PROKKA_01880, GCF_002008305_PROKKA_00376, GCF_002008305_PROKKA_01393, GCF_002008305_PROKKA_02112, GCF_002008305_PROKKA_02277, GCF_003691675_PROKKA_00355, GCF_003691675_PROKKA_01125, GCF_003691675_PROKKA_01746, GCF_003691675_PROKKA_01819, GCF_003691675_PROKKA_02016, GCF_023573625_PROKKA_00116, GCF_023573625_PROKKA_01974
+OG0000004	N2	n7	0.3333333333333333	Non-Terminal	GCF_002008305_PROKKA_02069	GCF_023573625_PROKKA_01547, GCF_023573625_PROKKA_01549, GCF_023573625_PROKKA_01880, GCF_002008305_PROKKA_00376, GCF_002008305_PROKKA_01393, GCF_002008305_PROKKA_02112, GCF_002008305_PROKKA_02277, GCF_003691675_PROKKA_00355, GCF_003691675_PROKKA_01125, GCF_003691675_PROKKA_01746, GCF_003691675_PROKKA_01819, GCF_003691675_PROKKA_02016, GCF_023573625_PROKKA_00116, GCF_023573625_PROKKA_01974
+OG0000004	N2	n8	0.3333333333333333	Non-Terminal	GCF_023573625_PROKKA_01547, GCF_023573625_PROKKA_01549, GCF_023573625_PROKKA_01880	GCF_002008305_PROKKA_00376, GCF_002008305_PROKKA_01393, GCF_002008305_PROKKA_02112, GCF_002008305_PROKKA_02277, GCF_003691675_PROKKA_00355, GCF_003691675_PROKKA_01125, GCF_003691675_PROKKA_01746, GCF_003691675_PROKKA_01819, GCF_003691675_PROKKA_02016, GCF_023573625_PROKKA_00116, GCF_023573625_PROKKA_01974
+OG0000004	GCF_023573625	n9	1.0	Terminal	GCF_023573625_PROKKA_01547, GCF_023573625_PROKKA_01549, GCF_023573625_PROKKA_01880	
+OG0000004	GCF_005280335	n12	1.0	Terminal	GCF_005280335_PROKKA_00228, GCF_005280335_PROKKA_00895	GCF_005280335_PROKKA_02100
+OG0000004	GCF_005280335	n13	1.0	Terminal	GCF_005280335_PROKKA_00228	GCF_005280335_PROKKA_00895
+OG0000005	N0	n0	0.4	Non-Terminal	GCF_005280335_PROKKA_01282, GCF_020097155_PROKKA_00652, GCF_020097155_PROKKA_01820	GCF_020097155_PROKKA_01361, GCF_020097155_PROKKA_00641, GCF_020097155_PROKKA_01832, GCF_020097155_PROKKA_00227, GCF_003691675_PROKKA_01778, GCF_020097155_PROKKA_00678, GCF_005280335_PROKKA_02274, GCF_020097155_PROKKA_00315, GCF_020097155_PROKKA_00645, GCF_020097155_PROKKA_00631, GCF_020097155_PROKKA_02162, GCF_020097155_PROKKA_00751, GCF_020097155_PROKKA_01794, GCF_020097155_PROKKA_01890, GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00652	GCF_020097155_PROKKA_01820
+OG0000005	N0	n3	0.2	Non-Terminal	GCF_020097155_PROKKA_01361, GCF_020097155_PROKKA_00641, GCF_020097155_PROKKA_01832	GCF_020097155_PROKKA_00227, GCF_003691675_PROKKA_01778, GCF_020097155_PROKKA_00678, GCF_005280335_PROKKA_02274, GCF_020097155_PROKKA_00315, GCF_020097155_PROKKA_00645, GCF_020097155_PROKKA_00631, GCF_020097155_PROKKA_02162, GCF_020097155_PROKKA_00751, GCF_020097155_PROKKA_01794, GCF_020097155_PROKKA_01890, GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n4	1.0	Terminal	GCF_020097155_PROKKA_01361	GCF_020097155_PROKKA_00641, GCF_020097155_PROKKA_01832
+OG0000005	GCF_020097155	n5	1.0	Terminal	GCF_020097155_PROKKA_00641	GCF_020097155_PROKKA_01832
+OG0000005	N0	n6	0.2	Non-Terminal	GCF_020097155_PROKKA_00227	GCF_003691675_PROKKA_01778, GCF_020097155_PROKKA_00678, GCF_005280335_PROKKA_02274, GCF_020097155_PROKKA_00315, GCF_020097155_PROKKA_00645, GCF_020097155_PROKKA_00631, GCF_020097155_PROKKA_02162, GCF_020097155_PROKKA_00751, GCF_020097155_PROKKA_01794, GCF_020097155_PROKKA_01890, GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	N0	n7	0.2	Non-Terminal	GCF_003691675_PROKKA_01778, GCF_020097155_PROKKA_00678	GCF_005280335_PROKKA_02274, GCF_020097155_PROKKA_00315, GCF_020097155_PROKKA_00645, GCF_020097155_PROKKA_00631, GCF_020097155_PROKKA_02162, GCF_020097155_PROKKA_00751, GCF_020097155_PROKKA_01794, GCF_020097155_PROKKA_01890, GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n10	1.0	Terminal	GCF_020097155_PROKKA_00315, GCF_020097155_PROKKA_00645	GCF_020097155_PROKKA_00631, GCF_020097155_PROKKA_02162, GCF_020097155_PROKKA_00751, GCF_020097155_PROKKA_01794, GCF_020097155_PROKKA_01890, GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n11	1.0	Terminal	GCF_020097155_PROKKA_00315	GCF_020097155_PROKKA_00645
+OG0000005	GCF_020097155	n12	1.0	Terminal	GCF_020097155_PROKKA_00631, GCF_020097155_PROKKA_02162	GCF_020097155_PROKKA_00751, GCF_020097155_PROKKA_01794, GCF_020097155_PROKKA_01890, GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n13	1.0	Terminal	GCF_020097155_PROKKA_00631	GCF_020097155_PROKKA_02162
+OG0000005	GCF_020097155	n14	1.0	Terminal	GCF_020097155_PROKKA_00751, GCF_020097155_PROKKA_01794	GCF_020097155_PROKKA_01890, GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n15	1.0	Terminal	GCF_020097155_PROKKA_00751	GCF_020097155_PROKKA_01794
+OG0000005	GCF_020097155	n16	1.0	Terminal	GCF_020097155_PROKKA_01890	GCF_020097155_PROKKA_00627, GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n17	1.0	Terminal	GCF_020097155_PROKKA_00627	GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206, GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n18	1.0	Terminal	GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835, GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206	GCF_020097155_PROKKA_00312
+OG0000005	GCF_020097155	n19	1.0	Terminal	GCF_020097155_PROKKA_00226, GCF_020097155_PROKKA_01835	GCF_020097155_PROKKA_00448, GCF_020097155_PROKKA_02206
+OG0000005	GCF_020097155	n20	1.0	Terminal	GCF_020097155_PROKKA_00226	GCF_020097155_PROKKA_01835
+OG0000005	GCF_020097155	n21	1.0	Terminal	GCF_020097155_PROKKA_00448	GCF_020097155_PROKKA_02206
+OG0000006	N2	n1	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_01011	GCF_003691675_PROKKA_01114, GCF_002008305_PROKKA_00157, GCF_002008305_PROKKA_01034, GCF_002008305_PROKKA_01292, GCF_002008305_PROKKA_02077, GCF_003691675_PROKKA_01104, GCF_023573625_PROKKA_01250, GCF_023573625_PROKKA_01339, GCF_023573625_PROKKA_00588, GCF_023573625_PROKKA_02205, GCF_002008305_PROKKA_01384, GCF_003691675_PROKKA_02023, GCF_023573625_PROKKA_01885, GCF_023573625_PROKKA_00590, GCF_003691675_PROKKA_01112
+OG0000006	N2	n2	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_01114	GCF_002008305_PROKKA_00157, GCF_002008305_PROKKA_01034, GCF_002008305_PROKKA_01292, GCF_002008305_PROKKA_02077, GCF_003691675_PROKKA_01104, GCF_023573625_PROKKA_01250, GCF_023573625_PROKKA_01339, GCF_023573625_PROKKA_00588, GCF_023573625_PROKKA_02205, GCF_002008305_PROKKA_01384, GCF_003691675_PROKKA_02023, GCF_023573625_PROKKA_01885, GCF_023573625_PROKKA_00590, GCF_003691675_PROKKA_01112
+OG0000006	N2	n3	1.0	Non-Terminal	GCF_002008305_PROKKA_00157, GCF_002008305_PROKKA_01034, GCF_002008305_PROKKA_01292, GCF_002008305_PROKKA_02077, GCF_003691675_PROKKA_01104, GCF_023573625_PROKKA_01250	GCF_023573625_PROKKA_01339, GCF_023573625_PROKKA_00588, GCF_023573625_PROKKA_02205, GCF_002008305_PROKKA_01384, GCF_003691675_PROKKA_02023, GCF_023573625_PROKKA_01885, GCF_023573625_PROKKA_00590, GCF_003691675_PROKKA_01112
+OG0000006	N2	n5	0.3333333333333333	Non-Terminal	GCF_023573625_PROKKA_01339	GCF_023573625_PROKKA_00588, GCF_023573625_PROKKA_02205, GCF_002008305_PROKKA_01384, GCF_003691675_PROKKA_02023, GCF_023573625_PROKKA_01885, GCF_023573625_PROKKA_00590, GCF_003691675_PROKKA_01112
+OG0000006	N2	n6	0.3333333333333333	Non-Terminal	GCF_023573625_PROKKA_00588, GCF_023573625_PROKKA_02205	GCF_002008305_PROKKA_01384, GCF_003691675_PROKKA_02023, GCF_023573625_PROKKA_01885, GCF_023573625_PROKKA_00590, GCF_003691675_PROKKA_01112
+OG0000006	GCF_023573625	n7	1.0	Terminal	GCF_023573625_PROKKA_00588	GCF_023573625_PROKKA_02205
+OG0000006	N2	n8	0.6666666666666666	Non-Terminal	GCF_002008305_PROKKA_01384, GCF_003691675_PROKKA_02023, GCF_023573625_PROKKA_01885	GCF_023573625_PROKKA_00590, GCF_003691675_PROKKA_01112
+OG0000007	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_01033	GCF_002008305_PROKKA_01383
+OG0000008	N2	n0	0.6666666666666666	Non-Terminal	GCF_002008305_PROKKA_02227, GCF_023573625_PROKKA_01016, GCF_023573625_PROKKA_01158	GCF_003691675_PROKKA_00092, GCF_003691675_PROKKA_00343, GCF_003691675_PROKKA_01013, GCF_003691675_PROKKA_01394, GCF_003691675_PROKKA_02284, GCF_023573625_PROKKA_00606, GCF_023573625_PROKKA_01349, GCF_023573625_PROKKA_02164, GCF_002008305_PROKKA_01398, GCF_002008305_PROKKA_01502, GCF_002008305_PROKKA_02225, GCF_002008305_PROKKA_00711
+OG0000008	GCF_023573625	n2	1.0	Terminal	GCF_023573625_PROKKA_01016	GCF_023573625_PROKKA_01158
+OG0000008	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_01398, GCF_002008305_PROKKA_01502, GCF_002008305_PROKKA_02225	GCF_002008305_PROKKA_00711
+OG0000008	GCF_002008305	n5	1.0	Terminal	GCF_002008305_PROKKA_01398	GCF_002008305_PROKKA_01502, GCF_002008305_PROKKA_02225
+OG0000008	GCF_002008305	n6	1.0	Terminal	GCF_002008305_PROKKA_01502	GCF_002008305_PROKKA_02225
+OG0000009	N2	n0	0.3333333333333333	Non-Terminal	GCF_002008305_PROKKA_00712, GCF_002008305_PROKKA_01400, GCF_003691675_PROKKA_00091, GCF_003691675_PROKKA_00344, GCF_003691675_PROKKA_01014, GCF_003691675_PROKKA_01393, GCF_003691675_PROKKA_02283, GCF_023573625_PROKKA_00607, GCF_023573625_PROKKA_01017, GCF_023573625_PROKKA_01157, GCF_023573625_PROKKA_01350, GCF_023573625_PROKKA_02163	GCF_002008305_PROKKA_01503, GCF_002008305_PROKKA_02228
+OG0000009	GCF_002008305	n2	1.0	Terminal	GCF_002008305_PROKKA_01503	GCF_002008305_PROKKA_02228
+OG0000010	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00630, GCF_020097155_PROKKA_00638, GCF_020097155_PROKKA_00839	
+OG0000010	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_01092	GCF_005280335_PROKKA_00508, GCF_005280335_PROKKA_00108, GCF_005280335_PROKKA_00509, GCF_005280335_PROKKA_01091
+OG0000010	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00508	GCF_005280335_PROKKA_00108, GCF_005280335_PROKKA_00509, GCF_005280335_PROKKA_01091
+OG0000010	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_00108	GCF_005280335_PROKKA_00509, GCF_005280335_PROKKA_01091
+OG0000010	GCF_005280335	n6	1.0	Terminal	GCF_005280335_PROKKA_00509	GCF_005280335_PROKKA_01091
+OG0000010	GCF_002008305	n9	1.0	Terminal	GCF_002008305_PROKKA_00845	GCF_002008305_PROKKA_00454, GCF_002008305_PROKKA_01392
+OG0000010	GCF_002008305	n10	1.0	Terminal	GCF_002008305_PROKKA_00454	GCF_002008305_PROKKA_01392
+OG0000011	N1	n0	1.0	Non-Terminal	GCF_023573625_PROKKA_02002, GCF_003691675_PROKKA_00339, GCF_003691675_PROKKA_01779, GCF_002008305_PROKKA_02074, GCF_002008305_PROKKA_00616, GCF_005280335_PROKKA_00719	GCF_005280335_PROKKA_00727, GCF_003691675_PROKKA_00350, GCF_003691675_PROKKA_00789, GCF_005280335_PROKKA_02366, GCF_023573625_PROKKA_02005, GCF_002008305_PROKKA_00609, GCF_003691675_PROKKA_01769
+OG0000011	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_02074	GCF_002008305_PROKKA_00616
+OG0000011	N1	n5	0.5	Non-Terminal	GCF_005280335_PROKKA_00727, GCF_003691675_PROKKA_00350, GCF_003691675_PROKKA_00789	GCF_005280335_PROKKA_02366, GCF_023573625_PROKKA_02005, GCF_002008305_PROKKA_00609, GCF_003691675_PROKKA_01769
+OG0000011	GCF_003691675	n7	1.0	Terminal	GCF_003691675_PROKKA_00350	GCF_003691675_PROKKA_00789
+OG0000012	N1	n1	0.25	Non-Terminal	GCF_002008305_PROKKA_02063	GCF_002008305_PROKKA_01075, GCF_005280335_PROKKA_00722, GCF_003691675_PROKKA_00338, GCF_003691675_PROKKA_00345, GCF_003691675_PROKKA_00794, GCF_005280335_PROKKA_00720, GCF_023573625_PROKKA_01024, GCF_002008305_PROKKA_00159, GCF_002008305_PROKKA_00156, GCF_003691675_PROKKA_00297
+OG0000012	N1	n2	0.75	Non-Terminal	GCF_002008305_PROKKA_01075, GCF_005280335_PROKKA_00722, GCF_003691675_PROKKA_00338, GCF_003691675_PROKKA_00345, GCF_003691675_PROKKA_00794	GCF_005280335_PROKKA_00720, GCF_023573625_PROKKA_01024, GCF_002008305_PROKKA_00159, GCF_002008305_PROKKA_00156, GCF_003691675_PROKKA_00297
+OG0000012	GCF_003691675	n5	1.0	Terminal	GCF_003691675_PROKKA_00338, GCF_003691675_PROKKA_00345, GCF_003691675_PROKKA_00794	
+OG0000012	GCF_002008305	n9	1.0	Terminal	GCF_002008305_PROKKA_00159	GCF_002008305_PROKKA_00156
+OG0000013	N1	n1	0.5	Non-Terminal	GCF_023573625_PROKKA_01544, GCF_003691675_PROKKA_01765, GCF_005280335_PROKKA_00706, GCF_005280335_PROKKA_02276, GCF_005280335_PROKKA_02636, GCF_005280335_PROKKA_02496, GCF_005280335_PROKKA_02495, GCF_005280335_PROKKA_02615	GCF_003691675_PROKKA_00341, GCF_023573625_PROKKA_00898
+OG0000013	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00706	GCF_005280335_PROKKA_02276, GCF_005280335_PROKKA_02636, GCF_005280335_PROKKA_02496, GCF_005280335_PROKKA_02495, GCF_005280335_PROKKA_02615
+OG0000013	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_02276, GCF_005280335_PROKKA_02636	GCF_005280335_PROKKA_02496, GCF_005280335_PROKKA_02495, GCF_005280335_PROKKA_02615
+OG0000013	GCF_005280335	n6	1.0	Terminal	GCF_005280335_PROKKA_02276	GCF_005280335_PROKKA_02636
+OG0000013	GCF_005280335	n7	1.0	Terminal	GCF_005280335_PROKKA_02496	GCF_005280335_PROKKA_02495, GCF_005280335_PROKKA_02615
+OG0000013	GCF_005280335	n8	1.0	Terminal	GCF_005280335_PROKKA_02495	GCF_005280335_PROKKA_02615
+OG0000014	N2	n3	0.3333333333333333	Non-Terminal	GCF_002008305_PROKKA_02060	GCF_003691675_PROKKA_00298, GCF_002008305_PROKKA_00160, GCF_002008305_PROKKA_01074, GCF_003691675_PROKKA_00337, GCF_003691675_PROKKA_00793, GCF_003691675_PROKKA_00346
+OG0000014	N2	n4	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_00298	GCF_002008305_PROKKA_00160, GCF_002008305_PROKKA_01074, GCF_003691675_PROKKA_00337, GCF_003691675_PROKKA_00793, GCF_003691675_PROKKA_00346
+OG0000014	GCF_003691675	n6	1.0	Terminal	GCF_003691675_PROKKA_00337, GCF_003691675_PROKKA_00793	GCF_003691675_PROKKA_00346
+OG0000014	GCF_003691675	n7	1.0	Terminal	GCF_003691675_PROKKA_00337	GCF_003691675_PROKKA_00793
+OG0000015	N0	n0	1.0	Non-Terminal	GCF_020097155_PROKKA_01149, GCF_005280335_PROKKA_01238, GCF_002008305_PROKKA_01656, GCF_003691675_PROKKA_01361, GCF_023573625_PROKKA_01586	GCF_020097155_PROKKA_02465, GCF_005280335_PROKKA_02606, GCF_002008305_PROKKA_00355, GCF_003691675_PROKKA_00071, GCF_023573625_PROKKA_00362
+OG0000016	N0	n0	1.0	Non-Terminal	GCF_002008305_PROKKA_01771, GCF_003691675_PROKKA_01478, GCF_023573625_PROKKA_01700, GCF_005280335_PROKKA_01106, GCF_020097155_PROKKA_01032	GCF_003691675_PROKKA_00706, GCF_023573625_PROKKA_00935, GCF_005280335_PROKKA_01897, GCF_002008305_PROKKA_00992, GCF_020097155_PROKKA_01844
+OG0000017	N0	n0	0.8	Non-Terminal	GCF_020097155_PROKKA_00880, GCF_002008305_PROKKA_01915, GCF_003691675_PROKKA_01611, GCF_023573625_PROKKA_01835	GCF_020097155_PROKKA_02288, GCF_005280335_PROKKA_02407, GCF_023573625_PROKKA_00545, GCF_002008305_PROKKA_00542, GCF_003691675_PROKKA_00267
+OG0000018	N2	n2	0.3333333333333333	Non-Terminal	GCF_002008305_PROKKA_01845	GCF_002008305_PROKKA_01658, GCF_003691675_PROKKA_01363, GCF_023573625_PROKKA_01588, GCF_002008305_PROKKA_01559, GCF_003691675_PROKKA_01269, GCF_023573625_PROKKA_01486
+OG0000018	N2	n3	1.0	Non-Terminal: STRIDE	GCF_002008305_PROKKA_01658, GCF_003691675_PROKKA_01363, GCF_023573625_PROKKA_01588	GCF_002008305_PROKKA_01559, GCF_003691675_PROKKA_01269, GCF_023573625_PROKKA_01486
+OG0000019	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_02497, GCF_005280335_PROKKA_02616	GCF_005280335_PROKKA_02275, GCF_005280335_PROKKA_02634
+OG0000019	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_02497	GCF_005280335_PROKKA_02616
+OG0000019	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02275	GCF_005280335_PROKKA_02634
+OG0000019	N3	n5	1.0	Non-Terminal	GCF_003691675_PROKKA_00342, GCF_023573625_PROKKA_01543	GCF_023573625_PROKKA_00899, GCF_003691675_PROKKA_01766
+OG0000020	N1	n1	0.75	Non-Terminal	GCF_005280335_PROKKA_01211, GCF_003691675_PROKKA_00245, GCF_002008305_PROKKA_00524, GCF_023573625_PROKKA_00524	GCF_005280335_PROKKA_02417, GCF_003691675_PROKKA_00256, GCF_023573625_PROKKA_00535
+OG0000021	N2	n2	0.6666666666666666	Non-Terminal	GCF_003691675_PROKKA_00295, GCF_023573625_PROKKA_00572, GCF_002008305_PROKKA_00571	GCF_003691675_PROKKA_00294, GCF_002008305_PROKKA_00570
+OG0000021	GCF_005280335	n6	1.0	Terminal	GCF_005280335_PROKKA_02375	GCF_005280335_PROKKA_02374
+OG0000022	N0	n0	0.6	Non-Terminal	GCF_020097155_PROKKA_00711, GCF_002008305_PROKKA_01289, GCF_003691675_PROKKA_01008, GCF_023573625_PROKKA_01247	GCF_002008305_PROKKA_00633, GCF_005280335_PROKKA_00405, GCF_020097155_PROKKA_02196, GCF_023573625_PROKKA_00598
+OG0000023	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_01865, GCF_020097155_PROKKA_00440, GCF_020097155_PROKKA_00650	GCF_020097155_PROKKA_00454
+OG0000023	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_01865	GCF_020097155_PROKKA_00440, GCF_020097155_PROKKA_00650
+OG0000023	GCF_020097155	n4	1.0	Terminal	GCF_020097155_PROKKA_00440	GCF_020097155_PROKKA_00650
+OG0000024	N0	n0	0.6	Non-Terminal	GCF_020097155_PROKKA_02437, GCF_005280335_PROKKA_01839, GCF_023573625_PROKKA_00587	GCF_005280335_PROKKA_00439, GCF_020097155_PROKKA_00392, GCF_002008305_PROKKA_02297, GCF_003691675_PROKKA_01990, GCF_023573625_PROKKA_02238
+OG0000025	N0	n0	0.4	Non-Terminal	GCF_020097155_PROKKA_00670, GCF_023573625_PROKKA_02014	GCF_020097155_PROKKA_00617, GCF_002008305_PROKKA_00099, GCF_003691675_PROKKA_02112, GCF_023573625_PROKKA_00094, GCF_005280335_PROKKA_00292
+OG0000026	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00186	GCF_020097155_PROKKA_00187, GCF_020097155_PROKKA_02180
+OG0000026	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00187	GCF_020097155_PROKKA_02180
+OG0000028	N2	n1	0.6666666666666666	Non-Terminal	GCF_002008305_PROKKA_01072, GCF_003691675_PROKKA_00335, GCF_003691675_PROKKA_00348, GCF_023573625_PROKKA_01021	GCF_002008305_PROKKA_00162, GCF_003691675_PROKKA_00791
+OG0000029	GCF_003691675	n3	1.0	Terminal	GCF_003691675_PROKKA_00349, GCF_003691675_PROKKA_00334	GCF_003691675_PROKKA_00790
+OG0000029	GCF_003691675	n4	1.0	Terminal	GCF_003691675_PROKKA_00349	GCF_003691675_PROKKA_00334
+OG0000029	GCF_002008305	n5	1.0	Terminal	GCF_002008305_PROKKA_00163	GCF_002008305_PROKKA_01071
+OG0000030	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_02334	GCF_005280335_PROKKA_00171, GCF_005280335_PROKKA_00191, GCF_005280335_PROKKA_02217
+OG0000030	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00171	GCF_005280335_PROKKA_00191, GCF_005280335_PROKKA_02217
+OG0000030	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00191	GCF_005280335_PROKKA_02217
+OG0000031	N0	n0	0.4	Non-Terminal	GCF_002008305_PROKKA_00172, GCF_020097155_PROKKA_02230	GCF_020097155_PROKKA_01399, GCF_005280335_PROKKA_01488, GCF_002008305_PROKKA_01408, GCF_003691675_PROKKA_01138, GCF_023573625_PROKKA_01358
+OG0000032	GCF_003691675	n4	1.0	Terminal	GCF_003691675_PROKKA_00096, GCF_003691675_PROKKA_00100	GCF_003691675_PROKKA_02257
+OG0000032	GCF_003691675	n5	1.0	Terminal	GCF_003691675_PROKKA_00096	GCF_003691675_PROKKA_00100
+OG0000033	N0	n0	0.4	Non-Terminal	GCF_005280335_PROKKA_00590, GCF_020097155_PROKKA_00524	GCF_020097155_PROKKA_00077, GCF_005280335_PROKKA_00109, GCF_003691675_PROKKA_02273, GCF_002008305_PROKKA_00260, GCF_023573625_PROKKA_00258
+OG0000034	N2	n3	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_00340	GCF_002008305_PROKKA_00617, GCF_002008305_PROKKA_02075, GCF_003691675_PROKKA_01780
+OG0000034	GCF_002008305	n5	1.0	Terminal	GCF_002008305_PROKKA_00617	GCF_002008305_PROKKA_02075
+OG0000035	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00410	GCF_005280335_PROKKA_00389, GCF_005280335_PROKKA_00393
+OG0000035	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00389	GCF_005280335_PROKKA_00393
+OG0000036	N0	n0	0.4	Non-Terminal	GCF_020097155_PROKKA_00451, GCF_005280335_PROKKA_01253, GCF_005280335_PROKKA_01330	GCF_005280335_PROKKA_00403, GCF_020097155_PROKKA_02198, GCF_002008305_PROKKA_00631, GCF_023573625_PROKKA_00600
+OG0000036	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_01253	GCF_005280335_PROKKA_01330
+OG0000037	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_02076	GCF_020097155_PROKKA_00685, GCF_020097155_PROKKA_00686
+OG0000037	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00685	GCF_020097155_PROKKA_00686
+OG0000038	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_01778	GCF_002008305_PROKKA_00836, GCF_002008305_PROKKA_00837
+OG0000038	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_00836	GCF_002008305_PROKKA_00837
+OG0000039	N2	n3	0.6666666666666666	Non-Terminal	GCF_002008305_PROKKA_00894, GCF_003691675_PROKKA_00616	GCF_002008305_PROKKA_00884, GCF_003691675_PROKKA_00606
+OG0000040	GCF_023573625	n4	1.0	Terminal	GCF_023573625_PROKKA_00959	GCF_023573625_PROKKA_00958
+OG0000040	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_00822	GCF_005280335_PROKKA_01873
+OG0000041	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00314	GCF_020097155_PROKKA_01606
+OG0000041	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_01707	GCF_005280335_PROKKA_01708
+OG0000042	N2	n2	0.6666666666666666	Non-Terminal	GCF_002008305_PROKKA_01288, GCF_003691675_PROKKA_01007, GCF_023573625_PROKKA_01246	GCF_002008305_PROKKA_01627, GCF_023573625_PROKKA_01556
+OG0000043	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00325	GCF_020097155_PROKKA_00648, GCF_020097155_PROKKA_02216
+OG0000043	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00648	GCF_020097155_PROKKA_02216
+OG0000044	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00649, GCF_020097155_PROKKA_02217	GCF_020097155_PROKKA_00326
+OG0000044	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00649	GCF_020097155_PROKKA_02217
+OG0000045	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01240	GCF_020097155_PROKKA_01828, GCF_020097155_PROKKA_00714, GCF_020097155_PROKKA_00643
+OG0000045	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_01828	GCF_020097155_PROKKA_00714, GCF_020097155_PROKKA_00643
+OG0000045	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00714	GCF_020097155_PROKKA_00643
+OG0000046	N0	n0	0.4	Non-Terminal	GCF_020097155_PROKKA_00743, GCF_002008305_PROKKA_01791, GCF_005280335_PROKKA_01085	GCF_020097155_PROKKA_00733, GCF_003691675_PROKKA_01753, GCF_002008305_PROKKA_02047, GCF_023573625_PROKKA_01981
+OG0000047	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00397, GCF_005280335_PROKKA_02641	GCF_005280335_PROKKA_01068
+OG0000047	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_00397	GCF_005280335_PROKKA_02641
+OG0000048	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00398, GCF_005280335_PROKKA_02643	GCF_005280335_PROKKA_01066
+OG0000048	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_00398	GCF_005280335_PROKKA_02643
+OG0000049	GCF_023573625	n4	1.0	Terminal	GCF_023573625_PROKKA_00173, GCF_023573625_PROKKA_00174	GCF_023573625_PROKKA_01943
+OG0000049	GCF_023573625	n5	1.0	Terminal	GCF_023573625_PROKKA_00173	GCF_023573625_PROKKA_00174
+OG0000050	N0	n0	0.4	Non-Terminal	GCF_005280335_PROKKA_01308, GCF_020097155_PROKKA_02237	GCF_020097155_PROKKA_00662, GCF_005280335_PROKKA_00694, GCF_003691675_PROKKA_01794, GCF_023573625_PROKKA_02028, GCF_002008305_PROKKA_02089
+OG0000051	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00599, GCF_020097155_PROKKA_02101	GCF_020097155_PROKKA_00600
+OG0000051	GCF_020097155	n4	1.0	Terminal	GCF_020097155_PROKKA_00599	GCF_020097155_PROKKA_02101
+OG0000052	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00589, GCF_005280335_PROKKA_02580	GCF_005280335_PROKKA_00598
+OG0000052	GCF_005280335	n5	1.0	Terminal	GCF_005280335_PROKKA_00589	GCF_005280335_PROKKA_02580
+OG0000053	N0	n0	0.6	Non-Terminal	GCF_020097155_PROKKA_00418, GCF_002008305_PROKKA_02261, GCF_023573625_PROKKA_02192	GCF_020097155_PROKKA_00422, GCF_003691675_PROKKA_01948, GCF_002008305_PROKKA_02246, GCF_023573625_PROKKA_02178
+OG0000054	N1	n3	0.5	Non-Terminal	GCF_002008305_PROKKA_02275, GCF_005280335_PROKKA_00493	GCF_005280335_PROKKA_00488, GCF_002008305_PROKKA_02253
+OG0000055	N0	n1	0.4	Non-Terminal	GCF_020097155_PROKKA_00792, GCF_003691675_PROKKA_01696, GCF_005280335_PROKKA_00855	GCF_005280335_PROKKA_01010, GCF_020097155_PROKKA_00943, GCF_020097155_PROKKA_00870
+OG0000055	GCF_020097155	n5	1.0	Terminal	GCF_020097155_PROKKA_00943	GCF_020097155_PROKKA_00870
+OG0000056	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00370	GCF_005280335_PROKKA_00371
+OG0000057	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_00568	GCF_002008305_PROKKA_00037, GCF_002008305_PROKKA_02274
+OG0000057	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_00037	GCF_002008305_PROKKA_02274
+OG0000058	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01608	GCF_005280335_PROKKA_00354
+OG0000059	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00293	GCF_020097155_PROKKA_00284
+OG0000060	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00332	GCF_005280335_PROKKA_00201
+OG0000061	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00266	GCF_020097155_PROKKA_00684
+OG0000062	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02338	GCF_005280335_PROKKA_00317
+OG0000063	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00038	GCF_005280335_PROKKA_00285
+OG0000064	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00088	GCF_005280335_PROKKA_00265
+OG0000065	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_00175	GCF_002008305_PROKKA_00854
+OG0000066	GCF_003691675	n4	1.0	Terminal	GCF_003691675_PROKKA_02194	GCF_003691675_PROKKA_02026
+OG0000067	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00130	GCF_020097155_PROKKA_00132
+OG0000068	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_02206	GCF_005280335_PROKKA_00167
+OG0000069	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00086	GCF_005280335_PROKKA_00159
+OG0000070	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00588	GCF_005280335_PROKKA_00157
+OG0000071	N3	n3	0.5	Non-Terminal	GCF_003691675_PROKKA_00102	GCF_003691675_PROKKA_02249, GCF_023573625_PROKKA_00237
+OG0000072	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00088	GCF_020097155_PROKKA_02472
+OG0000073	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00079	GCF_020097155_PROKKA_00526
+OG0000074	N3	n3	0.5	Non-Terminal	GCF_003691675_PROKKA_00203	GCF_003691675_PROKKA_02294, GCF_023573625_PROKKA_00278
+OG0000075	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00057	GCF_020097155_PROKKA_00450
+OG0000076	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_01958	GCF_002008305_PROKKA_00287
+OG0000077	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00035	GCF_020097155_PROKKA_01222
+OG0000078	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00654	GCF_020097155_PROKKA_00023
+OG0000079	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00015	GCF_020097155_PROKKA_00687
+OG0000080	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_01252	GCF_005280335_PROKKA_02602
+OG0000081	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00193	GCF_005280335_PROKKA_02595
+OG0000082	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_02444	GCF_020097155_PROKKA_01756
+OG0000083	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02646	GCF_005280335_PROKKA_02547
+OG0000084	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02542	GCF_005280335_PROKKA_02541
+OG0000085	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02535	GCF_005280335_PROKKA_02534
+OG0000086	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00683	GCF_020097155_PROKKA_02380
+OG0000087	GCF_023573625	n4	1.0	Terminal	GCF_023573625_PROKKA_01553	GCF_023573625_PROKKA_00488
+OG0000088	N1	n3	0.25	Non-Terminal	GCF_005280335_PROKKA_01221	GCF_005280335_PROKKA_02452, GCF_023573625_PROKKA_00494
+OG0000089	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01218	GCF_005280335_PROKKA_02441
+OG0000090	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_02428	GCF_005280335_PROKKA_01219
+OG0000091	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02400	GCF_005280335_PROKKA_02399
+OG0000092	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00640	GCF_005280335_PROKKA_02391
+OG0000093	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_00604	GCF_002008305_PROKKA_02174
+OG0000094	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00399	GCF_005280335_PROKKA_02642
+OG0000095	N3	n3	0.5	Non-Terminal	GCF_003691675_PROKKA_00327, GCF_023573625_PROKKA_02008	GCF_003691675_PROKKA_01771
+OG0000096	GCF_003691675	n3	1.0	Terminal	GCF_003691675_PROKKA_01774	GCF_003691675_PROKKA_00326
+OG0000096	GCF_020097155	n4	1.0	Terminal	GCF_020097155_PROKKA_00544	GCF_020097155_PROKKA_00702
+OG0000097	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_02211	GCF_020097155_PROKKA_00689, GCF_020097155_PROKKA_02215
+OG0000097	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00689	GCF_020097155_PROKKA_02215
+OG0000098	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00392	GCF_005280335_PROKKA_00411
+OG0000099	N0	n2	0.2	Non-Terminal	GCF_005280335_PROKKA_00402, GCF_020097155_PROKKA_02199	GCF_020097155_PROKKA_00452, GCF_020097155_PROKKA_01060
+OG0000099	GCF_020097155	n4	1.0	Terminal	GCF_020097155_PROKKA_00452	GCF_020097155_PROKKA_01060
+OG0000100	N0	n2	0.2	Non-Terminal	GCF_020097155_PROKKA_00584, GCF_023573625_PROKKA_00614	GCF_005280335_PROKKA_02319, GCF_020097155_PROKKA_02178
+OG0000101	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_00841	GCF_002008305_PROKKA_00650
+OG0000102	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00162	GCF_005280335_PROKKA_02307
+OG0000103	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02262	GCF_005280335_PROKKA_02263
+OG0000104	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00342	GCF_020097155_PROKKA_02098
+OG0000105	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_00748	GCF_002008305_PROKKA_00747
+OG0000106	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00528	GCF_020097155_PROKKA_02063
+OG0000107	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02161	GCF_005280335_PROKKA_00806
+OG0000108	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_00838	GCF_002008305_PROKKA_01065
+OG0000109	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_02050	GCF_005280335_PROKKA_02052
+OG0000110	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00709	GCF_020097155_PROKKA_01871
+OG0000111	N1	n3	0.25	Non-Terminal	GCF_005280335_PROKKA_01817	GCF_005280335_PROKKA_01896, GCF_003691675_PROKKA_00707
+OG0000112	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01877	GCF_005280335_PROKKA_01876
+OG0000113	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00185	GCF_005280335_PROKKA_01852
+OG0000114	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00187	GCF_005280335_PROKKA_01854
+OG0000115	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00186	GCF_005280335_PROKKA_01853
+OG0000116	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00331	GCF_005280335_PROKKA_00544
+OG0000117	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_01792	GCF_005280335_PROKKA_01793
+OG0000118	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_01788	GCF_005280335_PROKKA_01787
+OG0000119	GCF_003691675	n4	1.0	Terminal	GCF_003691675_PROKKA_00373	GCF_003691675_PROKKA_00836
+OG0000120	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01775	GCF_005280335_PROKKA_00163
+OG0000121	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01745	GCF_005280335_PROKKA_00771
+OG0000122	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_01634	GCF_020097155_PROKKA_00545
+OG0000123	GCF_023573625	n3	1.0	Terminal	GCF_023573625_PROKKA_01882	GCF_023573625_PROKKA_01230
+OG0000124	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_02080	GCF_020097155_PROKKA_01496
+OG0000125	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00131	GCF_020097155_PROKKA_01453
+OG0000126	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01415	GCF_020097155_PROKKA_01447
+OG0000127	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_01953	GCF_002008305_PROKKA_01369
+OG0000128	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01366	GCF_020097155_PROKKA_02442
+OG0000129	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_01775	GCF_020097155_PROKKA_01353
+OG0000130	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00286	GCF_020097155_PROKKA_01277
+OG0000131	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01267	GCF_020097155_PROKKA_01296
+OG0000132	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02268	GCF_005280335_PROKKA_01363
+OG0000133	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02577	GCF_005280335_PROKKA_01355
+OG0000134	N0	n2	0.2	Non-Terminal	GCF_020097155_PROKKA_01235	GCF_005280335_PROKKA_01342, GCF_020097155_PROKKA_01767
+OG0000135	GCF_003691675	n4	1.0	Terminal	GCF_003691675_PROKKA_01292	GCF_003691675_PROKKA_01293
+OG0000136	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_02249	GCF_002008305_PROKKA_01584
+OG0000137	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_02251	GCF_002008305_PROKKA_01585
+OG0000138	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01201	GCF_020097155_PROKKA_00271, GCF_020097155_PROKKA_01824
+OG0000138	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00271	GCF_020097155_PROKKA_01824
+OG0000139	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_01275	GCF_005280335_PROKKA_01290
+OG0000140	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_01182	GCF_020097155_PROKKA_00781
+OG0000141	N0	n3	0.2	Non-Terminal	GCF_020097155_PROKKA_01210, GCF_003691675_PROKKA_01341	GCF_020097155_PROKKA_01168
+OG0000142	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01209	GCF_005280335_PROKKA_01197
+OG0000143	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00038	GCF_020097155_PROKKA_01121
+OG0000144	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01022	GCF_020097155_PROKKA_01806
+OG0000145	N2	n3	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_01757, GCF_002008305_PROKKA_02051	GCF_002008305_PROKKA_01790
+OG0000146	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_02050	GCF_002008305_PROKKA_01795
+OG0000147	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_02644	GCF_005280335_PROKKA_01065
+OG0000148	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_01038	GCF_005280335_PROKKA_00744, GCF_005280335_PROKKA_02335
+OG0000148	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00744	GCF_005280335_PROKKA_02335
+OG0000149	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01331	GCF_005280335_PROKKA_01024
+OG0000150	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01058	GCF_005280335_PROKKA_01016
+OG0000151	N1	n3	0.25	Non-Terminal	GCF_005280335_PROKKA_00939	GCF_005280335_PROKKA_00786, GCF_002008305_PROKKA_01921
+OG0000152	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00854	GCF_020097155_PROKKA_02134
+OG0000153	N2	n3	0.3333333333333333	Non-Terminal	GCF_002008305_PROKKA_01976, GCF_023573625_PROKKA_01901	GCF_002008305_PROKKA_01975
+OG0000154	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00810	GCF_020097155_PROKKA_00823
+OG0000155	N0	n2	0.2	Non-Terminal	GCF_020097155_PROKKA_00808	GCF_005280335_PROKKA_00872, GCF_020097155_PROKKA_00818
+OG0000156	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00129	GCF_005280335_PROKKA_00826
+OG0000157	N2	n3	0.3333333333333333	Non-Terminal	GCF_003691675_PROKKA_00095	GCF_003691675_PROKKA_01727, GCF_002008305_PROKKA_02018
+OG0000158	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_02031	GCF_002008305_PROKKA_02029
+OG0000159	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00560	GCF_005280335_PROKKA_00743
+OG0000160	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00740	GCF_005280335_PROKKA_00736, GCF_005280335_PROKKA_00741
+OG0000160	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00736	GCF_005280335_PROKKA_00741
+OG0000161	N0	n2	0.2	Non-Terminal	GCF_005280335_PROKKA_00705, GCF_020097155_PROKKA_00619	GCF_002008305_PROKKA_02079, GCF_020097155_PROKKA_00615
+OG0000162	N0	n0	0.4	Non-Terminal	GCF_020097155_PROKKA_00555, GCF_002008305_PROKKA_02093, GCF_003691675_PROKKA_01801	GCF_003691675_PROKKA_01800, GCF_005280335_PROKKA_00685, GCF_020097155_PROKKA_00601
+OG0000163	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01500	GCF_005280335_PROKKA_00681
+OG0000164	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00575	GCF_020097155_PROKKA_00718
+OG0000165	GCF_003691675	n4	1.0	Terminal	GCF_003691675_PROKKA_01876	GCF_003691675_PROKKA_01875
+OG0000166	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00510	GCF_020097155_PROKKA_01906
+OG0000167	N2	n3	0.3333333333333333	Non-Terminal	GCF_023573625_PROKKA_00166	GCF_002008305_PROKKA_02184, GCF_023573625_PROKKA_02129
+OG0000168	GCF_002008305	n4	1.0	Terminal	GCF_002008305_PROKKA_02252	GCF_002008305_PROKKA_02276
+OG0000169	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00641	GCF_005280335_PROKKA_00469
+OG0000170	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00739	GCF_005280335_PROKKA_00434
+OG0000171	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_01948	GCF_005280335_PROKKA_00432
+OG0000172	N0	n2	0.2	Non-Terminal	GCF_005280335_PROKKA_01501, GCF_020097155_PROKKA_00694, GCF_020097155_PROKKA_00288	GCF_020097155_PROKKA_00347
+OG0000172	GCF_020097155	n4	1.0	Terminal	GCF_020097155_PROKKA_00694	GCF_020097155_PROKKA_00288
+OG0000173	N0	n0	0.4	Non-Terminal	GCF_005280335_PROKKA_00092, GCF_020097155_PROKKA_00133	GCF_020097155_PROKKA_00146, GCF_023573625_PROKKA_00201, GCF_005280335_PROKKA_00093, GCF_005280335_PROKKA_00195
+OG0000173	GCF_005280335	n4	1.0	Terminal	GCF_005280335_PROKKA_00093	GCF_005280335_PROKKA_00195
+OG0000197	GCF_002008305	n3	1.0	Terminal	GCF_002008305_PROKKA_00190	GCF_002008305_PROKKA_00035
+OG0000418	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_01002	GCF_005280335_PROKKA_02589
+OG0000419	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_01001	GCF_005280335_PROKKA_02588
+OG0000420	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00011	GCF_005280335_PROKKA_02586
+OG0000425	GCF_003691675	n3	1.0	Terminal	GCF_003691675_PROKKA_00098	GCF_003691675_PROKKA_00107
+OG0000432	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00172	GCF_005280335_PROKKA_02563
+OG0000573	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00729	GCF_005280335_PROKKA_00728, GCF_005280335_PROKKA_02365
+OG0000573	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00728	GCF_005280335_PROKKA_02365
+OG0000574	GCF_003691675	n3	1.0	Terminal	GCF_003691675_PROKKA_01772	GCF_003691675_PROKKA_00328
+OG0000575	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00406	GCF_005280335_PROKKA_00753
+OG0000576	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_02193	GCF_020097155_PROKKA_02192
+OG0000577	GCF_023573625	n3	1.0	Terminal	GCF_023573625_PROKKA_00894	GCF_023573625_PROKKA_00594
+OG0000595	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_01220	GCF_005280335_PROKKA_02299
+OG0000864	GCF_003691675	n3	1.0	Terminal	GCF_003691675_PROKKA_00736	GCF_003691675_PROKKA_00737
+OG0001313	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00143	GCF_005280335_PROKKA_01265
+OG0001504	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00999	GCF_005280335_PROKKA_01510
+OG0001570	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00292	GCF_020097155_PROKKA_00845
+OG0001571	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00439	GCF_020097155_PROKKA_00834
+OG0001624	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00735	GCF_020097155_PROKKA_00741
+OG0001631	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00559	GCF_005280335_PROKKA_00742
+OG0001640	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00586	GCF_005280335_PROKKA_00695
+OG0001641	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00602	GCF_020097155_PROKKA_00413, GCF_020097155_PROKKA_00937
+OG0001641	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00413	GCF_020097155_PROKKA_00937
+OG0001726	GCF_023573625	n3	1.0	Terminal	GCF_023573625_PROKKA_02213	GCF_023573625_PROKKA_02173
+OG0001759	GCF_003691675	n3	1.0	Terminal	GCF_003691675_PROKKA_00206	GCF_003691675_PROKKA_00237
+OG0001760	N1	n0	0.5	Non-Terminal	GCF_003691675_PROKKA_00303, GCF_005280335_PROKKA_02372	GCF_003691675_PROKKA_02232, GCF_005280335_PROKKA_02196, GCF_005280335_PROKKA_02198
+OG0001760	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_02196	GCF_005280335_PROKKA_02198
+OG0001761	GCF_003691675	n0	1.0	Terminal	GCF_003691675_PROKKA_00329	GCF_003691675_PROKKA_00368, GCF_003691675_PROKKA_01967, GCF_003691675_PROKKA_02017, GCF_003691675_PROKKA_01110
+OG0001761	GCF_003691675	n1	1.0	Terminal	GCF_003691675_PROKKA_00368, GCF_003691675_PROKKA_01967, GCF_003691675_PROKKA_02017, GCF_003691675_PROKKA_01110	
+OG0001762	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_02658	GCF_005280335_PROKKA_00616
+OG0001763	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00614	GCF_005280335_PROKKA_02660
+OG0001764	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00090	GCF_005280335_PROKKA_00267
+OG0001765	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00089	GCF_005280335_PROKKA_00266
+OG0001766	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00514	GCF_005280335_PROKKA_00528
+OG0001767	N0	n0	0.4	Non-Terminal	GCF_005280335_PROKKA_01863, GCF_020097155_PROKKA_01752	GCF_005280335_PROKKA_00149, GCF_020097155_PROKKA_01765, GCF_020097155_PROKKA_01759
+OG0001767	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_01765	GCF_020097155_PROKKA_01759
+OG0001768	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00656	GCF_020097155_PROKKA_01831, GCF_020097155_PROKKA_00330, GCF_020097155_PROKKA_01209
+OG0001768	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_01831	GCF_020097155_PROKKA_00330, GCF_020097155_PROKKA_01209
+OG0001768	GCF_020097155	n3	1.0	Terminal	GCF_020097155_PROKKA_00330	GCF_020097155_PROKKA_01209
+OG0001769	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00946	GCF_005280335_PROKKA_00518, GCF_005280335_PROKKA_00811, GCF_005280335_PROKKA_02387
+OG0001769	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00518	GCF_005280335_PROKKA_00811, GCF_005280335_PROKKA_02387
+OG0001769	GCF_005280335	n3	1.0	Terminal	GCF_005280335_PROKKA_00811	GCF_005280335_PROKKA_02387
+OG0001771	GCF_003691675	n2	1.0	Terminal	GCF_003691675_PROKKA_02054	GCF_003691675_PROKKA_02171
+OG0001787	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00125	GCF_020097155_PROKKA_00145
+OG0001821	GCF_002008305	n2	1.0	Terminal	GCF_002008305_PROKKA_00624	GCF_002008305_PROKKA_00638
+OG0001822	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00749	GCF_005280335_PROKKA_00734, GCF_005280335_PROKKA_00746
+OG0001822	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00734	GCF_005280335_PROKKA_00746
+OG0001840	GCF_003691675	n2	1.0	Terminal	GCF_003691675_PROKKA_01109	GCF_003691675_PROKKA_00665
+OG0001860	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_02666	GCF_005280335_PROKKA_01577
+OG0001873	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00640	GCF_020097155_PROKKA_01746, GCF_020097155_PROKKA_02236
+OG0001873	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_01746	GCF_020097155_PROKKA_02236
+OG0001881	GCF_023573625	n2	1.0	Terminal	GCF_023573625_PROKKA_01552	GCF_023573625_PROKKA_01585
+OG0001883	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01217	GCF_020097155_PROKKA_02117
+OG0001912	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00142	GCF_005280335_PROKKA_00807
+OG0001918	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_02222	GCF_020097155_PROKKA_02426, GCF_020097155_PROKKA_02440
+OG0001918	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_02426	GCF_020097155_PROKKA_02440
+OG0001938	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00535	GCF_005280335_PROKKA_02645
+OG0001939	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00531	GCF_005280335_PROKKA_02650
+OG0001953	N1	n0	0.5	Non-Terminal	GCF_003691675_PROKKA_00094, GCF_005280335_PROKKA_00775	GCF_003691675_PROKKA_01796, GCF_005280335_PROKKA_00690
+OG0001954	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_02437	GCF_005280335_PROKKA_01224
+OG0001976	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00148	GCF_020097155_PROKKA_00597
+OG0001977	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00421	GCF_020097155_PROKKA_00697, GCF_020097155_PROKKA_00721
+OG0001977	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00697	GCF_020097155_PROKKA_00721
+OG0001978	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_00733, GCF_005280335_PROKKA_00750	GCF_005280335_PROKKA_02328
+OG0001978	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_00733	GCF_005280335_PROKKA_00750
+OG0001979	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_02190	GCF_005280335_PROKKA_02581, GCF_005280335_PROKKA_02669
+OG0001979	GCF_005280335	n2	1.0	Terminal	GCF_005280335_PROKKA_02581	GCF_005280335_PROKKA_02669
+OG0001980	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_02120	GCF_020097155_PROKKA_00402, GCF_020097155_PROKKA_00715
+OG0001980	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00402	GCF_020097155_PROKKA_00715
+OG0001981	GCF_005280335	n0	1.0	Terminal	GCF_005280335_PROKKA_02337	GCF_005280335_PROKKA_02342, GCF_005280335_PROKKA_02640, GCF_005280335_PROKKA_02651
+OG0001981	GCF_005280335	n1	1.0	Terminal	GCF_005280335_PROKKA_02342, GCF_005280335_PROKKA_02640, GCF_005280335_PROKKA_02651	
+OG0001982	GCF_020097155	n0	1.0	Terminal	GCF_020097155_PROKKA_00310	GCF_020097155_PROKKA_01773, GCF_020097155_PROKKA_00409, GCF_020097155_PROKKA_00655
+OG0001982	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_01773	GCF_020097155_PROKKA_00409, GCF_020097155_PROKKA_00655
+OG0001982	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00409	GCF_020097155_PROKKA_00655
+OG0001983	GCF_020097155	n0	1.0	Terminal	GCF_020097155_PROKKA_00423	GCF_020097155_PROKKA_00644, GCF_020097155_PROKKA_01784, GCF_020097155_PROKKA_01822
+OG0001983	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00644	GCF_020097155_PROKKA_01784, GCF_020097155_PROKKA_01822
+OG0001983	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_01784	GCF_020097155_PROKKA_01822
+OG0001984	GCF_020097155	n0	1.0	Terminal	GCF_020097155_PROKKA_00698	GCF_020097155_PROKKA_00722, GCF_020097155_PROKKA_00661, GCF_020097155_PROKKA_01398
+OG0001984	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_00722	GCF_020097155_PROKKA_00661, GCF_020097155_PROKKA_01398
+OG0001984	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00661	GCF_020097155_PROKKA_01398
+OG0001985	GCF_020097155	n0	1.0	Terminal	GCF_020097155_PROKKA_00675	GCF_020097155_PROKKA_02226, GCF_020097155_PROKKA_00674, GCF_020097155_PROKKA_02225
+OG0001985	GCF_020097155	n1	1.0	Terminal	GCF_020097155_PROKKA_02226	GCF_020097155_PROKKA_00674, GCF_020097155_PROKKA_02225
+OG0001985	GCF_020097155	n2	1.0	Terminal	GCF_020097155_PROKKA_00674	GCF_020097155_PROKKA_02225

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Duplication_Events/SpeciesTree_Gene_Duplications_0.5_Support.txt

@@ -0,0 +1 @@
+(GCF_020097155_106:0.0991554,(((GCF_003691675_26:0.00698864,GCF_023573625_18:0.00733677)N3_7:0.00473911,GCF_002008305_43:0.00670489)N2_13:0.0586978,GCF_005280335_137:0.073215)N1_15:0.0991554)N0_8;

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000046_tree.txt

@@ -0,0 +1 @@
+((GCF_020097155_PROKKA_00743:0.372275,(GCF_002008305_PROKKA_01791:0.00684099,GCF_005280335_PROKKA_01085:5e-09)1:0.667738)0.946:0.0908827,(GCF_020097155_PROKKA_00733:0.256468,(GCF_003691675_PROKKA_01753:0.00821778,(GCF_002008305_PROKKA_02047:0.00345393,GCF_023573625_PROKKA_01981:5e-09)0.903:0.0197899)0.999:0.195327)0.946:0.0908827);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000067_tree.txt

@@ -0,0 +1 @@
+((GCF_005280335_PROKKA_00184:0.0198677,GCF_020097155_PROKKA_00132:1.6973):0.0263905,(GCF_020097155_PROKKA_00130:0.0130374,((GCF_002008305_PROKKA_00207:0,GCF_023573625_PROKKA_00207:0):0.00625256,GCF_003691675_PROKKA_02200:0.00220745):0.00420591):0.0263905);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000080_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02461:0.0259585,((GCF_005280335_PROKKA_01252:1.21352,GCF_005280335_PROKKA_02602:5e-09)0.65:0.00852587,(GCF_002008305_PROKKA_00359:5e-09,(GCF_003691675_PROKKA_00075:0.00420383,GCF_023573625_PROKKA_00366:5e-09)0.85:0.00421588)0.717:0.00413123)1:0.0259585);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000081_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02454:0.0315262,(GCF_005280335_PROKKA_00193:1.16516,(GCF_005280335_PROKKA_02595:0.04169,(GCF_002008305_PROKKA_00366:0.00457497,(GCF_003691675_PROKKA_00082:0.00154096,GCF_023573625_PROKKA_00373:0.00154183)0.858:0.0031645)0.968:0.0199633)0.892:0.0483287)1:0.0315262);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000119_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01669:0.0354377,(GCF_003691675_PROKKA_00373:0.895192,(GCF_005280335_PROKKA_01776:0.0354567,(GCF_003691675_PROKKA_00836:0.00105394,(GCF_002008305_PROKKA_01117:0.00106265,GCF_023573625_PROKKA_01067:0.00093907)0.789:0.00301513)0.99:0.024246)0.957:0.0506127)1:0.0354377);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000159_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00486:0.178856,(GCF_003691675_PROKKA_01107:0.842666,((GCF_002008305_PROKKA_02070:5e-09,GCF_023573625_PROKKA_01998:0.0154711)0.978:0.205072,(GCF_005280335_PROKKA_00560:0.306316,GCF_005280335_PROKKA_00743:0.0971025)0.736:0.0662949)0.926:0.193151)1:0.178856);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000166_tree.txt

@@ -0,0 +1 @@
+((GCF_020097155_PROKKA_00510:0.16577,GCF_020097155_PROKKA_01906:1.7108)0.228:0.0329425,(GCF_005280335_PROKKA_00584:0.090165,(GCF_003691675_PROKKA_01882:0.00654387,(GCF_002008305_PROKKA_02168:0.0185211,GCF_023573625_PROKKA_02113:0.0124819)0.748:0.00573356)0.886:0.0608757)0.228:0.0329425);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000227_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00254:0.170757,(GCF_005280335_PROKKA_00313:0.0647548,(GCF_002008305_PROKKA_00080:5e-09,(GCF_003691675_PROKKA_02093:0,GCF_023573625_PROKKA_00074:0):0.00597248):0.102624):0.170757);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000306_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00129:0.327524,(GCF_005280335_PROKKA_00183:0.220781,(GCF_003691675_PROKKA_02201:0.0309487,(GCF_002008305_PROKKA_00208:0.00786306,GCF_023573625_PROKKA_00208:0.00391453)0.679:0.0069961)0.643:0.0668585)1:0.327524);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000310_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00123:0.042666,(GCF_005280335_PROKKA_00174:0.0491448,(GCF_023573625_PROKKA_00212:0.0038421,(GCF_002008305_PROKKA_00212:0.00377494,GCF_003691675_PROKKA_02205:5e-09)0.758:0.00375693)0.936:0.0274181)1:0.042666);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000328_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00098:0.172905,(GCF_005280335_PROKKA_00133:0.0329039,(GCF_002008305_PROKKA_00238:0.0110848,(GCF_003691675_PROKKA_02251:0,GCF_023573625_PROKKA_00239:0):0.00389789):0.0248085):0.172905);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000332_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00094:0.273045,(GCF_005280335_PROKKA_00125:0.11449,(GCF_023573625_PROKKA_00244:0.00478008,(GCF_002008305_PROKKA_00244:0.00744673,GCF_003691675_PROKKA_02256:0.0024703)0.913:0.0127076)0.961:0.079413)1:0.273045);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000336_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00087:0.219405,(GCF_005280335_PROKKA_00119:0.0694083,(GCF_002008305_PROKKA_00251:0.00255744,(GCF_003691675_PROKKA_02263:0.00489097,GCF_023573625_PROKKA_00251:5e-09)0.796:0.00731293)0.977:0.0685083)1:0.219405);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000356_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_00049:0.0736913,(GCF_005280335_PROKKA_00069:0.316955,(GCF_002008305_PROKKA_00284:0.0517599,(GCF_003691675_PROKKA_02306:0.00227599,GCF_023573625_PROKKA_00290:0.00219277)0.924:0.0217028)0.999:0.147954)1:0.0736913);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000410_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02458:0.164309,(GCF_005280335_PROKKA_02599:0.188037,(GCF_023573625_PROKKA_00369:0.0105367,(GCF_002008305_PROKKA_00362:0.037805,GCF_003691675_PROKKA_00078:0.0178065)0.855:0.0224356)0.957:0.130578)1:0.164309);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000442_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02419:0.204415,(GCF_005280335_PROKKA_02551:0.0083951,(GCF_002008305_PROKKA_00405:0.00921262,(GCF_003691675_PROKKA_00128:0.00915356,GCF_023573625_PROKKA_00411:0.0101686)0.276:0.00526961)0.91:0.020797)1:0.204415);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000566_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02251:0.0913681,(GCF_005280335_PROKKA_02360:5e-09,(GCF_003691675_PROKKA_00305:5e-09,(GCF_023573625_PROKKA_00574:0.0273587,GCF_002008305_PROKKA_00573:0.012521)0.611:0.0112046)1:0.51918)1:0.0913681);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000572_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02245:0.0279627,(GCF_003691675_PROKKA_00317:0.0346277,(GCF_023573625_PROKKA_00585:0.0440754,(GCF_002008305_PROKKA_00584:0.0113566,GCF_005280335_PROKKA_02350:0.702043)0.715:0.0114049)0.842:0.0247192)1:0.0279627);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000586_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02167:0.0305471,(GCF_005280335_PROKKA_02310:0.0317805,(GCF_002008305_PROKKA_00653:0.00988404,(GCF_003691675_PROKKA_00390:0,GCF_023573625_PROKKA_00623:0):0.0112586):0.00954051):0.0305471);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000616_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02135:0.0563555,(GCF_005280335_PROKKA_02266:0.0291637,((GCF_002008305_PROKKA_00689:0,GCF_003691675_PROKKA_00426:0):0.00222944,GCF_023573625_PROKKA_00659:5e-09):0.0320458):0.0563555);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000633_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02116:0.0365837,(GCF_005280335_PROKKA_02244:0.0474341,(GCF_003691675_PROKKA_00445:0.00535988,(GCF_002008305_PROKKA_00714:0.00884317,GCF_023573625_PROKKA_00678:5e-09)0.544:0.00348872)0.999:0.0387572)1:0.0365837);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000685_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02049:0.0667082,(GCF_023573625_PROKKA_00743:0.00275818,(GCF_005280335_PROKKA_02154:0.0134453,(GCF_002008305_PROKKA_00776:0.00256242,GCF_003691675_PROKKA_00507:5e-09)0.705:0.00751165)0.594:0.00469502)1:0.0667082);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000686_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02048:0.10078,(GCF_023573625_PROKKA_00744:5e-09,(GCF_003691675_PROKKA_00508:5e-09,(GCF_002008305_PROKKA_00777:0.0117375,GCF_005280335_PROKKA_02153:0.036088)0.788:0.0121234)0.919:0.0119586)1:0.10078);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000701_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02031:0.0647489,(GCF_005280335_PROKKA_02138:0.0101915,((GCF_002008305_PROKKA_00793:0,GCF_003691675_PROKKA_00524:0):0.00514929,GCF_023573625_PROKKA_00760:5e-09):0.0103949):0.0647489);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000706_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_02026:0.0603045,(GCF_005280335_PROKKA_02133:0.0108558,(GCF_002008305_PROKKA_00798:5e-09,(GCF_003691675_PROKKA_00529:0,GCF_023573625_PROKKA_00765:0):0.0101602):0.0096847):0.0603045);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000778_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01935:0.0280185,(GCF_005280335_PROKKA_02037:0.102475,(GCF_002008305_PROKKA_00905:5e-09,(GCF_003691675_PROKKA_00624:0,GCF_023573625_PROKKA_00853:0):6e-09):0.0225891):0.0280185);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000782_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01931:0.0351151,(GCF_002008305_PROKKA_00909:5e-09,(GCF_003691675_PROKKA_00628:0.00840375,(GCF_005280335_PROKKA_02033:0.0621507,GCF_023573625_PROKKA_00857:0.00838903)0.619:5e-09)0.239:0.00836178)1:0.0351151);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000792_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01921:0.0651403,(GCF_005280335_PROKKA_02022:0.0246313,(GCF_003691675_PROKKA_00638:0.00474189,(GCF_002008305_PROKKA_00919:5e-09,GCF_023573625_PROKKA_00867:0.00234606)0.741:0.00230937)0.992:0.0375129)1:0.0651403);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000856_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01810:0.0658224,(GCF_005280335_PROKKA_01883:0.0303461,((GCF_002008305_PROKKA_01007:0,GCF_003691675_PROKKA_00721:0):0.0139015,GCF_023573625_PROKKA_00950:5e-09):0.0303749):0.0658224);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000857_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01809:0.192161,(GCF_005280335_PROKKA_01882:0.152713,((GCF_002008305_PROKKA_01008:0,GCF_003691675_PROKKA_00722:0):0.0275412,GCF_023573625_PROKKA_00951:0.0111524):0.129369):0.192161);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000862_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01763:0.318304,(GCF_005280335_PROKKA_01867:0.113458,(GCF_003691675_PROKKA_00734:5e-09,(GCF_023573625_PROKKA_00964:0.0228755,GCF_002008305_PROKKA_01020:0.0110592)0.51:0.00551301)0.932:0.117271)1:0.318304);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000928_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01667:0.0635165,(GCF_005280335_PROKKA_01774:0.0499413,(GCF_003691675_PROKKA_00838:0.00448605,(GCF_002008305_PROKKA_01119:0.00154107,GCF_023573625_PROKKA_01069:6e-09)0.753:0.00170832)0.992:0.0339209)1:0.0635165);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000950_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01645:0.0253497,(GCF_005280335_PROKKA_01751:0.00933244,(GCF_002008305_PROKKA_01141:5e-09,(GCF_003691675_PROKKA_00860:0,GCF_023573625_PROKKA_01091:0):0.0187488):0.00937831):0.0253497);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000969_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01621:0.131306,(GCF_005280335_PROKKA_01723:0.0552625,(GCF_023573625_PROKKA_01116:5e-09,(GCF_002008305_PROKKA_01166:0.00448684,GCF_003691675_PROKKA_00885:0.00224665)0.848:0.00678051)0.99:0.0456591)1:0.131306);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0000984_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01605:0.0119547,((GCF_002008305_PROKKA_01182:0,GCF_003691675_PROKKA_00901:0,GCF_023573625_PROKKA_01132:0):5e-09,GCF_005280335_PROKKA_01706:0.032163):0.0119547);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001022_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01563:0.223326,(GCF_005280335_PROKKA_01666:0.0557317,((GCF_002008305_PROKKA_01222:0,GCF_003691675_PROKKA_00941:0):5e-09,GCF_023573625_PROKKA_01180:0.00738119):0.0659509):0.223326);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001065_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01514:0.0830066,(GCF_005280335_PROKKA_01619:0.0437271,(GCF_002008305_PROKKA_01268:0.00978525,(GCF_003691675_PROKKA_00987:0,GCF_023573625_PROKKA_01226:0):0.00965751):0.0296031):0.0830066);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001069_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01509:0.103607,(GCF_005280335_PROKKA_01614:0.072492,(GCF_002008305_PROKKA_01273:0.00454017,(GCF_003691675_PROKKA_00992:0,GCF_023573625_PROKKA_01231:0):5e-09):0.0562744):0.103607);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001089_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01487:0.372158,((GCF_002008305_PROKKA_01301:0,GCF_003691675_PROKKA_01024:0,GCF_023573625_PROKKA_01259:0):0.0627303,GCF_005280335_PROKKA_01591:0.242459):0.372158);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001104_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01468:0.0414952,(GCF_005280335_PROKKA_01572:0.0299217,(GCF_023573625_PROKKA_01275:0.00237712,(GCF_002008305_PROKKA_01319:0.00278035,GCF_003691675_PROKKA_01040:0.00139004)0.611:0.000397999)0.42:0.00660389)1:0.0414952);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001136_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01434:0.106829,(GCF_005280335_PROKKA_01538:0.0417477,(GCF_003691675_PROKKA_01074:5e-09,(GCF_002008305_PROKKA_01354:5e-09,GCF_023573625_PROKKA_01309:0.00524452)0.841:0.00261692)0.991:0.0496001)1:0.106829);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001189_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01367:0.136033,(GCF_005280335_PROKKA_01459:0.0869306,(GCF_023573625_PROKKA_01389:5e-09,(GCF_003691675_PROKKA_01171:0.0118236,GCF_002008305_PROKKA_01439:6e-09)0.642:0.00293238)0.995:0.0879331)1:0.136033);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001273_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01259:0.0718881,(GCF_005280335_PROKKA_01368:0.0354754,(GCF_023573625_PROKKA_01484:0.000809455,(GCF_002008305_PROKKA_01557:0.00530285,GCF_003691675_PROKKA_01267:0.00525066)0.779:0.00713508)0.998:0.0605611)1:0.0718881);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001303_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01200:0.00597333,(GCF_005280335_PROKKA_01292:0.0138805,((GCF_002008305_PROKKA_01602:0,GCF_023573625_PROKKA_01529:0):0.00295582,GCF_003691675_PROKKA_01314:5e-09):0.00894291):0.00597333);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001347_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01136:0.0585675,(GCF_005280335_PROKKA_01208:0.00727363,(GCF_002008305_PROKKA_01670:0.00265228,(GCF_003691675_PROKKA_01375:0.00271818,GCF_023573625_PROKKA_01600:0.00530175)0.769:5e-09)0.892:0.00900774)1:0.0585675);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001393_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01088:0,(GCF_002008305_PROKKA_01720:0,GCF_003691675_PROKKA_01427:0,GCF_005280335_PROKKA_01158:0,GCF_023573625_PROKKA_01649:0)1:0);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001412_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01066:0.0351229,(GCF_005280335_PROKKA_01137:0.0417332,(GCF_003691675_PROKKA_01447:6e-09,(GCF_002008305_PROKKA_01740:0.00284559,GCF_023573625_PROKKA_01669:0.00286359)0.455:0.00286083)0.995:0.0367854)1:0.0351229);

Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Gene_Trees/OG0001439_tree.txt

@@ -0,0 +1 @@
+(GCF_020097155_PROKKA_01031:0.0702494,(GCF_005280335_PROKKA_01105:0.089597,((GCF_002008305_PROKKA_01772:0,GCF_003691675_PROKKA_01479:0):5e-09,GCF_023573625_PROKKA_01701:0.0210292):0.0880842):0.0702494);