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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/Duplications_per_Species_Tree_Node.tsv ADDED
@@ -0,0 +1,10 @@
 
 
 
 
 
 
 
 
 
 
 
1
+ Species Tree Node Duplications (all) Duplications (50% support)
2
+ N1 22 15
3
+ GCF_023573625 18 18
4
+ GCF_005280335 137 137
5
+ N2 30 13
6
+ GCF_002008305 43 43
7
+ N3 7 7
8
+ GCF_003691675 26 26
9
+ N0 37 8
10
+ GCF_020097155 106 106
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/Orthogroups_SpeciesOverlaps.tsv ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ GCF_002008305 GCF_003691675 GCF_005280335 GCF_020097155 GCF_023573625
2
+ GCF_002008305 2095 1989 1922 1841 1983
3
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4
+ GCF_005280335 1922 1919 2108 1884 1914
5
+ GCF_020097155 1841 1843 1884 2035 1867
6
+ GCF_023573625 1983 2013 1914 1867 2096
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/OrthologuesStats_Totals.tsv ADDED
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1
+ GCF_002008305 GCF_003691675 GCF_005280335 GCF_020097155 GCF_023573625
2
+ GCF_002008305 0.0 2117.0 1982.0 1885.0 2103.0
3
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4
+ GCF_005280335 2028.0 2045.0 0.0 2012.0 2029.0
5
+ GCF_020097155 1926.0 1914.0 1986.0 0.0 1947.0
6
+ GCF_023573625 2053.0 2119.0 1949.0 1893.0 0.0
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/OrthologuesStats_many-to-many.tsv ADDED
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1
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2
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3
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4
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5
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6
+ GCF_023573625 4.0 2.0 16.0 2.0 0.0
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/OrthologuesStats_many-to-one.tsv ADDED
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1
+ GCF_002008305 GCF_003691675 GCF_005280335 GCF_020097155 GCF_023573625
2
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3
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4
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5
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6
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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/OrthologuesStats_one-to-many.tsv ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ GCF_002008305 GCF_003691675 GCF_005280335 GCF_020097155 GCF_023573625
2
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3
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4
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5
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6
+ GCF_023573625 36.0 20.0 80.0 55.0 0.0
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/OrthologuesStats_one-to-one.tsv ADDED
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1
+ GCF_002008305 GCF_003691675 GCF_005280335 GCF_020097155 GCF_023573625
2
+ GCF_002008305 0.0 2010.0 1816.0 1765.0 1994.0
3
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4
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5
+ GCF_020097155 1765.0 1778.0 1755.0 0.0 1808.0
6
+ GCF_023573625 1994.0 2075.0 1824.0 1808.0 0.0
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/Statistics_Overall.tsv ADDED
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1
+ Number of species 5
2
+ Number of genes 11758
3
+ Number of genes in orthogroups 11058
4
+ Number of unassigned genes 700
5
+ Percentage of genes in orthogroups 94.0
6
+ Percentage of unassigned genes 6.0
7
+ Number of orthogroups 2370
8
+ Number of species-specific orthogroups 41
9
+ Number of genes in species-specific orthogroups 98
10
+ Percentage of genes in species-specific orthogroups 0.8
11
+ Mean orthogroup size 4.7
12
+ Median orthogroup size 5.0
13
+ G50 (assigned genes) 5
14
+ G50 (all genes) 5
15
+ O50 (assigned genes) 1017
16
+ O50 (all genes) 1087
17
+ Number of orthogroups with all species present 1709
18
+ Number of single-copy orthogroups 1563
19
+ Date 2026-05-20
20
+ Orthogroups file Orthogroups.tsv
21
+ Unassigned genes file Orthogroups_UnassignedGenes.tsv
22
+ Per-species statistics Statistics_PerSpecies.tsv
23
+ Overall statistics Statistics_Overall.tsv
24
+ Orthogroups shared between species Orthogroups_SpeciesOverlaps.tsv
25
+
26
+ Average number of genes per-species in orthogroup Number of orthogroups Percentage of orthogroups Number of genes Percentage of genes
27
+ <1 600 25.3 1764 16.0
28
+ '1 1753 74.0 8972 81.1
29
+ '2 8 0.3 93 0.8
30
+ '3 3 0.1 49 0.4
31
+ '4 1 0.0 23 0.2
32
+ '5 3 0.1 79 0.7
33
+ '6 1 0.0 32 0.3
34
+ '7 0 0.0 0 0.0
35
+ '8 0 0.0 0 0.0
36
+ '9 1 0.0 46 0.4
37
+ '10 0 0.0 0 0.0
38
+ 11-15 0 0.0 0 0.0
39
+ 16-20 0 0.0 0 0.0
40
+ 21-50 0 0.0 0 0.0
41
+ 51-100 0 0.0 0 0.0
42
+ 101-150 0 0.0 0 0.0
43
+ 151-200 0 0.0 0 0.0
44
+ 201-500 0 0.0 0 0.0
45
+ 501-1000 0 0.0 0 0.0
46
+ '1001+ 0 0.0 0 0.0
47
+
48
+ Number of species in orthogroup Number of orthogroups
49
+ 1 41
50
+ 2 249
51
+ 3 130
52
+ 4 241
53
+ 5 1709
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Comparative_Genomics_Statistics/Statistics_PerSpecies.tsv ADDED
@@ -0,0 +1,100 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ GCF_002008305 GCF_003691675 GCF_005280335 GCF_020097155 GCF_023573625
2
+ Number of genes 2252 2257 2623 2432 2194
3
+ Number of genes in orthogroups 2192 2203 2300 2205 2158
4
+ Number of unassigned genes 60 54 323 227 36
5
+ Percentage of genes in orthogroups 97.3 97.6 87.7 90.7 98.4
6
+ Percentage of unassigned genes 2.7 2.4 12.3 9.3 1.6
7
+ Number of orthogroups containing species 2095 2104 2108 2035 2096
8
+ Percentage of orthogroups containing species 88.4 88.8 88.9 85.9 88.4
9
+ Number of species-specific orthogroups 1 1 13 26 0
10
+ Number of genes in species-specific orthogroups 2 5 30 61 0
11
+ Percentage of genes in species-specific orthogroups 0.1 0.2 1.1 2.5 0.0
12
+
13
+
14
+ Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups
15
+ '0 275 266 262 335 274
16
+ '1 2044 2056 1983 1923 2065
17
+ '2 36 32 98 84 21
18
+ '3 7 4 16 18 2
19
+ '4 2 2 4 7 2
20
+ '5 4 6 2 1 3
21
+ '6 1 1 1 0 2
22
+ '7 0 2 1 1 0
23
+ '8 0 0 1 0 0
24
+ '9 0 0 1 0 0
25
+ '10 0 0 0 0 1
26
+ 11-15 0 1 0 0 0
27
+ 16-20 0 0 1 1 0
28
+ 21-50 1 0 0 0 0
29
+ 51-100 0 0 0 0 0
30
+ 101-150 0 0 0 0 0
31
+ 151-200 0 0 0 0 0
32
+ 201-500 0 0 0 0 0
33
+ 501-1000 0 0 0 0 0
34
+ '1001+ 0 0 0 0 0
35
+
36
+ Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups
37
+ '0 11.6 11.2 11.1 14.1 11.6
38
+ '1 86.2 86.8 83.7 81.1 87.1
39
+ '2 1.5 1.4 4.1 3.5 0.9
40
+ '3 0.3 0.2 0.7 0.8 0.1
41
+ '4 0.1 0.1 0.2 0.3 0.1
42
+ '5 0.2 0.3 0.1 0.0 0.1
43
+ '6 0.0 0.0 0.0 0.0 0.1
44
+ '7 0.0 0.1 0.0 0.0 0.0
45
+ '8 0.0 0.0 0.0 0.0 0.0
46
+ '9 0.0 0.0 0.0 0.0 0.0
47
+ '10 0.0 0.0 0.0 0.0 0.0
48
+ 11-15 0.0 0.0 0.0 0.0 0.0
49
+ 16-20 0.0 0.0 0.0 0.0 0.0
50
+ 21-50 0.0 0.0 0.0 0.0 0.0
51
+ 51-100 0.0 0.0 0.0 0.0 0.0
52
+ 101-150 0.0 0.0 0.0 0.0 0.0
53
+ 151-200 0.0 0.0 0.0 0.0 0.0
54
+ 201-500 0.0 0.0 0.0 0.0 0.0
55
+ 501-1000 0.0 0.0 0.0 0.0 0.0
56
+ '1001+ 0.0 0.0 0.0 0.0 0.0
57
+
58
+ Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes Number of genes
59
+ '0 0 0 0 0 0
60
+ '1 2044 2056 1983 1923 2065
61
+ '2 72 64 196 168 42
62
+ '3 21 12 48 54 6
63
+ '4 8 8 16 28 8
64
+ '5 20 30 10 5 15
65
+ '6 6 6 6 0 12
66
+ '7 0 14 7 7 0
67
+ '8 0 0 8 0 0
68
+ '9 0 0 9 0 0
69
+ '10 0 0 0 0 10
70
+ 11-15 0 13 0 0 0
71
+ 16-20 0 0 17 20 0
72
+ 21-50 21 0 0 0 0
73
+ 51-100 0 0 0 0 0
74
+ 101-150 0 0 0 0 0
75
+ 151-200 0 0 0 0 0
76
+ 201-500 0 0 0 0 0
77
+ 501-1000 0 0 0 0 0
78
+ '1001+ 0 0 0 0 0
79
+
80
+ Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes Percentage of genes
81
+ '0 0.0 0.0 0.0 0.0 0.0
82
+ '1 90.8 91.1 75.6 79.1 94.1
83
+ '2 3.2 2.8 7.5 6.9 1.9
84
+ '3 0.9 0.5 1.8 2.2 0.3
85
+ '4 0.4 0.4 0.6 1.2 0.4
86
+ '5 0.9 1.3 0.4 0.2 0.7
87
+ '6 0.3 0.3 0.2 0.0 0.5
88
+ '7 0.0 0.6 0.3 0.3 0.0
89
+ '8 0.0 0.0 0.3 0.0 0.0
90
+ '9 0.0 0.0 0.3 0.0 0.0
91
+ '10 0.0 0.0 0.0 0.0 0.5
92
+ 11-15 0.0 0.6 0.0 0.0 0.0
93
+ 16-20 0.0 0.0 0.6 0.8 0.0
94
+ 21-50 0.9 0.0 0.0 0.0 0.0
95
+ 51-100 0.0 0.0 0.0 0.0 0.0
96
+ 101-150 0.0 0.0 0.0 0.0 0.0
97
+ 151-200 0.0 0.0 0.0 0.0 0.0
98
+ 201-500 0.0 0.0 0.0 0.0 0.0
99
+ 501-1000 0.0 0.0 0.0 0.0 0.0
100
+ '1001+ 0.0 0.0 0.0 0.0 0.0
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000007.fa ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00158
2
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
3
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
4
+ >PROKKA_01033
5
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
6
+ YYRWRNQYGGLKAEDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
7
+ >PROKKA_01293
8
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
9
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
10
+ >PROKKA_01383
11
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
12
+ YYRWRKQNATLKRLLAEAELEKAALKELAEGNF
13
+ >PROKKA_02076
14
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
15
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
16
+ >PROKKA_01016
17
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
18
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
19
+ >PROKKA_01103
20
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
21
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
22
+ >PROKKA_01111
23
+ MRVVLLPAVADRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
24
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
25
+ >PROKKA_01115
26
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
27
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
28
+ >PROKKA_02022
29
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
30
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
31
+ >PROKKA_01213
32
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
33
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
34
+ >PROKKA_00589
35
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
36
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
37
+ >PROKKA_00591
38
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
39
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
40
+ >PROKKA_01251
41
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
42
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
43
+ >PROKKA_01338
44
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
45
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
46
+ >PROKKA_01886
47
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
48
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
49
+ >PROKKA_02204
50
+ MRVVLLPAVAGRETGQIMTNSRKRHTPEQVVRKLGQADRMLADGQDVAAVCRELGVSEQT
51
+ YYRWRNQYGGLKADDAKRLKELEKQNATLKRLLAEAELEKAALKELAEGNF
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000066.fa ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00198
2
+ MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
3
+ PRGWAAVVGLGAAMTGMNLAIYEAFARIPQGVAVTFEVLGPLALSVAARPSWRSAAWAAL
4
+ ALAGIGVLGREGFSADGGIGGAGLDPVGVALALAAAACWAGYILLSRRAGTHLPGVQGLA
5
+ LATAAGSLVALPVGVATAGAALLSPVVLGVGLAVALLSTAVPYGIDLQVLRRMPTALFSL
6
+ LTCLSPIAAALTAWAVRGQELTPLDLAGMLLVIAACAAAVWTSRSPGVAGGGRG
7
+ >PROKKA_02026
8
+ MAVAVYPLAFYTSIHWAGVAIGSVVSLASAPLASGLLERIVEYRRLSRWWMLAAALGGTG
9
+ AALLCLSQLDQEAASSTATLAGVLLGLVAGATYATYSWAAHRLIHDGISRAASMGAVFGA
10
+ GGALLLPVLVLTGAPLIATPQAFAVAAYMALVPMFLGYVLFGYGLTRVPASTATTITLTE
11
+ PAIAAILAVAVVGERLTPVGWTGLGIIAAVLFILALTPTNTTADRHGRTPTSEAIQPALA
12
+ PSPRRHNERTSPRDDAGRGSDVMWVSQTMRCQGATRPSRWEGVRGRFRKPYRLRPVSPDH
13
+ GRATCGERTEIMRPARGLDARSVLAATMET
14
+ >PROKKA_02194
15
+ MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
16
+ PRGWAAVVGLGAAMTGMNLAIYEAFARIPQGVAVTFEVLGPLALSVAARPSWRSAAWAAL
17
+ ALAGIGVLGREGFSADGRIGGAGLDPVGVALALAAAACWAAYILLSQRAGTHLPGVQGLA
18
+ LATAAGSLVALPVGVATAGAALLSPVVLGVGLAVALLSTAVPYGIDLQVLRRMPTALFSL
19
+ LTCLSPIAAALTAWAVRGQQLTPLDLAGMLLVIAACAAAVWTSRSPGVSGGARG
20
+ >PROKKA_00197
21
+ MRLIPLVLLSLLCQQLGASVAGLMFGTTGPAGMVALRLAFSALVLLVLTRPRMRTLAGLS
22
+ RRGWVAVVMLGVTMAGMNLLIYAAFDRIPQGVAVTFEVLGPLALSVLANRRWLSVVWAAL
23
+ AFAGIALLGRDGFSAGMDGAGLDPLGVAFALAAAACWAGFILANRHAGTHLPGVQGLALA
24
+ MVVGSAVAVPVGAADAGPVLLEPWVLAVGLGVALLSSSIPYGIEMQVLRTMPTGLFSLIT
25
+ CLSPVVAALTAWAVRGQRLAVLDLGGMGLVVLACGAAVWAAERAARPSRRAPRTS
26
+ >PROKKA_00149
27
+ MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
28
+ PRGWAAVVGLGAAMTGMNLAIYEAFARIPQGVAVTFEVLGPLALSVAARPSWRSAAWAAL
29
+ ALAGIGVLGREGFSADGGIGGAGLDPVGVALALAAAACWAAYILLSRRAGTHLPGVQGLA
30
+ LATAAGSLVALPVGVATAGAALLSPVVLGVGLAVALLSTAVPYGIDLQVLRRMPTALFSL
31
+ LTCLSPIAAALTAWAVRGQELTPLDLAGMLLVIAACAAAVWTSRSPGVAGGGRG
32
+ >PROKKA_00198
33
+ MRLVLLVLLSLLSQQLGASVAGLLFDDVGASAMVALRVVFSAAVLLLVTRPSRAALAGLG
34
+ PRGWAAVVGLGAAMTGMNLAIYEAFARIPQGVAVTFEVLGPLALSVAARPSWRSAAWAAL
35
+ ALVGIGVLGREGFSADGGIGGAGLDPVGVALALAAAACWAAYILLSRRAGTHLPGVQGLA
36
+ LATAAGSLVALPVGVATAGTALLSPVVLGVGLAVALLSTAVPYGIDLQVLRHMPTALFSL
37
+ LTCLSPIAAALTAWAVRGQELTPLDLAGMLLVIAACAAAVWTGRSPGVAGGGRS
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000092.fa ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00554
2
+ MSALVRPLRPEDHEAVAELTLASYVDGGHIAPDDAYVKTLMDVADRAGRAEVLVAEVDGE
3
+ VAGSVVLTPPGSPLAETSGDGEYEFRMLAVHPRFHRRGVGGALLAEIVARARAEEGVDAV
4
+ VLTTMPSMTGAHRMYERAGFVRVPERDWFLADVVPDLDPADETGPFLVYRLALD
5
+ >PROKKA_00279
6
+ MSALVRPLRPEDHEAVAELTLASYVDGGHIAPDDAYVKTLMDVADRAGRAEVLVAEVDGE
7
+ VAGSVVLTPPGSPLAETSGDGEYEFRMLAVHPRFHRRGVGGALLAEIVARARAEEGVDAV
8
+ VLTTMPSMTGAHRMYERAGFVRVPERDWFLADVVPDLDPADETGPFLVYRLALD
9
+ >PROKKA_00640
10
+ MERPAPTAEICPVRPEDTDAVVALWERTLPEYGDPTRPQRAPRPSIRRKLDWGDGLFWLA
11
+ VSDEEVVGTVMAGYDGHRGWIYSLAVHPDHRRGGLGTALVAHAEQELARLGCPKVNLQVL
12
+ ATNADGAEFWAATGYQPDPVLGLGKRLGG
13
+ >PROKKA_02391
14
+ MTETAPTVPTPPARPQVRPLRPEDHEAVAALTVASYVDGGHIAPGSRYVKTLRDVAGRAA
15
+ RAEVLVAEVDGQVAGSVVLTPLGSPMAETAAPGEYEFRMLAVHPDHHRRGVARTLMAVIE
16
+ ERARALPGIEAIALTTMPTMTDAHRLYEALGYVRVPERDWYLRDVIPDLDPADETGPFLV
17
+ YRLPLA
18
+ >PROKKA_02275
19
+ MSDVTVRALRPEDHEAVAALTLASYTTGGHFEAESDYLETLADVAGRAAVAEVLVAELDG
20
+ QVAGSLVLTPHGSPMAETSVPGEYEFRMLAVDPAVHRRGVATALLAEVVRRARATPGVEA
21
+ IALSTMTSMTDAHRMYERLGFVRVPDRDWRLSDLEPGLDPAEDAGPFLVYRLPLT
22
+ >PROKKA_00557
23
+ MSALVRPLRPEDHEAVAELTLASYVDGGHIAPDDAYVKTLMDVADRAGRAEVLVAEVDGE
24
+ VAGSVVLTPPGSPLAETSGDGEYEFRMLAVHPRFHRRGVGGALLAEIVARARAEEGVDAV
25
+ VLTTMPSMTGAHRMYERAGFVRVPERDWFLADVVPDLDPADETGPFLVYRLALD
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000098.fa ADDED
@@ -0,0 +1,33 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00626
2
+ MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSAREWSDAHAANAVLDAHAGDP
3
+ EFGYRFLADELRGRGLAVSDHQVLKACRLVRVRCCHWFRRGSGKRPGPAVHDDLVRREFR
4
+ AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLALDALQMALARR
5
+ GGKAEVQGCRVHSDRGSQGGFNRSSQHPLGITGGMGDGKQGLGEEDQ
6
+ >PROKKA_00371
7
+ MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
8
+ EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
9
+ AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALARR
10
+ GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
11
+ LNRRRWQSFDQLRLAIVSWIERTYHRRRRQARLRKLTPVEFEMVQSVQAAAAA
12
+ >PROKKA_00392
13
+ MTYPVVKDLARDGIPVRLCCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
14
+ EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
15
+ AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALARR
16
+ GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
17
+ LNRRRWQSFDQLRLAIVSWIERTYHRRRRQAPLGRLTPVEFEMVQSVQAAAAA
18
+ >PROKKA_00411
19
+ MTYPVVKDLARDGIPVRLCCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
20
+ EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFR
21
+ AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFLKRPGSDEDS
22
+ >PROKKA_02188
23
+ MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYPWLAEPVSAREWSDAHAANAVFDAHADDP
24
+ EFGYRFLADELRGRGLDVSDHQVLKACRLVRVRCCHSIRRGSGKRPGPAVHDDLVRRQFR
25
+ ADKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSIDRRMSSQLAVDALQMALARR
26
+ GGKAGVQGCRVHSDRGSQFRARRFVETLRVNSLIGSMGRVGAAGDNAAMESFFALLQKNV
27
+ LNRRRWDSFAQLRLAIVSWIERTYHRRRRQARLGKLTPVEFEMVQSVQAAAAA
28
+ >PROKKA_00605
29
+ MTYPVVKDLARDGIPVKLSCRVLGFSRQAYYQWLAEPVSEREWSDAHAANAVLDAHADDP
30
+ EFGYRFLADELRGRGLAVSDHQVLKACRLVKVRCCHSIRRGSGKRPGPAVHDDLVRREFA
31
+ AEKPNQLWLTDISEHWAGDSKLYLCAVKDVFSNRIVGYSINRRMSSQLAVDALQMALGRR
32
+ GGKAEVQGCRVHSDRGSQFRARRFVETLRVNGLVGSMGRVGAAGDNAAMESFFALLQKNV
33
+ LNRRRWQSFDQLRLAIVSWIERTYHRRRRQARLGKLTPVEFEMVQSVQAAAAA
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000100.fa ADDED
@@ -0,0 +1,36 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00644
2
+ MTSVPTVPFHDGQQIPQLGFGVWKVEDDVAADVVEQAIRAGYRHIDTAAIYGNEEGVGRG
3
+ IAASGVAREELFLTTKVWNSDQGYEEALAALDVSLDKLGTDYVDLYLIHWAKPAQGKYLE
4
+ TWKALIEAQKQGKVRSIGVSNFPAAQLEEIIEATGVVPVIHQVETHPYWQQRELREVEGR
5
+ HGIVHESWSPLGQGGDLLADPVVTEIAEARGATPAQVVIAWHLAHGFVVIPKSVTPERIV
6
+ SNLEAAGVELTDDDVARIDALDREDGRLGPDPAVIDF
7
+ >PROKKA_00381
8
+ MTDVPTVPFHDGQQIPQLGLGVWQVEDDVAADVVEQAIRAGYRHIDTAAIYGNEEGVGRG
9
+ IAASGVAREELFLTTKVWNSDQGYEEALAALDVSLDKLGTDYVDLYLIHWAKPAQGKYLD
10
+ TWKALIEAQKRGKVRSIGVSNFPAAQLEEIIEATGVVPVIHQVETHPYWQQRELREVEGR
11
+ HGIVHESWSPLGQGGDLLADPVVTEIAEVRGATPAQVVIAWHLAQGFVVIPKSVTPERIV
12
+ SNLEAAGVELTDDDVARIDALDREDGRLGPDPAVIDF
13
+ >PROKKA_02319
14
+ MTSVPTVPFHDGQSIPQLGYGVWRVEDEVAADVVAQAIRAGYRHIDTAAIYGNEEGVGRA
15
+ VAASGVPREELFITTKVWNSAHGYDEALAALEESLGKLGTDYVDLWLIHWAKPTQGRYVD
16
+ TWKALIEAQRQGKVRSIGVSNFPAEQLEEIIEATGVVPVIHQVETHPYWQQRELRELEER
17
+ HGILHESWSPLGQGGELLEDPEITAIAEAHGATPAQVVIAWHLAKGFVVIPKSVTSERIV
18
+ SNLAAADVELTEDEVARIDALDREDGRIGPDPATIEF
19
+ >PROKKA_00584
20
+ MSTDSRHTAIPVDETPVPETLTLTGTGVDGVEMPRIGLGTWPLRGAEARDAVEQALRIGY
21
+ RHVDTAQNYGNEDAVGEGIAAAIHAGVLDRDQLFVTTKVNREHHGDARTVRAAVECRLRV
22
+ LGLEHVDLVLVHWPNPDQDRYLETAWSLSELAEDGRIRAWGVSNFTPAHLDRLAGAGLRA
23
+ PVDQIEVGPLRQSPAWQEGVRAHGAAITAYSPLGRADQDLGALEPVAAAAARTGRTPAQV
24
+ VLRWHLQSGRAAVPKSVDPARQAQNLDVFSFALTAEEMAAIDALDTGEGPRRHPDEFGH
25
+ >PROKKA_02178
26
+ MTTVPQTPFRDGQSIPQLGYGVWQVEDAVAADVVEQAVRAGYRHIDTAAVYGNEEGVGRA
27
+ VAAAGVPREELFITTKVWNSDQGYDEALAALEASLAKLGTDYVDLWLIHWAKPAQGKYVD
28
+ TWKALIEAQRQGRARSIGVSNFPAEQLEEIISATGVVPVIHQVETHPYWQQRELREVESR
29
+ HGIVHESWSPLGQGGELLSDPVITAIAEAHGATPAQVVIAWHLAEGFVVIPKSVTPERIV
30
+ SNLTAAELELTAEEVDQIRGLDRADGRIGPDPASITF
31
+ >PROKKA_00614
32
+ MTDVPTVPFHDGQQIPQLGLGVWQVEDDVAADVVEQAIRAGYRHIDTAAIYGNEEGVGRG
33
+ IAASGVAREELFLTTKVWNSDQGYEEALAALDASLDKLGTDYVDLYLIHWAKPAQGKYLD
34
+ TWKALIEAQKQGKVRSIGVSNFPAAQLEKIIEATGVVPAIHQVETHPYWQQRELREVEGR
35
+ HGIVHESWSPLGQGGDLLADPVVTEIAEARGATPAQVVIAWHLAQGFVVIPKSVTPERIV
36
+ SNLEAAGVELTADDVARIDALDREDGRLGPDPAVIDF
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000127.fa ADDED
@@ -0,0 +1,81 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_01369
2
+ MSSARRDPLVGGIVDGRYRVVERLARGGMSTVYLAVDERLDRQVALKVMHPHLAEDPVLV
3
+ GRFEQEAKTTARLSHPHVVAVLDQGHTEAEDGDVLAYLVMEHVPGRTLRTVIRDRAPLSP
4
+ REALRFLRPLVDGLAAAHGAGLVHRDVKPENVLVRDDGRVTVADFGLSRAATAHTMAGQA
5
+ VVGTPAYLAPEHIAGAPADARSDVYAVGIILFELLTGRQPYTAATALQVAYRHVHERVPV
6
+ PSTLHPGLPEDLDDLVLWCTEPDPADRPAGAGELLHRIEAVAAGLDPDAPDRRPAAQPAE
7
+ GPGADPAPAGPAADGLEDAAPDGNLETRALDAGDHHATRVLPALAESDLDEDMTDVIDTR
8
+ VATHGGDPRPAARPAEPIGPLGLDPAPADRHPGRGSRRRLRRAARRPALDLGQGTGRAAA
9
+ IGAAVTLLLTGVALLLGWTLGSGGLGVGGVAVVPDLDGLAREAAEERLTAAGFTAAVTAR
10
+ HDELRTEGTVVASSPAAGEPAGRGAPVELTVSAGPAPVPVPDLTGVVIRQAHGVARDARF
11
+ TVEVAERRTDPAVPAGAVIEQHPAPGEQATPGTAVRVVLSEGRAVRPVPDMTGQDPETAH
12
+ TTLADEGWDARVHRLPLPLSARGESRVLHQSPAAGTALPEGTAVHVWVG
13
+ >PROKKA_01953
14
+ MSLPDARWHVVSPSPFEHEQQGLDILREVLPDESPFQVWTNFEFPDEDGQWHEVDALVLA
15
+ RTKFILVELKYYSGVLRGTGLRWERPGHSPQRSPLALAKKKAERFRSLLERTIESKMPGA
16
+ GRQRIVPYVDYAVFLHHDRFRNEMAPQDSGRLFGLPHNETASNLPSIEHLVLAPATDRFP
17
+ LIGEPREQVLVALMEHLNLADARQPEVGSWLLEERLGEPTPDGQDWLASHRFQERHFARI
18
+ RFQQPREGAPSSDLARVREAARREFDLTRALHHEGLLTASDRVDNELGVGLVFPYDESLA
19
+ PLPLWLESRAATLSQQNRLDLLRQLAETLEYVHSNGIVHRALSPEALWVKTPKQGEPRIL
20
+ VADWQLAGVADRDKVDHAASLTQLSTQFGTTVRSTEELAPTSGALFRAPEDARRVSSLGR
21
+ YKLDVFSVGALAAYLLTGAPAANTVAELHEHLATHQGLDVSVALPSVPEPVRQAILHATD
22
+ PRPTARTATLNDFLAGLTEAQATAPQPASPALDPLEAAPGQALDSRFTLVRRLGKGSTAV
23
+ GLLVDDAQTGSRQVLKVALDDEAATRLDDEAQVLRLLPLHKRLVRLLDGPFDVGGRRALL
24
+ LTSAGTRTLSEVLRERQRLSLDHLERFGSELLEAAQALDAAGLRHRDVKPANIGVVRTPK
25
+ HGEHLVLFDFSLARARSTDVRAGTPPYLDPFLEQGGRTGYDSAAELYAVAVVLYEMASGQ
26
+ KPFYGDPEANPAAVRDDLTVPDGIFDPSLQAPLSALFERALARDAQARFHTVAELAAAWE
27
+ ALFRNDADPVTAQDAETLAARATLETPLSEAGLSARGLSALEAIKVTAGPGGVAVEPHDV
28
+ RTVRDLVLVDPIKLNSLAGSTTETRAEVRARAKQWRAAFKKELMRQATQVPQGTLPTPLD
29
+ AAELLLRHAGAAHAEGVRAQLRLVLGLDGEVPALSTHAVLADARGVTPGLVPQLFGRAQQ
30
+ AWTDVAETRSLLDSLDGALRAAVAERGGVSTPDELTSALEQTLSPATPAEVRDAEPRRIV
31
+ QGLLWLLLDRERAAARGEADVPALVQRRREGRVVAVAEMPVLLDVAETLGAAAEAAVDGA
32
+ GDPESALVPADLVQTRVAAVLDAVDGLPEALRSWRRAAALAAHVSATTCLSAAGEWHHRL
33
+ LAPATAAHHALQGASGTVQLSRERAAERVGARFPALSPLPRDAALDRVLAEAELGLVFDE
34
+ DLGPQGAYRSRQTLAPTTGFATRAETRLVEHQRPLSELGVEGQRLLDSQRNRSYLALGVP
35
+ AQRLARLESALVRRFHAEPLDLTDLFIRLLKDQAAAHPKMTWDHVTAADAEPDGSRPAQG
36
+ LNVLVRNLLPELEQHLSRTIGDPGRAASPVLLTGAAVLARYGHLGVLARWADLAEYRARP
37
+ VWLVVPQVAGNVGPRLDGVSVPKNTPGQYVPLTPEWIDGLAALMAAQPLTEESRT
38
+ >PROKKA_01089
39
+ MSSARRDPLVGGIVDGRYRVVERLARGGMSTVYLAVDERLDRQVALKVMHPHLAEDPVLV
40
+ GRFEQEAKTTARLSHPHVVAVLDQGHTEAEDGDVLAYLVMEHVPGRTLRTVIRDRAPLSP
41
+ REALRFLRPLVDGLAAAHRAGLVHRDVKPENVLVRDDGRVTVADFGLSRAATAHTMAGQA
42
+ VVGTPAYLAPEHIAGAPADARSDVYAVGIILFELLTGRQPYTAATALQVAYRHVHERVPV
43
+ PSTLHPGLPEDLDDLVLWCTEPDPADRPAGAGELLHRIDAVAAGLDPDEPDRHPAEGPGA
44
+ EPAVAAPAADGPEDAAPDGNLQTRALDAGDHHATRVLPALAESDLDADMTDVIDTRAATR
45
+ GADRRPAAHPAEPIGPLGLDPAPADRHPGRESPRRLRRAARRPALDLGQGTGRAAAIGAA
46
+ VTLLLTGVALLLGWTLGSGGLGVGGVAVVPDLDGLAREAAEERLTAAGFTAAVTARHNEL
47
+ RTEGTVVASSPAAGEPAGRGTPVELTVSAGPAPVPVPDLTGVVIRRAHGVARDARFTVEV
48
+ AERRTDPAVPAGAVIEQHPAPGEQATPGTAVRVVLSEGRAVRPVPDVTGQDPETARTTLA
49
+ DDGWDARVHRLPLPLAGRGESRVLHQSPAAGTALPEGTAVHVWVG
50
+ >PROKKA_01524
51
+ MSSTRRDPLVGGIVDGRYEVLARLARGGMSTVYLALDTRLDREVALKVMHPHLAEDPVLV
52
+ GRFEQEAKTAARLSHPHVVAVLDQGHTEDASGEVLAYLVMEHVPGHTLRTVIREQAPLTP
53
+ REALRHLRPLVDGLAAAHRAGLVHRDAKPENVLVRTDGRITVADFGLSRAATAHTSAGQA
54
+ VVGTPAYLAPEHIAGAPADARSDVYAAGIILFELLTGRQPFTAGTALQVAYRHVHERVPV
55
+ PSSLQPGLPEALDDLVLWCTEPDPADRPADAGEVLDRLDAVAAELGPAELDRPPVLVPDA
56
+ VEGRPGPEHDETTTLDALDRLDPKDPLDDADGDETTSLDAGDHHATRVLPSLPADALPTE
57
+ ALAADDVVRRSPARRRRRP
58
+ >PROKKA_01419
59
+ MSSTRRDPLIGDLVDGRYEVLDRVARGGMSTVYRALDHRLDREVALKVMHPHLAEDPALV
60
+ GRFEREAKTAARISHPHVVAVLDQGHTADEAGDVLAYLVMEHVPGRTLRAVIREEAPVAP
61
+ RRAVALLEPVVEGLAAAHRAGLVHRDVKPENVLVRTDGRITVADFGLSRAATGHTSAGQT
62
+ VFGTPAYLAPELISGTGGDARADVYGVGIMLFELLTGTQPFTAATPLQVAYRHVHERVPV
63
+ PSSVRPGLPEALDDIVLWCTEPRPADRPEDAAALLPELRRVAALLPQTAPADEAPAADDA
64
+ PTVALAVSPTVPTVPVPDAADATARLEPRRPDPRRAEPVPTPATATAASPSSDLSSAVPE
65
+ APRPAPVAPRPASARQRRRTARTPEVVLGAGMGRTVAVGAAVTLLLAGMALLLGWILGSG
66
+ GISGPAGVVVPPLWGLEQQEAAARLAEAGLTSAVVSRHDERFSDGVVLDVSPAAGSTVDA
67
+ GGPVRLTVSDGPAPVPAPDLAGLTVTDAHAVAEDGRVGVVVADRVADRAVPAGAVVSQSP
68
+ EAGAEMTPGDEVAVVLSTGPATHPLPDLGGLTVGEARTRLADLGFVPDVRTLPLPGPSGD
69
+ AARVLRQGTPAGTVLPEGASVQLWTL
70
+ >PROKKA_01324
71
+ MSSARRDPLVGGIVDGRYRVVERLARGGMSTVYLAVDERLDRQVALKVMHPHLAEDPVLV
72
+ GRFEQEAKTTARLSHPHVVAVLDQGHTEAEDGDVLAYLVMEHVPGRTLRTVIRDRAPLSP
73
+ REALRFLRPLVDGLAAAHRAGLVHRDVKPENVLVRDDGRVTVADFGLSRAATAHTMAGQA
74
+ VVGTPAYLAPEHIAGAPADARSDVYAVGIILFELLTGRQPYTAATALQVAYRHVHERVPV
75
+ PSTLHPGLPEDLDDLVLWCTEPDPADRPAGAGELLHRIDAVAAGLDPDEPDRRPAEGPGT
76
+ DPAAAAPAADGLEGAAPDGDLPTRALDAGDHHATRVLPALAESALDDDVTDVIDTRAATH
77
+ GGDPRPAARPAEPVGPLAVDPAPADRHPGRGSRRRLRRAARRPALDLGQGTGRAAAIGAA
78
+ VTLLLTGVALLLGWTLGSGGLGVGGVAVVPDLDGLAREAAEERLTAAGFTAAVTARHDEL
79
+ RTEGTVVDSSPAAGEPAGRGAPVELTVSAGPAPVPVPDLTGVVIRQAHGVARDARFTVEV
80
+ AERRTDPAVPAGAVIEQHPAPGEQATPGTAVRVVLSEGRAVRPVPDMTGQDPETAHTTLA
81
+ DEGWDARVHRLPLPLSARGESRVLHQSPAAGTALPEGTAVHVWVG
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000143.fa ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_01687
2
+ MPDVTPPPPSRSWTRRSVLGGTGLAIAAGVAGCGRDEQAEQSSEGDEQATRLPAPDIITT
3
+ AQWGAMQPNYYLQTLNERPSYLVIHHTTTPNVTDGSREAAESIAQVVQNAHMGSANDWGD
4
+ TGQHFTVSRGGFAMEGRHGSRHALEGGQTFMLGVHALGFNAYALGIECEGLYMLNPPPQS
5
+ LYAGLVPLVAYICQQYELPPSRIIGHRDVTATSCCGDAFYAKLPILREDVRLSLASGEYH
6
+ VSEGFGADNLFDDAHVTPEYVEEERG
7
+ >PROKKA_01391
8
+ MPDVTPPPLPHSWTRRSVLGGTGLAIAAGVAGCGRDEQAEQSSEGDEQATRLPAPDIITT
9
+ AQWGAMQPNYYLQTLNERPSYLVIHHTTTPNVTDGSREAAESIAQVVQNAHMSPANDWGD
10
+ TGQHFTVSRGGFAMEGRHGSRHALEGGQTFMLGVHALGFNAYALGIECEGLYMLNPPPQS
11
+ LYAGLVPLVAYICQQYELPPSRIIGHRDVTATSCCGDAFYAKLPILREDVRLSLASGEYH
12
+ VSEGFGADNLFDDAHVTPEYVEEERG
13
+ >PROKKA_01191
14
+ MPEQSPTPSSRPWARRTVLGGTGLAIAAGVAGCSRPEAGEEAEETEAAPKRLPAPDILTT
15
+ AQWGALQPNYHLQTLDERPSYLVIHHTTTPNVTDGSREAAESIAKSIQNAHMSTLNDWGD
16
+ TGQHFTVSRGGFALEGRHGSRYTLEQGQTFMLGVHALGFNAYALGIECEGLYTLNPPPQS
17
+ LYAGLVPLAAYICQQYELPPSRIIGHRDVTATSCCGDAFYGKLPVLREDVRLSLATGEYH
18
+ VSEGFGADNLFDDAHVTPDYLQEQGY
19
+ >PROKKA_00038
20
+ MKHALPRHVQHAPVPPAAASPGRRAVLVGGLAAAGAAGAAAAGAVPAAAFAGPVVHSTAQ
21
+ WGARSPRSAAEVVRARPTRLVIHHMASPNTAETSLAHAYGLARACQQDHMGRGFDDSGQH
22
+ FTVSRGGHCLEGRAGSLAALRAGDRHVKGAHVSGQNTGKIGIECEGSYVTGLPTPAQYRA
23
+ LVQLAAHICRQYGIRPADIVGHGDLMATQCPGGAFHARLGVLRADVARTLATGRLSVSDP
24
+ SGRAASIPADPRRAATTTPSAAAPASRRVLGPGSRGADVKRVQALLTTAGHRVPRTGLYA
25
+ ARTTAAVRAFQRRSGLAQDGFTGPLTWAALEAAGRR
26
+ >PROKKA_01121
27
+ MPDHQILSSSWPRRAVLGGAGLAIAGTVAGCGTGGDAAQSTSADGSAASTGPRLPEPEIL
28
+ STIDWGARIPENWQQTLYEKPSYLVIHHTTTPNVTDGSRDAAIALAQRVQNQHINQQWGD
29
+ SGQQFTMSRGGFAMEGRHGSLYALQGGETFILGVHALGFNAYAVGIECEGFYMVSPPPQS
30
+ LYAGLVKLSAFICQQYELPPSRIIGHRDVVKTSCCGDAFYAKLPILREDVKRSLETGEYQ
31
+ ITEGFGADNLLDDAKINVENYEDFQKRS
32
+ >PROKKA_01616
33
+ MPDVTPPPLPHSWTRRSVLGGTGLAIAAGVAGCGRDEQAEQSSEGDEQATRLPAPDIITT
34
+ AQWGAMQPNYYLQTLNERPSYLVIHHTTTPNVTDGSREAAESIAQVVQNAHMSPANDWGD
35
+ TGQHFTVSRGGFAMEGRHGSRHALEGGQTFMLGVHALGFNAYALGIECEGLYMLNPPPQS
36
+ LYAGLVPLVAYICQQYELPPSRIIGHRDVTATSCCGDAFYAKLPILREDVRLSLASGEYH
37
+ VSEGFGADNLFDDAHVTPEYVEEERG
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000144.fa ADDED
@@ -0,0 +1,44 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_01779
2
+ MSTAPALPPLPGAPGGPALPSVEELLADAVAVAVPMRVRFRGTDLRHALLLRGPAGWGEF
3
+ SPFPEYGPHESAAWLAAAIEAGWQGWPAPVRETIPVNATVPAVDADDVEAVLARYGDGIT
4
+ AVKVKVAEHGPEGGLVPGGREADLARVRRVRALLPHAQVRVDANAGWTPAEAVDVLTELA
5
+ DVGLEYAEQPVPGITDLAEVRAELRARGVPTPIAADEAVRKAEDPLAVAAAGAADLIVVK
6
+ VQPLGGVRRAAAIVAAAGLPAVVSSALDTSVGIAGGAALAACLPSLPHACGLGTAALFEH
7
+ DVVAPAWRPRAGALPAPGERAPAPDPELLDRIRADGTRQAWWADRVRAAHAVLAAQG
8
+ >PROKKA_01486
9
+ MSTAPALPPLPGAPGGPALPSVEELLADAVAVALPMRVRFRGTDLRHALLLRGPAGWAEF
10
+ SPFPEYGPHECAAWLAAAIEAGWQGWPGPVRQTVPVNATVPAVAADDVEAVLARYGDGIT
11
+ AVKVKVAEHGPEGGLVPGGREADLARVRRVRALLPHAQVRVDANAGWTPAEAVDVLTALA
12
+ DVGLEYAEQPVPGITALAEVRAELRARGVPTPIAADEAVRKAEDPLAVAAAGAADLIVVK
13
+ VQPLGGVRRAAAIVAAAGLPAVVSSALDTSVGIAGGAALAACLPSLPHACGLGTAALFEH
14
+ DVVAPAWRPRAGALPAPGERAPAPDPELLDRIRADGTRQAWWADRLRAAHAVLAAQG
15
+ >PROKKA_01098
16
+ MRVRFRGTDARQALLLRGPAGWAEFSPFPEYGPAESSAWLAAAIEAGWQGWPAPVRDVVP
17
+ VNATVPAVEAEAVESVLARYGEGITAVKVKVAEHRPGGGLVPGSHSADLARVRRVRELLP
18
+ DAHVRIDANAGWTPAEAIAMLTDLADVGLEYAEQPVPGIKKLARVRRELRARGVSTPIAA
19
+ DEAVRKAEDPLAVAAAGAADLIVVKVQPLGGVRRAAAVVAAAGLPAVVSSALDTSVGIAG
20
+ GAALATHLPALPHACGLGTAALFDDDVVTPAWTPRQGVLEAPGERAPEPDPALLARVRAD
21
+ ERTHAWWRDRVAAAHAVLAAGGR
22
+ >PROKKA_01022
23
+ MTVPAAHDDADPRPGSALPPLPGAPGGPALPDVDELLEHAVAVTLPMTVRFRGTTERRAL
24
+ LLRGPAGWAEFSPFPEYGPAEASRWLAAAVEAGWQGWPAPVRSEVPVNATVPAVDAADVE
25
+ SVLARYGDGITAVKVKVAEHRPGGGLVDPTHAADVARVRRVRELLPEAAVRIDANAGWDE
26
+ DRAFAVLGALQDVGLEYAEQPVPGIAGLAALRSRLRAAGIATPIAADEAVRKETDPLAVA
27
+ QAGAADLIVVKVQPLGGVRRAAAIVAAAGLDAVVSSALDTSVGIAGGAALAAHLPSLPFA
28
+ CGLGTASLFAHDVVSPAWRPADGSLPAPGERAPEPDPALLAAARADAAEHAWWAERLRAA
29
+ HAVLAARGR
30
+ >PROKKA_01806
31
+ MSPAPGQAPVSVAAVRRHRHRAPLLHPFVTAARRTEAVEYVVVEVELSDGTVGQGSAAET
32
+ VAVTGEDAASIETAVDGVFGPALTGATGGLDGLLARLPAPARGATSARSAVDVAVHDAVA
33
+ RAAGVPLTALLAPAGTAVKQTLENDMTVSLEDPATMAARAAEAVAAGTRILKIKLGRDVA
34
+ EDRRRLHAVLEAAPQARLRLDANQGWSVEDAIAIISGMEDEGLPVDLVEQPVAAADVAGL
35
+ ARVRAAVTTPIMADEALWSSEDARRLIEAGAADLFNVKLAKTGGLADAVAIADLAAEHGI
36
+ GCMVGSMMEPRISIAAAVQLSLAHPAVTMVDLDAPLWFASDAPAGGYTQEGADLRLLPGE
37
+ GLALERLDPGTDPV
38
+ >PROKKA_01708
39
+ MSTAPALPPLPGAPGGPALPSIEELLADAVAVALPMRVRFRGTDLRHALLLRGPAGWAEF
40
+ SPFPEYGPHESAAWLAAAIEAGWQGWPAPVRQAVPVNATVPAVDAADVEAVLARYGDGIT
41
+ AVKVKVAEHGPEGELVPGSREADLARVRRVRALLPHAQVRVDANAGWTPTEAVDVLTALA
42
+ DVGLEYAEQPVPGITDLAEVRAELRARGVPTPIAADEAVRKAEDPLAVAAAGAADLIVVK
43
+ VQPLGGVRRAAAIVAAAGLPAVVSSALDTSVGIAGGAALAACLPSLPHACGLGTAALFEH
44
+ DVVAPAWRPRAGALPAPGERASAPDPELLDRVRADGARQAWWADRVRAAHAVLAAQG
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000159.fa ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_02070
2
+ MSTTTSITAAGLETMNGPEGCCTLSAGPVDSVEAERIASLLKALSDPTRLRLLSHVAAQG
3
+ CNSVCACDLTEPLGISQPTVSHHMKKLVDAGLLTREQKGRWAHYSVVPSAFAELRSFLDI
4
+ A
5
+ >PROKKA_01107
6
+ MDVKVYVPEFAVEFDTCQYVPMSMSGLSARDAALGYCTPLAREPITPAQAEGVSRMLKAL
7
+ ADPVRLRLMSMILSHEGAEACAMCDLTEGFDLSQSTLSHHLKVLHDAGLVDRDKRGVWVY
8
+ YKARTEAMDALRTLFSGDLAAPQLA
9
+ >PROKKA_00560
10
+ MTACSVPVSTAAAPVLADDCCSLADGPLGAEDAAELAVLLKALADPMRLRLLSHVAARGC
11
+ ADVCACDLTEELGIAQPTVSHHMKRLVDAGLLTREQRGRWAHYTVVPEAFARLRRVLVLG
12
+ >PROKKA_00743
13
+ MVATTTIPAPEDTDRPEGDDALGSVACCSLSAGPIDAAQAQRAAGMFKALADPMRLRLLS
14
+ HVAAQGCAAVCSCDLTEELGISQPTVSHHMKKLVEAGLLTREQRGRWAHYTVVPAAFAEL
15
+ GRMLELG
16
+ >PROKKA_00486
17
+ MTTTAPSPSDTCCAPAGPALLPAEHAARLAAVFKALADPTRVRVLAHVAASPEGTVCACH
18
+ LPEPLGISQPTLSHHLKTLTAAGLVTREQRGRWAHYTAVPAALDAARAFLADPAGA
19
+ >PROKKA_01998
20
+ MSTTTAITAAGLETMNGPEECCTLSAGPVDSVEAERIASLLKALSDPTRLRLLSHVAAQG
21
+ CNSVCACDLTEPLGISQPTVSHHMKKLVDAGLLTREQKGRWAHYSVVPSAFAELRSFLDI
22
+ A
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000199.fa ADDED
@@ -0,0 +1,33 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00040
2
+ MAKGVKPAGRAGGEGRRRPAPAPPADLPVPPETLFLATIPGATPSTWVERFTTRQRTVQL
3
+ VNHDDAAQLAHLAHDDAGQPRHFLPQLGYVRRRRDVSAEEFLRAGDVDPRHVHLVGVYSE
4
+ LPVVCVGRDHLLAAWDVDADGPVPPAELDPDEELDPARFAPAPSPEPMDAAELPGAGERM
5
+ ALEIAASGAGHVVLPMSVARMFGRKDVIVLPLASTLDDTVGLSRADREAAATRSALADEQ
6
+ ARAEAEAGAAVVDGADPAGHGDDDARHPVWDVALAWLKAADSELVQAFVGVARGRRGASS
7
+ R
8
+ >PROKKA_02053
9
+ MAKGVKPAGRAGGEGRRRPAPAPPADLPVPPETLFLATIPGATPSTWVERFTTRQRTVQL
10
+ VNHDDAAQLAHLAHDDAGQPRHFLPQLGYVRRRRDVSAEEFLRAGGVDPRHVHLVGVYSE
11
+ LPVVCVGRDHLLAAWDVDADGPVPPAELDPDEELDPARFAPAPSAEPMDAAELPGAGERM
12
+ ALEIAASGAGHVVLPMSVARMFGRKDVIVLPLASTLDDTVGLSRADREAAATRSALADEQ
13
+ ARAQAEAGAAVVDGADPAGQGDDDARHPGWDVALAWLKAADSELVQAFVGVARGRRGASS
14
+ R
15
+ >PROKKA_00360
16
+ MGPRRGLPEGEGPLSGARGGRGAGRQRASRGGPARSTRTGGRAGAKGGGPQRAGSGSRAG
17
+ GEGRRRAPSAPADLAAPPETLFLATIPGATPSTWVDRFTTRQRVVQLVNHDEASQLAHLA
18
+ HDDAGMPRHPLPQLGYVRRRRDVEAEEMLRAAGVDPRRVHLVGVYAELPVVCVGRDHLLA
19
+ AWDAEADGPVPLAELDSHEELDPARFAAAPVEDPLDSAELPGAGERMALEIAASGAGHVV
20
+ LPMSVARMFGRKDVVVLPLASALDDTVGMSRADREAAATRAEVEADAGDAGTAAAGPGEA
21
+ DDDAARHPGWDVALAWLKEADSELVQSFVGVARGRRGNSSR
22
+ >PROKKA_00301
23
+ MPAAPADLPTPPETLFLATIPGATPSTWVQRFSSRARTVQLVNHEEAQQAAHLAHDAAGA
24
+ PLHPLPQLGYVRWLRDAGVESVLRESGVDPRFVHVVGVYSELPVVCVGKEHLLAAWDLEA
25
+ DGPVPLAELDPAEHMDPARFAPEPGAASNPLDSAELPGAGERMALEIVASGVGHVVLPQS
26
+ VARVFGRKDVVVLPVACELDDVVGLSRADREAAATRAEVAEEGDGVVPDGADAPATTAPR
27
+ HPGWDVGLAWLKEQDSELVQSFVGVARGRRGGTSR
28
+ >PROKKA_00035
29
+ MKPAGRAGGEGRRRPAPAPPADLPVPPETLFLATIPGATPSTWVERFTTRQRTVQLVNHD
30
+ DAAQLAHLAHDDAGQPRHFLPQLGYVRRRRDVSAEEFLRAGDIDPRHVHLVGVYSELPVV
31
+ CVGRDHLLAAWDVDADGPVPPAELDPDEELDPARFAPAPSPEPMDAAELPGAGERMALEI
32
+ AASGAGHVVLPMSVARMFGRKDVIVLPLASTLDDTVGLSRADREAAATRSALADEQARAE
33
+ AEAGAAVVDGADPAGQGDDEARHPGWDVALAWLKAADSELVQAFVGVARGRRGASSR
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000276.fa ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00143
2
+ MAIENWQHDLNIGTVVRTANAFNAAGVHIIGRRRWNRRGAMVTDRYLHVRHHETVAAFTE
3
+ WAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSAEVRAASSAVLSIAQYGS
4
+ TRSINAGVAAGIAMHAWIRQHAAVP
5
+ >PROKKA_02157
6
+ MLDHYRYWSLEAIVADLDARRHPFHVAIENWQHDLNIGTVVRTANAFNAAGVHIIGRRRW
7
+ NRRGAMVTDRYLHVRHHETVAAFTEWAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFG
8
+ QEGPGLSAEVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQHAAVP
9
+ >PROKKA_00241
10
+ MGPGTSENSPETREKREEREGREEREVGVGPWEGPWPEDPRYDPELLRDGDRRNVVDGYR
11
+ YWTLEAIVADLDARRHPFHVAIENWQHDLNIGTVVRTANAFNAAGVHVIGRRRWNRRGAM
12
+ VTDRYLHVRHHATVEEFTAWAAAEGLPVLGVDLFPESVPLESFELPRECVLVFGQEGPGL
13
+ SEEVRAASAAVLSIAQYGSTRSINAGVAAGIAMHAWVRQHGGVPTSSS
14
+ >PROKKA_00175
15
+ MGSGEGVDAREVGREVGAPPWEGPWPEDPRYDPALLRDGDRRNVADRYRYWTVEAIVADL
16
+ DRTRHPFHVAIENWQHDLNIGTVVRTANAFNAAGVHIIGRRRWNRRGAMVTDRYLHVHHH
17
+ ETVEAFTAWAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSEEVRAASEAV
18
+ LSIAQYGSTRSINAGVAAGIAMHAWIRQHGGPAPV
19
+ >PROKKA_00151
20
+ MPREVGVGPWLGPWPEDPRYDPELLAHGDRRNVLDRYRYWRLEAIVADLDARRHPFHVAI
21
+ ENWQHDLNIGTVVRTANAFNAAGVHIIGRRRWNRRGAMVTDRYLHVRHHETVAAFTEWAA
22
+ GEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSAEVRAASSAVLSIAQYGSTRS
23
+ INAGVAAGIAMHAWIRQHAAVP
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000311.fa ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00213
2
+ MPIIVVDVMPKPEILDPQGKAINGALPRLGFTEFSQVRQGKRFELTVEGEVTDEILAQAR
3
+ TAAEEMLSNPVIEDVVNVAVLDEAEGAR
4
+ >PROKKA_02206
5
+ MPIIVVDVMPKPEILDPQGKAINGALPRLGFTEFSQVRQGKRFELTVEGKVTDEILAQAR
6
+ TAAEEMLSNPVIEDVVNVAVLDEAEGAR
7
+ >PROKKA_00173
8
+ MPIIVVDVMPKPEILDPQGKAINGALPRLGFTEFSQVRQGKRFELTVEGEVTDAVLDQAR
9
+ RAAEELLSNPVIEDVVNVAVLDEAEGAR
10
+ >PROKKA_00122
11
+ MPIIVVDVMPKPEILDPQGKAINGALPRLGFTEFSQVRQGKRFELTVEGEVTEEVLAAAR
12
+ TAAEEMLSNPVIEDVVNVAVLDEDAA
13
+ >PROKKA_00213
14
+ MPIIVVDVMPKPEILDPQGKAINGALPRLGFTEFSQVRQGKRFELTVEGEVTDEILAQAR
15
+ TAAEEMLSNPVIEDVVNVAVLDEAEGAR
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000340.fa ADDED
@@ -0,0 +1,20 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00261
2
+ MTTPAPVASAARARRRAARSGPRPQLRMGLNGFLVAWLLPNLVMAAVVAVLAVVPGLQAF
3
+ GSLTPLLTVVGVAGLVVGLPLCLLVNWAFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAG
4
+ ILPMLIPVIGFPAAVLMALGRTAARPLVRTVTPEPSPAEPA
5
+ >PROKKA_02274
6
+ MTTPAPVASAARARRRAARSGPRPQLRMGLNGFLVAWLLPNLVMAAVVAILAVVPGLQAF
7
+ GSLTPLLTVVGVAGLVVGLPLCLLVNWAFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAG
8
+ ILPMLIPVIGFPAAVLMALGRTAARPLVRTVTPEPSPAEPA
9
+ >PROKKA_00106
10
+ MGLNGFLVAWLLPNLVMAALVAVLAVLPGLQAFGSLTPLLTVVGIAGLVVGLPLCLLVNF
11
+ AFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAGILPMLIPVIGFPAAVLMALGRMAARPL
12
+ VQVVTPGQEAEARSAAQTASPADPEPSERAARGA
13
+ >PROKKA_00076
14
+ MTTPAPVKSTARARRKAARAVSGPRPRLRMGLNGFLVAWLLPNLLMAAVVLALTLIPSLQ
15
+ RFGTLTPLLTVVGIAGLVIGLPLCLLVNRAFRHVLNQWVHVLAYALVGMLYGLVVLAQGV
16
+ GGVLPMLIPVIGFPAAVLMGLGRLAARPLVDVVPGAEPRS
17
+ >PROKKA_00259
18
+ MTTPAPVASAARARRRAARSGPRPQLRMGLNGFLVAWLLPNLVMAAVVAVLAVVPGLQAF
19
+ GSLTPLLTVVGVAGLVVGLPLCLLVNWAFRHVLNQWVHVLAYALIGMLYGLVVLTQGAAG
20
+ ILPMLIPVIGFPAAVLMALGRTAARPLVRTVTPEPSPAEPA
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000341.fa ADDED
@@ -0,0 +1,35 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00262
2
+ MKLPSPAPSAPGEVHHSASSVPVDGVEAVFPALRQRALAPGGRLYGLAAAAAVGGLTLLD
3
+ PHARRGRERRALAELEAAVSGTVLAAETANALHTAAIADGEVAPSPAARALRGLGGLAVG
4
+ GAVAAVALRTAGLNDRIDGAVVRGLQRVGVPAPRVALAAAASLAMLLANEDARRTRRDAV
5
+ ELAVTGPAGLDEDPVDEVEPEATAELPVEVRVLLETLLDPALAEGRDLPGAEALRSQLPH
6
+ ARTVASVAEAIREAGEVPDWVPLVVQTDDDVRRAVPNDCVWPVRGRFASGSAGGHELELR
7
+ LQVIDGEIGALTVTLPADAEADSDAWDAFQEIESFPGVEDLAFHVDGDRRA
8
+ >PROKKA_02275
9
+ MKLPSPAPSAPGEVHHSASSVPVDGVEAVFPALRQRALAPGGRLYGLAAAAAVGGLTLLD
10
+ PHARRGRERRALAELEAAVSGTVLAAETANALHTAAIADGEVAPSPAARALRGLGGLAVG
11
+ GAVAAVTLRATGLNDRIDGALVRGLQRVGVPAPRVALAAAASLAMLLANEDARRTRRDAV
12
+ ELAVTGPAGLDEDPVDEVEPEATAELPVEVRVLLETLLDPALAEGRDLPGAEALRSQLPH
13
+ ARTVASVAEAIREAGEVPDWVPLVVQTDDDVRRAVPNDCVWPVRGRFASGSAGGHELELR
14
+ LQVIDGEIGALTVTLPADAEADSDAWDAFQEIESFPGVEDLAFHVDGDRRA
15
+ >PROKKA_00105
16
+ MRQNSPVPGSLPARYVDDPAAAFPALRQRALAPGGRPYGLLAAAVVGALTLVDPHRMGAA
17
+ ERRGLARTEAAASGAFVAAEAASSLRLAGLPGRVGPAAGGLAAGAATAALALSTVPLNDR
18
+ IDGALVRFLERAGASAPRAVLAGTAALSVLAGNESVRRERRNALEEAAWPAWDDLSEEEQ
19
+ SEPTAPLPVEVRVLLETLLDPALAEGRELPGAAALRAQLPHVRTVASMAEAIRDEDEVPD
20
+ WTPLVVETDGPVDRAVPHDHVWPVRGRFAVGEDGHEVELRLQVIDGELGALVITLPADED
21
+ ADPDAWDAFQELEAFPGVEDLTFQVDGERRD
22
+ >PROKKA_00075
23
+ METPRTPETRTDPPADRLAEPQHPAHADAPVVHDTAVPESERIERTVSTRTGETRPPVVR
24
+ TVVTESERIERPVVEVRDARVPGRLLWWIGGGTLAAGSLAALVRVLRERLATPEPTPLER
25
+ LADAGRGAGLPLALSLAGTAAGVGVSLRARRRRRTEEVLAAPAVPFLLGEAVSAEAGEDD
26
+ VDGLPPVNEASDAYPAGALETEALPLEVVVLLDTLLDPSLDEGRELPGAAALRAQLPHVR
27
+ TAASVAEEIREDGKVPDWTPLVVEEETGVARAIPNDMVWPVRGRFTTEDGHELELRLQVI
28
+ DGELGALVITLPEDVEDGVAAWDAFQELEAFPGVEELTFTVDGDRRP
29
+ >PROKKA_00260
30
+ MKLPSPAPSVPGEVHHSASSVPVDDAEAVFPALRQRALAPGGRLYGLAAAAAVGGLTLLD
31
+ PHARRGRERRALAELEAAVSGTFLAAETAGALHTAAIAEGEVAPSPAARALRGLGGLAVG
32
+ GAVAAVALRATGLNDRIDGAVVRGLQRVGVPAPRVALAAAASLAMLLANEDARRTRRDAV
33
+ ELAVTGPAGLDEDAVDEVEPEATAELPVEVCVLLETLLDPALAEGRDLPGAEALRSQLPH
34
+ ARTVTSVAEAIREAGEVPDWVPLVVETDDDIRRAVPNDCVWPVRGRFASGSAGGHELELR
35
+ LQVIDGEIGALTVTLPADAEADSDAWDAFQEIESFPGVEDLTFHVDGDRRV
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000353.fa ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00280
2
+ MPSYRARLQIGDLLPGHRPEEVMDLAEAAVQATHVLAAKDIEVVARVPRIVLRFTVPGSH
3
+ RAGEDAEAAEVARRMAEAVSGVAVTGRLDVLRRDGGRWVPVPAGLGR
4
+ >PROKKA_02295
5
+ MPSYRARLQIGDLLPGHRPDEVMDLAEAAVQATHVLAAKDIEVVARVPRIVLRFTVPGSH
6
+ RAGEDAEAAEVARRMAEAVSGVAVTGRLDVLRRDGGRWVPVPAGLGR
7
+ >PROKKA_00073
8
+ MPSYRARLQIGDLLPGHRPEEVMDLAEAAVQATHVLAAKDIEVVARVPRIVLRFTVPGSH
9
+ RAGEDAEAAEVARRMAEAVSGVAATGRLDVLRRDGGRWVPVPAGPGR
10
+ >PROKKA_00059
11
+ MPSYRARLQIGDVLPGHRPEEVLDTAEAAIGATHEVAAKDVEVVARVPRIVLRFTVPAAH
12
+ RAAEDAEAAAVAGRMAEAVADVATVGRLDVLRREGGRWLPVSAR
13
+ >PROKKA_00279
14
+ MPSYRARLQIGDLLPGHRPDEVMDLAEAAVQASHVLAAKDIEVVARVPRIVLRFTVHGSH
15
+ RAGEDAEAAEVARRMAEAVSGVAVTGRLDVLRRDGGRWVPVPAGPGR
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000357.fa ADDED
@@ -0,0 +1,20 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00288
2
+ MSVRVLAIGKKHEAWVVDGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRILGAV
3
+ GADEHLILLDERGTAFDSPGLARHLQSRFDVGAPVTMVIGGAYGVDARVHARADRVWSLS
4
+ PLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
5
+ >PROKKA_02310
6
+ MSVRVLAIGKKHEAWVVDGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRILGAV
7
+ GADEHLILLDERGAAFDSPGLARHLQSRFDVGAPVTMVIGGAYGVDARVHARADRVWSLS
8
+ PLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
9
+ >PROKKA_00066
10
+ MSVRVLAIGKKHEAWVSEGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRILGAV
11
+ GADEHLILLDERGTAFDSPGLARHLQSRFDVGAPVTVVIGGAYGVDARVHARADRVWSLS
12
+ PLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
13
+ >PROKKA_00045
14
+ MMVLMAVRVVAIGKRHESWVSEGITRYEKRLKKPWDLTWQLLPHSSRQEDAARAEESERI
15
+ LAKVGPDEQLILLDERGRGFDSPGLSAHLQGQFDLGRTVTLVIGGAYGVDASVHARADRV
16
+ WSLSGLVFPHQLVRLILAEQVYRAQEIAGGRPYHHA
17
+ >PROKKA_00294
18
+ MSVRVLAIGKKHEAWVVDGIDRYERRLKKPYDLSWRLLPHSARQEEAARTEESDRILGAV
19
+ GADEHLILLDERGAAFDSPGLARHLQSRFDVGAPVTMVIGGAYGVDARVHARADRVWSLS
20
+ PLVFPHQLVRLILAEQVYRAQEISAGRPYHHA
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000375.fa ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00314
2
+ MTASAPVPPVFADLAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQC
3
+ EVADPAARGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRI
4
+ FLMEDADRMTERATNVLLKAIEEPPARTIWMLCTPSPADVLPTVRSRCRLITLSIPAVEQ
5
+ VAELLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDAM
6
+ ALAATLAEVSKAEAESAAEARDAEELEALRRSLGLEPGEPVPPKLRHHVKRLEEDQTRRR
7
+ RRAVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRDEIEAYARGTAGDSAEVLARI
8
+ DAVTTTRERIAANVPEQLALEAMMLALLPRRVRTPRRR
9
+ >PROKKA_00029
10
+ MTAPAPAVFADLAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQCEV
11
+ ADPAARGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRIFL
12
+ MEDADRMTERATNVLLKAIEEPPARTIWMLCAPSPADVLPTVRSRCRLITLSIPAVEQVA
13
+ ELLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDAMAL
14
+ AATLAEVSKAEAESAAEARDAEELEALRRSLGLEPGEPVPPKLRHHVKRLEEDQTRRRRR
15
+ AVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRDEIEAYARGAAGDSAEVLARIDA
16
+ VTTARERIAANVPEQLALEAMMLALLPRRVRTPRRR
17
+ >PROKKA_00023
18
+ MTALPDAVPAVFADLAGQGSAVEQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQ
19
+ CEAPDPAARGCGRCHACRTVLAGTHPDVTVLATEAVTYRIEDVRSLVEAAQSTPATGRWR
20
+ IFLMEDADRMTERATNVLLKAVEEPPARTVWMLCTPSPADVLPTVRSRCRLVTLSIPAVE
21
+ DVADLLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLEATSVSDA
22
+ MALAATLADVSKAEAESSAEARDAEELETLRRSLGLEPGEPVPPKLRQHVKRLEEDQTRR
23
+ RRRSVRDSLDRAMIDVMGLFRDVLRVQLGAEGELINEHRRAEVEAYARGAAGDSAEVLAR
24
+ IDAVATARERIAANVPEQLALEAMMLALLPRRVRTPRRR
25
+ >PROKKA_00019
26
+ MTGAPDVYSDLAGQDAAVAQLRRAATEDRPTHAWLFTGPPGSGRSTAARAFAAALQCEQP
27
+ DPANRGCGACHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAAQSTPATGRWRIFLM
28
+ EDADRMTERATNVLLKAIEEPPPRTIWMLCSPSPADVLPTIRSRCRLVTLRIPAPEDVAA
29
+ LLHRRDGLDEATALMTARISQSHVGMARRLARDPEALARREDVLSLPLQATAVSDAMAMA
30
+ ARLAEVSHAEAESSAAARDAEELAALRRQLGVAEGEAVPPKLRQQVKRLEEDQSRRRTRV
31
+ TRDALDRAMIDVIGLFRDVLRVQLGAGGDLVNEHRRAEIERYAAGAAGSSAEVVARIDAV
32
+ HLARERLGQNVPEQLALEAMMLALLPARVRTPRGRR
33
+ >PROKKA_00321
34
+ MTAPAPAVFADLAGQEAAVAQLRRAAAEDRPTHAWMFTGPPGSGRSTAARAFAAALQCEV
35
+ ADPAARGCGECHACRTVLGGTHPDVTVLATEAVSYRIEDVRALVEAGQSTPATGRWRIFL
36
+ MEDADRMTERATNVLLKAIEEPPARTIWMLCAPSPADVLPTVRSRCRLITLSIPAVEQVA
37
+ ELLHRRDGLDRETALTTARISQSHVGMARRLARDPEALERRERILSLPLQATAVSDAMAL
38
+ AATLAEVSKAEAESAAEARDAEELEALRRSLGLEPGEPVPPKLRHHVKRLEEDQTRRRRR
39
+ AVRDSLDRAMIDVMGLFRDVLRVQLGADGELINEHRRDEIEAYARGAAGDSAEVLARIDA
40
+ VTTARERIAANVPEQLALEAMMLALLPRRVRTPRRR
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000384.fa ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00324
2
+ MPTALVIAAAGAGTRLGAGLPKALAPLADGRTLLRHCLESVAAARAAGLDLDAVVVLTPP
3
+ AGADAGRVAAEVDAGPRLDVPVHCVPGGAERADSVRAGLAAASHALADLAPAGAPRRVLV
4
+ HDAARALTPPSVFGAVTAALETGAVAAIPGLPLTDTVKQVTPGRGGVDVVAATPARAGLR
5
+ AIQTPQGFDLDTLLAAHEAVRTDPTLDAAALTDDAMVMEAAGHEVVVVTGDPAAFKVTAP
6
+ ADLDLARLELARRAPQEEAPMDQPARPAAAPAPLPRVGIGTDVHAWAPEDAPRPLWLGGI
7
+ HWPGERGVAATSDGDVAAHAACNALLSAAGLGDLGAVFGVDRPEMADASGADMLREVLRL
8
+ LTEAGLAVGNVAVQVVAPRPKVGARRAEMEAALSAALGGAPVSVSAATTDRLGFIGRKEG
9
+ LVGIATALVIPAA
10
+ >PROKKA_00039
11
+ MPTALVIAAAGAGTRLGAGLPKALAPLADGRTLLRHCLESVAAARAAGLGLDAVVVLTPP
12
+ AEADAGRVAAEVDAGPRLDVPVHCVPGGAERADSVRAGLAAASGALADLAPAGAPRCVLV
13
+ HDAARALTPPSVFGAVTAALGTGAVAAVPGLPLTDTVKQVTPGRGGVDVVAATPARAGLR
14
+ AIQTPQGFDLDTLLAAHEAVRTDPTLDAAALTDDAMVMEAAGHEVVVVTGDPAAFKVTAP
15
+ ADLDLARLELARRAPQEEAPMDQPARPAAAPAPLPRVGIGTDVHAWAPEDAPRPLWLGGI
16
+ HWPGERGVAATSDGDVAAHAACNALLSAAGLGDLGAVFGVDRPEMADASGADMLREVLRL
17
+ LTEAGLAVGNVAVQVVAPRPKVGARRAEMEAALSAALGGAPVSVSAATTDRLGFIGRKEG
18
+ LVGIATALVIPAA
19
+ >PROKKA_00013
20
+ MPTALVIAAAGAGTRLGAGMPKALVPLADGRTLLRHCLDSVAAARAAGAAVDAVVVLAPP
21
+ AEEDAARVAAEVDAGPGLGAPVACVPGGAERADSVRAGLAAAADALNALGPAAGPRRVLV
22
+ HDAARALTPPAVFAAVEAALDAGAVAVVPGIAVTDTVKQVAPGPGGAEVVTTTPPRAALR
23
+ AVQTPQGFDLDALLAAHEAVRADPALDAAALTDDAMVMEAAGHPVAVVAGDAAAFKVTAP
24
+ ADLELARLELARRADAPTPEEDPAMDQYGTAPGTGPEADAATDPAGPRPGAALPRVGVGT
25
+ DVHRWAPEDAPRPLWLGGVHWPGERGVAATSDGDVAAHAACNALLSAAGLGDLGAVFGVD
26
+ RPEMADASGTAMLAEVLRLLTEAGLAVGNVAVQVVAPRPKVGTRRAEMEAALSAALGGAP
27
+ VSVSAATTDRLGFIGRGEGLVGIATALVAPTA
28
+ >PROKKA_00009
29
+ MPTALVIAAAGSGTRLGAGVPKALAPLTDGRPLLDHCLESVAAARATGLGLDALVVLVPP
30
+ AADHARAVADVVARHETAVGAPVTCVPGGVERADSVRAGLAAADAALADRGHPAGQGVRH
31
+ VLVHDAARAFTPPAVFEAVAGALVSGEVAAVPGLPLTDTVKEVTGADGREVVVATPARSA
32
+ LRAVQTPQGFDLDVLLAAHAAAQADPAADAAALTDDAMAMEAAGHAVVVVPGDERAFKVT
33
+ SPADLEAAARILAVRDAQSGPGTPSPAAVPAAPPLPRTGIGTDVHRWAPDDAPRPLWLGC
34
+ VEWPGQNGVAATSDGDVAAHAACNALLSAAGLGDLGAVFGVDRWEMRGASGAAMLAEVLR
35
+ LVTEAGCRIGSVAVQVVAPRPKVGTRRAEMEAAMSAALGGAPVAVSAATTDGLGFIGAGE
36
+ GLVGLATALVVPAA
37
+ >PROKKA_00331
38
+ MPTALVIAAAGAGTRLGAGLPKALAPLADGRTLLHHCLASVATARAAGLALDAVVVLTPP
39
+ AEADAGRVAAEVDAGPRLDVPVHCVSGGAERADSVRAGLAAASYALADLAPAGAPRRVLV
40
+ HDAARALTPPSVFGAVTAALETGVVAAVPGLPLTDTVKQVTPGRGGVDVVAATPARAGLR
41
+ AIQTPQGFDLDTLLAAHEAVRTDPTLDAAALTDDAMVMEAAGHEVVVVTGDPAAFKVTAP
42
+ ADLDLARLELARRAPREEAPMDQPARPAAAPAPLPRVGIGTDVHAWAPEDAPRPLWLGGI
43
+ HWPGERGVAATSDGDVAAHAACNALLSAAGLGDLGAVFGVDRPEMADASGADMLREVLRL
44
+ LTEAGVAVGNVAVQVVAPRPKVGTRRAEMEAALSAALGGAPVSVSAATTDRLGFIGRREG
45
+ LVGIATALVVPAA
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000419.fa ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00374
2
+ MTSEHTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH
3
+ REVAAPTRWAVLALGTLTWALSALWDLTPLGALAFALAGALEVMWSRHARAVVTLLVLTV
4
+ GSAAGALVFVTDPQALWVYVGMGALLTGVACVTIPVSRISFDLMRLQDQRAEQERAASLD
5
+ AERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTDTDAAQRELDEAQQTLRQTMAETKAL
6
+ AQDGHTLTLRGELANSVALLEATGITVTTDDDGGPRGEEFEHVAGVVIREGTTNILRHSD
7
+ ARRVEISLAPGHVVISNDGAAGVSAEDHTGGLDNLRSRLAGVGGRLDVSCVDGRFTLGAR
8
+ WEADEEESV
9
+ >PROKKA_01001
10
+ MTPPSPLAPEPVPDRAPAQDPGSGHAPSPASAALPPGHRPTGALPVAPGFDRDLHRLWWY
11
+ TAAGLLSAVVVVAGFLVFVMARRLAVAEGPDASPLAVTVLVAGIAAAVAAAVGQTLATLR
12
+ LRRAWEEEREPLRRTAVAALLPALLVALTPLAVPSLSAWPVLSLWLSVCLIAPQAAAHVR
13
+ TAVLTSGAAATLGLTALALVRTPAGPADSAVGVLLWWAMVLLVVLPTVWVWRVAVRLEEA
14
+ RAQAGELAVARERLRFAADLHDVQGHHLQVIALQAELAGRLLEKGRTDQAGAALRDVREQ
15
+ AAEALGETRALVRGLRQVSVASEIENAREVLAATGAVVEVDVDPAAARLAREAARLVGLA
16
+ VREATTNALRHAEPRRVRLALGPADGAAGGVRLTVTNDGARPPAAPPGTGLAGLAARAAE
17
+ VSGRLSAGPDDDGGFRLELTVPSSSGATTRTDPTTTTGEDA
18
+ >PROKKA_02588
19
+ MTSEPTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH
20
+ REVAAPTRWAVLALGTLTWALSALWELTPLGALAFALAGALEVMWSRHARAVVTLLVLTV
21
+ GAAAGALVFVTDPPALWVYVGMGALLTGVACVTIPVSRTSFDLMRLQDQRAEQERAASLD
22
+ AERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTDTDAARRELDEAQQTLRQTMAETKAL
23
+ AQDGHTLTLRGELANSVALLEAAGITVTTDDDGDPRREEFEHVAGVVIREGTTNILRHSD
24
+ ARRVEISLAPGHVVISNDGVAGAPAEDHTGGLDNLRSRLAGVGGRLDVSCGDGRFTLEAR
25
+ WEADEEETV
26
+ >PROKKA_01178
27
+ MSPAGGPPAPARPTVGTAEHDPAVLPLHLWPSTMGFAGVWLISFGFVLVELLRRAFTPGD
28
+ GRGEAILGVAAIAVFILVYLAAFVVPRPVRAWPAWANTVLTWFVLAGCVAVLTRILGVHA
29
+ LLYSPFLVATWIFPHRLRVGLTGAGATMAAALATGLLFFPGDPALPVVLGNLAVLLVVLV
30
+ GMRLAIARDDRVVEMTHELDLAGQRERLGRDLHDILGHSLTTINVKTQLVHRLIDTDPAR
31
+ AKEEAAEVIALSRTALAEARAAVAELAAPELGGQLSLSVGALRDAGMAVEAPPPGAVTEV
32
+ PQRRRALAAWIVREAVTNVLRHAGARRVRISLDAHHVAVLDDGAGLPAAVVAGVGPRTLA
33
+ ERAAAEGARLEVGPGLGGAGTGVAVHWGGTTPEAARGVLPATEGRMDA
34
+ >PROKKA_00381
35
+ MTSEHTSETRRLRSRTSFVLLAVFGVAAIVALLTSAVEPWPPLVLAPGLIAGLWLLSQWH
36
+ REVAAPTRWAVLALGTLTWALSALWDLTPLGALAFALAGALEVMWSRHARAVVTLLVLTV
37
+ GSAAGALVFVTDPQALWVYVGMGALLTGVACVTIPVSRISFDLMRLQDQRAEQERAASLD
38
+ AERLRFSQDLHDIQGHALHVVKLKIAVAQRMLSTDTDAAQRELDEAQQTLRQTMAETKAL
39
+ AQDGHTLTLRGELANSVALLEATGITVTTDDDGGPRGEEFEHVAGVVIREGTTNILRHSD
40
+ ARRVEISLAPGHVVISNDGAAGVSAEDHTGGLDNLRSRLAGVGGRLDVSCVDGRFTLGAR
41
+ WEADEEESV
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000421.fa ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00379
2
+ MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
3
+ RHEQHWRALLGEHAENPPRPSLHRILLRWLARIFGSVFVLALAQRAESDTPYAEDQDAPE
4
+ GMVADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
5
+ FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG
6
+ MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
7
+ SGALIPILPYIFGMSGLWALGLAAAMVGVALLFTGGVVGLLSGSSPLARGLRQLAIGFGA
8
+ AAVTYVLGLLFGANVG
9
+ >PROKKA_00103
10
+ MSAAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
11
+ RHEQHWRILLGEHAENPPRPSFRRVLLRWLARIFGSVFVLALAQRAESDTPYEKDQDAPE
12
+ GMAADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
13
+ FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG
14
+ MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
15
+ SGALIPILPYIFGMSGLWALGLAAAMVGAALLFTGGVVGLLSGSSPLARGLRQLAIGYGA
16
+ AAVTYVLGLLFGANVG
17
+ >PROKKA_02576
18
+ MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
19
+ RHEQHWRALLGEHAENPPRPSVHRILLRWLARIFGSVFVLALAQRAESDTPYAKDQDAPE
20
+ GMVADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
21
+ FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELTLVYLARG
22
+ MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
23
+ SGALIPILPYIFGMSGLWALGLAAAMVGVALLFTGGVVGLLSGSSPLARGLRQLAIGYGA
24
+ AAVTYVLGLLFGANVG
25
+ >PROKKA_02448
26
+ MSPAHAATPAALPEPTREQVRRWRRYLADEIAEGQIYRDIAASKDGVERDILIGLAEAEK
27
+ RHEEHWRALLGEHAAHPPRPSVHRILLRALARVFGSVFVLALAQRAESDTPYAKDQDATE
28
+ HMAADEQIHEEVVRGLASRGREQLAGSFRAAVFGMNDGLVSNLALVMGIGATGVASSVVL
29
+ FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAEHLDLDRNELELVYLARG
30
+ MTPEDAKHRALERLGYLSCDCNPQFSARPDGSKGPVDHSESFAEIGSAWGASLSSFCFFA
31
+ SGALIPILPYLFGMTGLGALVVAAVLVGIALLFTGGVVGLLSGSSPLWRGLRQLMIGYGA
32
+ AAVTYLLGLLVGGSIG
33
+ >PROKKA_00385
34
+ MSPAHTATPAARPEPTREQVRRWRRYLADEIAEGQIYRDIAARKDGVERDILLGLAEAER
35
+ RHEQHWRALLGEHAENPPRPSLHRILLRWLARIFGSVFVLALAQRAESDTPYAEDQDAPE
36
+ GMVADEAIHEEVVRGLAARGREQLAGNFRAAVFGMNDGLVSNLALVMGIGATGVAPSVVL
37
+ FTGVAGLLAGALSMAAGEYVSVRSQRELLEASSPTQITLEAAQHLDLDHNELKLVYLARG
38
+ MTPEDAEHRALERLGYLTCDCNPQFSARPDGSQGPVDHSDSFAEIGSAWSASLSSFAFFA
39
+ SGALIPILPYIFGMSGLWALGLAAAMVGVALLFTGGVVGLLSGSSPLARGLRQLAIGFGA
40
+ AAVTYVLGLLFGANVG
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000430.fa ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00391
2
+ MPAASDAPTPAPRRGRLAPSGDPTPVENVATHLQEGWNRWHRARALRAGNVPTVMAFTGY
3
+ GSTSWVRILSRVVIASDEEFMNGRRLSKVVADGVRGWRNFVAPPMAYAEVEVQVGDLRTT
4
+ VRTDRMGVVDVVLDVELEPGWQTATLHVGGQEEHAVMDLYICEPGARIGLVSDIDDTVVV
5
+ TSLPRPLLAAWNSFVIDEHARTPTPGIAVLLRRIAELEPKAPVLYLSTGAWNVAQTLTRF
6
+ LGRNLYPLGALLLTSWGPTRDRWFRSGQEHKRVQLERLAEQFPDIQWILVGDDGQHDPEI
7
+ YAEFAQRHPDRVKAIVIRQLTPSQALLAGGRAEDTRRSTPGIPWCYGPDGATLSNQLEDL
8
+ GILPVEFVDVQPEAWREDILGDDEAPATLDAAAQRDDRSTDEEAAR
9
+ >PROKKA_00115
10
+ MPAASDAPTPAPRRGRLAPSGDPTPVENVATHLQEGWNRWHRARALRAGNVPTVMAFTGY
11
+ GSTSWVRILSRVVIASDEEFMNGRRLSKVVADGVRGWRNFVAPPMAYAEVEVQVGDLRTT
12
+ VRTDRMGVVDVVLDVELEPGWQTATLHVGGQEEHAVMDLYICEPGARIGLVSDIDDTVVV
13
+ TSLPRPLLAAWNSFVIDEHARTPTPGIAVLLRRIAELEPKAPVLYLSTGAWNVAQTLTRF
14
+ LGRNLYPLGALLLTSWGPTRDRWFRSGQEHKRVQLERLAEQFPDIQWILVGDDGQHDPEI
15
+ YAEFAQRHPDRVKAIVIRQLTPSQALLAGGRAEDTRHSTPGIPWCYGPDGATLSNQLEDL
16
+ GILPVEFVDVQPEAWREDILGDDEAPATLDAPGQRDGRPADEEAAR
17
+ >PROKKA_02565
18
+ MSAVSDAAPVSPRRTRLAALGDPTPVENVATHLQEGWNRWHRSRALRAGHVPTIMAFTGY
19
+ GSTSWVRILSRVVIAPDEEFLNGRRISKVVADGVRGWRNFVAPPMAYAEVEVEVGGTRTT
20
+ VRTDRMGVVDAVLDVEMEPGWRTATLHVGDDEHVTMDLYICHPDARIGLVSDIDDTVVVT
21
+ SLPRPLLAAWNSFVIDEHARTPTPGMAVLLRRVAELEPKAPVLYLSTGAWNVAQTLTRFL
22
+ GRNLYPLGALLLTSWGPTKDRWFRSGQEHKKTQLERLAEQFPDIKWILVGDDGQHDPEIY
23
+ ADFAQRHPDRVAAIVIRQLTPSEALLAGGRAEDTRRSTPGIPWCYGPDGASLSNQLEDLG
24
+ ILPVGFVDVQPEGWKEDILGDDEVLSAAEHGAAALGDEADAPDTAAEPRVPAGEAAVGDG
25
+ AADEAEAAEAGGSR
26
+ >PROKKA_02436
27
+ MPASESASIAAQNDPARRQRLAAAGGPTPAENVATHLQEQWNRWHRSRALRRGFVPTVMA
28
+ FTGYGTTSWVRVLSRVVLAKDEDFLNGRRLSKVVADGVHGWRNFVAPPMAYAEVEVEVGD
29
+ LVTTVRADRMGVVDVVLDVELEPGWRTAVLRVGDEEEVTTDLYIASPDAKVGLVSDIDDT
30
+ VVVTSLPRPLLAAWNSFVIDEHARTPTPGMAVLLRRIAAAEPMAPVLYLSTGAWNVAQTL
31
+ TRFLGRNLYPLGALLLTSWGPTKDRWFRSGQEHKVTQLERLAQQFPDLQWILVGDDGQHD
32
+ PEIYADFATKHPDKVKAIVIRQLTPSEALLAGGRAEATRHSTPGIPWCYGPDGAALSNQL
33
+ EDLGILPVDFVDVHPEGWLEDILGEDEASAAGRDGDEHGVHGGRADQDEARDVDVSAQD
34
+ >PROKKA_00397
35
+ MPAASDAPTPAPRRGRLAPSGDPTPVENVATHLQEGWNRWHRARALRAGNVPTVMAFTGY
36
+ GSTSWVRILSRVVIASDEEFMNGRRLSKVVADGVRGWRNFVAPPMAYAEVEVQVGDLRTT
37
+ VRTDRMGVVDVVLDVELEPGWQTATLHVGGQEEHAVMDLYICEPGARIGLVSDIDDTVVV
38
+ TSLPRPLLAAWNSFVIDEHARTPTPGIAVLLRRIAELEPKAPVLYLSTGAWNVAQTLTRF
39
+ LGRNLYPLGALLLTSWGPTRDRWFRSGQEHKRVQLERLAEQFPDIQWILVGDDGQHDPEI
40
+ YAEFAQRHPDRVKAIVIRQLTPSQALLAGGRAEDTRHSTPGIPWCYGPDGATLSNQLEDL
41
+ GILPVEFVDVQPEAWREDILGDDEAPATLDAAAQRDGRSADEEAAR
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000435.fa ADDED
@@ -0,0 +1,46 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00397
2
+ MSSRPAAPRLLRPVPLPLWLQGVVEALVTAMISLLAVMVPTLAVWATGGFERPTIEGAVQ
3
+ VGGVLWLALHAVPVTVTTAMPTAPDHLITGTAWLVPWGLTLLPLALSWRAGRRLARASYR
4
+ DQAWQAFVGAVGAYALVGLAVAFLPGTDELTAHPAPAALLPALLFGVAALAGARREAGTW
5
+ AHLIGLDLTERISRRSQYERWAGSYAWSVVRAAAVAVLALTGLNALLVAGRLAVEWTAVV
6
+ TVAEAIGGGPLGGLLLALLQIGWLPTFTAWSIAWTAGPGFSVGADSLYSVFGATPATAPA
7
+ LPALGALPGTWSPWQLLLLAVPIGAGAVAGVWLLREGENHLDDWLHTRHGSRAVSLTLST
8
+ LALAVLTGLLTGLLLLVPLALTSGTLGLGALTDLGSHVWAVSAAVAGWVALGCAAGYLTA
9
+ LAVAGHRDGTTTVPRSGDRASGLRDRPSPRRARD
10
+ >PROKKA_00121
11
+ MSSRPAAPRLLRPVPLPLWLQGVVEALVTAMISLLAVMVPTLAVWATGGFERPTIEGAVQ
12
+ VGGVLWLALHAVPVTVATAMPTAPDHLITGTAWLVPWGLTLVPLALSWRAGRRLARASYR
13
+ DQAWQAFVGAVGAYALVGLAVAFLPGTDELTAHPAPAALLPALLFGVAALAGARREAGTW
14
+ AHLIGLDLTERISRRSQYERWAGSYAWSVVRAAAVAVLALTGLNALLVAGRLAVEWTAVV
15
+ TVAQAIGGGPLGGLLVALLQIGWLPTFTAWSIAWTAGPGFSVGADSLYSVFGATPATAPA
16
+ LPALGALPGTWSPWQLLLLAVPISAGVVAGVWLLREGENHLDDWLHTRHGSRAVSLTLST
17
+ LALAVLTGLLAGLLLLVPLALTSGTLGLGTLTDIGPHVWAVCAAVAGWVALGCAAGYLTA
18
+ LAVAGHRDGTTTVPRSGDRASGLRDRPSPRRARD
19
+ >PROKKA_02560
20
+ MTALLSLLAVMIPTLVVWATGGFQRPTIEGALQVGGTLWLALHAVPVTVATVLPTAEGHV
21
+ LSGTAWLVPWGLTLIPLLLSWRAGRRLARASYRDQAWQAFAGAVVGYALAGLTVAFLPGT
22
+ PELRVSPWAAALLPALLFGIAALAGARREAGTWAHLIGLDLTERIARRSQYERWAGSYAW
23
+ SVVRAAVVALLVLAALSALLVAVRLAVEWPAVVTLAQAIDAGPFGGLLLAVLQIGWLPTL
24
+ TGWAIAWTAGPGFSVGSDSLYSVFGATPAAAPALPALGALPAAWAPWHPLFLAVPIAAGV
25
+ AAGVWLLREGENHLDDWLDARTGHRAVSLALSTLALAVLTGLLAGLLLLVPLALTSGTLG
26
+ VGTLTDIGANVWAVCAAVAGWVALGCAAGYLVALALAGRRFIPPAEAAVAAERPRPRRSR
27
+ D
28
+ >PROKKA_02431
29
+ MSPRVPSLLRPVPLPLWLQGVVEALVTALTSLALVLVPTLAVWITGGFSSTRIEDVLQTG
30
+ GALWLGLHAVPLAVTTVVAQADTPTVTGTVWLVPWALTALPVWLSWRAGRRLARASYREQ
31
+ AWQALAGAVAAYAVVALACALLPGEGRITVHPLPSVLLPCLLFTTSAVAGARREAGTWAH
32
+ LIGLDLTERIARRSQYERWAGTYAWSVLRGAGVGLAALAGLHALLVTVAVLVRWPRIIEV
33
+ QQMVGAGPVGGLMLALLEIGWLPTFTAWAVAWTAGPGFAVGADGHYSVFGTTPAPVPALP
34
+ LLEALPAPWAPWHPAFLLVPVLAGAVAGWWLLREGENHLDDWIDSRITARWASLTLSTLA
35
+ LALLLGLVSGVAVLVPLALTNGTLGVGSMREIGSNAPLVALAVAGWMALGCALGYLVALA
36
+ VVDRPVRGRRRISLPLPGSAPRAVTGRARRLPPRRLPRGVADAEADEPEVAAPAAAREEI
37
+ PGRETPAQETPSEEPPAAARPAPRRAGAPRVPRVPRPAPRRARD
38
+ >PROKKA_00403
39
+ MSSRPAAPRLLRPVPLPLWLQGVVEALVTAMISLLAVMVPTLAVWATGGFERPTIEGAVQ
40
+ VGGVLWLALHAVPVTVATAMPTAPDHLITGTAWLVPWGLTLVPLALSWRAGRRLARASYR
41
+ DQAWQAFVGAVGAYALVGLAVAFLPGTDELTVHPAPAALLPALLFGVAALAGARREAGTW
42
+ AHLIGLDLTERISRRSQYERWAGSYAWSVVRAAVLAVLALTGLNALLVAGRLAVEWTAVV
43
+ TVAEAIGAGPLGGLLLALLQIGWLPTFTAWSIAWTAGPGFSVGADSLYSVFGATPATAPA
44
+ LPALGALPGTWSPWQLLLLAVPIGAGAVAGVWLLREGENHLDDWLHTRHGSRAVSLTLST
45
+ LALAVLTGLLTGLLLLVPLALTSGTLGLGTLTDIGSHVWAVCAAVAGWVALGCAAGYLTA
46
+ LAVAGHRDGTTTVPRSGDRASGPRDRPSPRRARD
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000501.fa ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00479
2
+ MVSLSAPRSTGPLVLRLASSPRPALVQEPGAPDEPGAVDQRIELSGRVTVNWAAKFAGLL
3
+ GAEGIGAGDAVALDLPVHWLSHALALGVLCAEAEPALEGDSPAAVLTDRPEAWPDPSVAV
4
+ FAVALPRGLEPEFDGPAVDPAVVDVAAEIRAQPDALPGPVDHVRPASIPAGADVAPDDDG
5
+ PRPRLTWAGVRAALEAWDAGRAVTVRP
6
+ >PROKKA_00197
7
+ MVSLSAPRSTGPLVLRLASSPRPALVQEPGAPDEPGAVDQRIELSGRVTVNWAAKFTGLL
8
+ GAEGIGAGDAVALDLPVHWLSHALALGVLCAEAEPALEGDSPAAVLTDRPEAWPDPSVAV
9
+ FAVALPRGLEPEFDGPATDPAVVDVAAEIRAQPDALPGPVDHVRPASIPAGTDVAPDDDG
10
+ PRPRLTWAGVRAALEAWDAGRAVTVRP
11
+ >PROKKA_02468
12
+ MVSLSAPRSTGPLVLRLASSPRPALVQEPGAPGEHGAVDQRIELSGRVTVNWAAKTAGLL
13
+ ADEGLGPGDPVALDLPAHWLSHALALGVLCAGAEPADDGAAPAAVLTDRPERWTDPATAV
14
+ FAVALPRGLELPTGGAVADPSVVDVAAEILGQPDALPGPVDHVRPEALPAADVAAADGDA
15
+ RTDEDQDDDGPRPRLTWAGMRAVLQAWDAGRAVQVRP
16
+ >PROKKA_02352
17
+ MVSLSAPRPDGPLVTRLASSPRPALVQEPAPAGEAAGAAHGAVDQRIELSGSVTVNWAAK
18
+ AAGLLLDEGVAPGDAVLLDLPDHWLSRALALGVLCAGARPAFVAGPADRAQEAPDDAAAV
19
+ LTDRPEHWDDPVLTVVAVRLPRGIEPDFGDDDAGDPSVVDLAAEIRAQPDALPGRVDHVT
20
+ VDAVPADPADAAGPLTEGGVGVGRARLDAPALRASLEAWDAGRAAHVPA
21
+ >PROKKA_00479
22
+ MVSLSAPRSTGPLVLRLASSPRPALVQEPGAPDEPGAVDQRIELSGRVTVNWAAKFAGLL
23
+ GAEGIGAGDAVALDLPVHWLSHALALGVLCAEAEPALEGDSPAAVLTDRPEAWPDPSVAV
24
+ FAVALPRGLEPEFDGPAVDPAVVDVAAEIRAQPDALPGPVDHVRPASIPAGADVAPDDDG
25
+ PRPRLTWAGVRAALEAWDAGRAVTVRP
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000517.fa ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00501
2
+ MAERVEPAHGEDGGAVAAPQPHRPRLPFWASLLLNVVVALAVVAVVQALWVKVYSVPSGS
3
+ MENTLEVGDRMLVNRTAYPDGAADAQDVVVFTANEDWAHPMPPEGAVENAVRTFGDLTGI
4
+ GRSHEQALVKRVIGTAGQTVECCTAEGAVTVDGEPLDEPYIHNDLPFIRDELDCESEVMS
5
+ ARCFGPVTVPEDSMLVLGDHRSNSADSVIACRGIPADQAGDCARFVTREDIVGEVFVTVW
6
+ PPTHWGGH
7
+ >PROKKA_00222
8
+ MAERVEPAHGEDGGAVAAPQPHRPRLPFWASLLLNVVVALAVVAVVQALWVKVYSVPSGS
9
+ MENTLEVGDRMLVNRTAYPDGMADAQDVVVFTANEDWAHPMPPEGAVENAVRTFGDLTGI
10
+ GRSHEQALVKRVVGTAGQTVECCTAEGAVTVDGEPVDEPYIHNDLPFIRDELDCESEVMS
11
+ ARCFGPVTVPEDSMLVLGDHRSNSADSVIACRGIPADQAGDCARFVTREDIVGEVFVTVW
12
+ PPTHWGGH
13
+ >PROKKA_02448
14
+ MAERVEPVRGEDGDDGSVAAPERRRSRLPGWASVLLNVVVAIAVVAVVQALWVKVYSVPS
15
+ GSMEQTLEVGDRMLVNRTAYPDGMAASQDVVVFNANEDWAQPLPPEGPVENAVRTFGDIT
16
+ GIGRSHDQALVKRVVGTEGQTVECCTSEGRVTVDGQPLDEPYLHNDLPFAPGRLDCESDV
17
+ MSARCFGPITVPEDSMLVLGDHRSNSADSVIGCRGLPAEQAEGCARFVTREDVVGEVFVT
18
+ IWPPSNWGGH
19
+ >PROKKA_02332
20
+ MAHTPDAVPARDEAACDEAVRDDAAPAPASSAAAPGRRRRVQLPFWASVLLNVAVALLVV
21
+ SVVQALWVKVYSVPSGSMEQTLQVGDRMLVNRTAYPDGVAERQDIVVFDANETWGVDTVG
22
+ EEGPVEGAVRTFGDLTGIGRSHENALVKRVIGLPGETVECCTSQGAVTVGGTPLEEDYLY
23
+ EDLPFVPGTLDCTTTPRSSRCFGPVTVPERSMLVMGDHRSNSADSVYQCRGLTAEQAGDC
24
+ AHFVRDEDVVGRVFSTVWPPSNWSGH
25
+ >PROKKA_00500
26
+ MAERVEPAHGDDVDGGAVAAPQPHRPRLPFWASLLLNVVVALAVVAVVQALWVKVYSVPS
27
+ GSMENTLEVGDRMLVNRTAYPDGAADSQDVVVFTANEDWAHPMPPEGAVENAVRTFGDLT
28
+ GIGRSHEQALVKRVVGTAGQTVECCTAEGAVTVDGEPLDEPYIHNDLPFIRDELDCESEV
29
+ MSARCFGPVTVPEDSMLVLGDHRSNSADSVIACRGIPADQVGDCARFVTREDIVGEVFVT
30
+ VWPPTHWGGH
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000521.fa ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00506
2
+ MTDAPLFWRSEDLPRWHAWQRAQWPLTRRAADTARSTVRGVAGALTRRRSTGDDAPRLLL
3
+ PAGDVHTLVALESFGPTQLAALASPVAALATARPEAAAGVGWVLPAGDAPALPGAVGHRE
4
+ HAATADVVTDRLPGLRRVLVAGEYLPSGRAAVRWARQRGARVGVVQHGLLAVSTPPVPRD
5
+ ATLYAFTSADADWWTQGRADVEAVAVGSALLEQARRAAPAPSDTAGDGPGVFLGQLHGAE
6
+ LPRRDFAAAAEQYVRATGAAYRPHPAERDRLSRGQHAAWRRAGVRIDDAGAPLVATRGPV
7
+ AAVFSTGILEAAQAGRPAWAVHPDPPAWLEGFWRRYGMTRWRPGRTPEPTPPLASPTADP
8
+ AAAIAEHVWKESA
9
+ >PROKKA_00226
10
+ MTDAPLFWRSGDLPRWHAWQRAQWPLTRRAADTARSTVRGVAGALARRGSTGDDVPRLLL
11
+ PPGDVHTLVALESFGPTQLAALASPVAALATARPEAAAGVGWVLPAGDAPALPGAAGHRE
12
+ HAATADVVTDRLSGLRRVLVAGEYLPSGRAAVRWARQRGARVGVVQHGLLAVSTPPVPQD
13
+ ATLYAFTSADADWWTQGRADVEAVPVGSALLEQARRTAPALSGAGDDGPGVFLGQLHGAE
14
+ LPRRDFAAAAEQYVRATGAAYRPHPAERDRLSRGQHAAWRRAGVRIDDAGAPLVATRGPV
15
+ AAVFSTGILEAAQAGRPAWAVHPDPPAWLEGFWRRYGMTRWRPGRVPEPTPPLASPTTDP
16
+ AAAIAEHVWKESA
17
+ >PROKKA_02444
18
+ MSGVGSGDVPLFWRPEDLPAWQRWQRAQWPASRRLADTARRLARAGRGALAAGRGAAPAP
19
+ ESGLRLVLPAGDVHTLVGVESAAPTQRAALVEPVRALAEGRAGHAAADAARTAAGVGWVV
20
+ PADVVAAQLPDLPGSDALSVHAVDDVMVAERLGGLRCVLVAGEYLPAGRAAVRWARERGA
21
+ RVGVVQHGLLAVSTPPVPRDVALYAFTDHDAHWWTQGRTDVQAVAVGSALLEAARRMASH
22
+ AVADAVPRAAGPGVFLGQLHGAELPRTDFARAAQEYVRATGAAYRPHPAERDRLSLAQHE
23
+ AWRKAGMRIDATAGPLASTAGPVAAVFSTGILEAAQAGRPAWAVHPDPPAWLEGFWERYG
24
+ MTRWRPGVETEPTPPLASPSADPAAAIAAHLWKETA
25
+ >PROKKA_02328
26
+ MTRAVAQPPLFWRAEQLDAWRRWQRTQWPLARRAADLVRGGVARSRGAVQAPDAGLRLLL
27
+ PAGDVHTLIAVESAGPTQRAALVEPTRALAEGRTGLDAAARTRLLGGVAWVVPADVAGAL
28
+ LPDLPAAAQLTGHAADPDTVGTRLAGLERVLVAGEYLPAGRAAVRWAHERGASVHVVQHG
29
+ LLAVSTPPVPRDATLYAFTARDADWWTQGRADVRAVPVGSALLEAARRGAASADPTATGS
30
+ TGPGPGLFLGQLHGAELPRAQFAAAAEQYVRTTGAVYRPHPAERDRLSRAQHARWEGAGI
31
+ AVDRSGAPLTQTAGPVAAVFSTGILEAAQTGRPAWAVHPDPPRWLVEFWDRYGITRWMPG
32
+ ADPTPTPALVAPTADPAAAIARDLWKEHA
33
+ >PROKKA_00505
34
+ MTDAPLFWRSEDLPRWHAWQRAQWPLTRRAADTARSTVRGVAGALTRRRSTGDDAPRLYL
35
+ PAGDVHTLVALESFGPTQLAALASPVAALATARPEAAAGVGWVLPAGDAPALPGAVGHRE
36
+ HAATADVVTDRLSGLRRVLVAGEYLPSGRAAVRWARQRGARIGVVQHGLLAVSTPPVPQD
37
+ ATLYAFTSADADWWTQGRADVEAVPVGSVLLEQARRTAPALSGAGDDGPGVFLGQLHGAE
38
+ LPRRDFAAAAEQYVRATGAAYRPHPAERDRLSRGQHAAWRRAGVRIDDAGAPLVATRGPV
39
+ AAVFSTGILEAAQAGRPAWAVHPEPPAWLEGFWRRYGMTRWRPGRTPEPTPPLASPTADP
40
+ AAAIAEHVWKESA
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000570.fa ADDED
@@ -0,0 +1,50 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00580
2
+ MPTAPAPSEAAATPLHVAVRTLDAAALAAAGHTAATAVAAVYAHAVVRGAASFWLDSALP
3
+ DPAEARWSVAGDGLDVLGEEQGRVPSPGPRLVRHDDPADPDRAWAGLAAAAAPRPVVGGE
4
+ GLPLRGGLVGWLGYELGLADLGVTPPSRRAEDPAPLPAQFWVRPSRYVVADHAAGVLHCC
5
+ VVSLDPTTAEAGADRWAADVRRALAAARRALETAAGDAVVPPPQDAVPGPRADEEAPGTW
6
+ REDRAAYAEQIARCRAALHAGDSYELCLTTRFDADPGLRVDPLVLFHELAAHQPAPYAAL
7
+ LEHGTGSRRWAVVSASPERFLSGREGRYSTKPIKGTAARLADPAGDAEAARALAADPKTR
8
+ AENLMIVDLLRNDLSRVCEPGSVQVPSLMAVESYASVHQLVSTVTGTARAGIEPVDVVRS
9
+ LFPGGSMTGAPKRRSVELLAAWEASPRGVYSGALGMLSADGTTSLSVVIRTAVLAGGRWS
10
+ VGAGGAIVADSDPAAEHDEVLLKARGLRRALARAAGTGLPTTAPDIA
11
+ >PROKKA_00313
12
+ MPTAPAPSVAAATPLHVAVRTLDAAALAAAGHTAATAVAAVYAHAVVRGAASFWLDSALP
13
+ DPAEARWSVAGDGLDVLGEEQGRTPSPGPRLVRHDDPADPDRAWADLAAAAAPRPVVGGE
14
+ GLPLRGGLVGWLGYELGLADLGVTPPSPRPGDPASLPAQFWVRPSRYVVADHAAGVLHCC
15
+ VVSLAPTAAETGADRWAADVRRALAAARRALETASGDVVVPPPRDAGPGPQADEEAPGTW
16
+ REDRAAYAEQIARCRAALHAGDSYELCLTTRFDADPGLRVDPLVLFHELAAHQPAPYAAL
17
+ LEHGTGARRWAVVSASPERFLAGRAGRYSTKPIKGTAARLADPVADAEAARALAADPKTR
18
+ AENLMIVDLLRNDLSRVCEPGSVEVPSLMAVESYASVHQLVSTVTGTARAGVEPVDVVRS
19
+ LFPGGSMTGAPKRRSVELLAAWEASPRGVYSGALGMLSADGTTSLSVVIRTAVLAGGRWS
20
+ VGAGGAIVADSDPAAEHDEVLLKARGLRRALARAAGTGVPTTAPDVA
21
+ >PROKKA_02353
22
+ MAAVYAHAVQRGAGSFWLDSALPDPAEARWSVAGDGLDVLGEEQGRVPSPGPRLVRHADP
23
+ ADPERAWSDLAAAAAPRRVVGGEGLPLRGGLVGWLGYELGLADLGVRPPSRRAGDPAALP
24
+ AQFWVRPSRYAVADHAAGTLSCCVVALDAAAAEAAADRWAADVRRALDAARRATQAAADD
25
+ AAASEVRADVAPEAGTGEAAGAWREDRAAYDEHIARCHAALHAGDSYELCLTTRFDADPA
26
+ LRVDPLALFLELAAHQPAPYAALMEHGTGPRGWAVVSASPERFLAGRDGRYSTKPIKGTA
27
+ ARLPDPAADAEAARALAADPKTRAENLMIVDLLRNDLSRVCEPGSVQVPSLMAVESYATV
28
+ HQLVSTVTGTARAGVAPVDVVRSLFPGGSMTGAPKRRSVELLAQWEDSPRGVYSGALGLL
29
+ GADGAVSLSIVIRTAVLAAGRWGIGAGGAIVADSTAEAEHEEVLLKARGLRRALARADGT
30
+ ARTTTAPPRSR
31
+ >PROKKA_02247
32
+ MPTAPGRPDASPAPLHVAVRTLDIATLAAVGHTAATAAGAVYAHAVQRGTASFWLDSALP
33
+ DGGEARWSMVGDGVDVLGEEEGRIPSPGLRLIRHGDPADPDRAWADLAAAAAPREVHGGE
34
+ GLPLRGGLVGWLGYELGLADLGVTPPPPRPGDPAALPAQFWVRPSRYAVADHVAGALSCC
35
+ VVSLDADAAEAAADRWEADVRRALEAARTSTEEVEVDVDAPEAPGVWREDGAAYAEQIAR
36
+ CRAALHAGDSYELCLTTRFDADPALRVDPLALFRDLAAHQPAPYAALMEHGTGAERWAVV
37
+ SASPERFLSGRDGRYSTKPIKGTAARLPDPTEDAAAAAALAADPKTRAENLMIVDLLRND
38
+ LSRVCEPGTVQVPALMAVESYATVHQLVSTVTGVARAGVAPVDVVRSLFPGGSMTGAPKR
39
+ RTVELLAAWEGSPRGVYSGALGMLGADGTVELSIVIRTAVLSPTTPDAPARWSVGAGGAI
40
+ VADSDAHAEHEEVLLKARGLRRALTRAAGTA
41
+ >PROKKA_00581
42
+ MPTAPAPSEAAATPLHVAVRTLDAAALAAAGHTAATAVAAVYAHAVVRGAASFWLDSALP
43
+ DPAEARWSVAGDGLDVLGEEQGRVPSPGPRLVRHDDPADPDRAWADLGAAAAPRSVVGGE
44
+ GLPLRGGLVGWLGYELGMADLGVSPPSRRPEDPAPLPAQFWVRPSRYAVADHAAGVLHCC
45
+ VVSLDPTAAEAGADRWAADVRRALAAARRDLETAAGDAVVPPPEDAGPEPRADEEAPGTW
46
+ REDRAAYAEQIARCRAALHAGDSYELCLTTRFDADPGLRVNPLVLFHELAAHQPAPYAAL
47
+ LEHGTGARRWAVVSASPERFLAGREGRYSTKPIKGTAARLPDPAADAAAARALADDPKTR
48
+ AENLMIVDLLRNDLSRVCEPGSVEVPSLMAVESYASVHQLVSTVTGTARAGVEPVEVVRS
49
+ LFPGGSMTGAPKRRSVELLAAWEASPRGVYSGALGMLSADGTTSLSVVIRTAVLAGGRWS
50
+ VGAGGAIVADSDPAAEHDEVLLKARGLRRALARAAGTGVPTTAPDIA
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000601.fa ADDED
@@ -0,0 +1,34 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00673
2
+ MTRLPPVPRWSPSTDREVRAATGDRVRLLTDADTAALAALSARAPVSNVFVDSLLEAGRL
3
+ AGPRGGAAGTLFLGIDDDAPGAGALRAAVWIGSNVVPVAASEAPDAGWAPGDAEALGAAA
4
+ AALRRRYGSIYGPAGPVLAAGEALAAAGHRSRSVRPDQPLLVLGTAGGIDPNPHVVQAQP
5
+ HDFARVLPASAAMFEEELGFSPFAGGAAQYRDRVERLIHTGRVFIDPGPRDAGGPLRFKA
6
+ DIGLLSSRCAQIQGVWMAPAARGRGLAASAMAAVVDYVRLQAPVVSLYVNAYNTPALRTY
7
+ ERVGFERRGTFATVLY
8
+ >PROKKA_00410
9
+ MTRLPPVPRWSPSTDREVRAATGDRVRLLTDADTAALAALSARAPVSNVFVDSLLEAGRL
10
+ AGPRGGAAGTLFLGIDDDAPGAGALRAAVWIGSNVVPVAASEAPDAGWAPGDAEALGAAA
11
+ AALRRRYGSIYGPAGPVLAAGEALAAAGHRSRSVRPDQPLLVLGTAGGIDPNPHVVQAQP
12
+ HDFARVLPASAAMFEEELGFSPFAGGAAQYRDRVERLIHAGRVFIDPGPRDAGGPLRFKA
13
+ DIGLLSSRCAQIQGVWMAPAARGRGLAASAMAAVVDYVRLQAPVVSLYVNAYNTPALRTY
14
+ ERVGFERRGTFATVLY
15
+ >PROKKA_02289
16
+ MTRLPPVPRWSPSTDRQVRAATGGRVRLLTDADTPALAALSARAPVSNVFVDSLLEAGRL
17
+ AGPRGGAAGTLFLGIDAGEGRDDDGAPVAGLRAALWVGSNVVPVAAAETPDAGWAPGDAE
18
+ ALGAAAVALRRRYGSLYGPAEPVLAVGSALAAAGHRARSVREDQPLLVLGADGAAETSPH
19
+ VVQAHPRDFERVLPASAAMFEEELGFSPFLGGAAQYRDRVERLIRAGRVFIDPGPADAGG
20
+ PLRFKADIGLLSSRCAQIQGVWMAPAARGRGLAAAAMAAVVEYVRLQAPVVSLYVNAYNT
21
+ PALRTYERVGFERRGTFATVLY
22
+ >PROKKA_02151
23
+ MDLAAASDGRVRVLTDADTPALTALAAADPVANVHAASLLEAGRLAGPRGGRADGTLFLG
24
+ VEDPDRPGALRSACWVGSTVVPLAGHDDDVPALAASVAALRRRFASVYGPAVTVLAVGRT
25
+ LRDAGHRPRAVREEQPLMVHARTPGDLVPDPAVRAAAPGEWESVVPASAAMFEEELGFSP
26
+ FLTGAAQYRDRVRRLVADGRVFTAPGEPVVDDPTSGVRFKADIGLLSASCVQVQGVWLHP
27
+ SRRGRGEAAPAMAAAVALMARRAPAVSLYVNGFNTPALRTYERVGFERVGTFATVLY
28
+ >PROKKA_00643
29
+ MTRLPPVPRWSPSTDREVRAATGDRVRLLTDADTAALAALSARAPVSNVFVDSLLEAGRL
30
+ AGPRGGAAGTLFLGIDDDAPGAGGLRAAVWIGSNVVPVAASEAPDAGWAPGDAEALGAAA
31
+ AALRRRYGSIYGPAGPVLAAGEALAAAGHRSRSVRPDQPLLVLGTAGGIDPNPSVVQAQP
32
+ RDFARVLPASAAMFEEELGFSPFAGGAAQYRDRVERLIQAGRVFIDPGPRDAGGPLRFKA
33
+ DIGLLSSRCAQIQGVWMAPAARGRGLAVSAMAAVVDYVRLQAPVVSLYVNAYNTPALRTY
34
+ ERVGFERRGTFATVLY
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000639.fa ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00720
2
+ MARPTTVPGVRPRVAVLDYGSGNVHSALRAVERAGAEVELTRDPQAVQEADGLLVPGVGA
3
+ YASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERTAGMGEWPGVVAE
4
+ LPAEVLPHMGWNTVRPPEGSALFAGIEDERFYFVHSYGVLEWEFDQTISAMRPPQVTWAH
5
+ HGADFIAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
6
+ >PROKKA_00451
7
+ MARPTTVPGVRPRVAVLDYGSGNVHSALRAVERAGAEVELTRDPQAVQEADGLLVPGVGA
8
+ YASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERTAGMGEWPGVVAE
9
+ LPAEVLPHMGWNTVRPPEGSALFAGIEDERFYFVHSYGVLEWEFDQTISAMRPPQVTWAH
10
+ HGADFIAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
11
+ >PROKKA_02238
12
+ MARPTSVPGVRPSVAVLDYGSGNVHSAVRALERAGADVELTRDPEAVQSADGLLVPGVGA
13
+ FASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERAEGMGEWPGVVEA
14
+ LPAEVLPHMGWNTVRPPEGSALFAGIEDERFYFVHSYGVLRWEFDQTISAMRPPQVTWAH
15
+ HGADFVAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
16
+ >PROKKA_02110
17
+ MASPTSVPGVRPTVAVLDYGSGNVHSAVRAVEHAGARVELTKDPDAVLGADGLVVPGVGA
18
+ FASVMEALRSSGGTRWIGRRVAGGRPVLGICVGHQVLFEAGVEHGVRTEGMGEWPGVVEP
19
+ LPAATVPHMGWNTVRPAEGSALFAGIEDERFYFVHSYAVQSWEFDQGNEAMRPPQVTWSH
20
+ HGADFIAAVENGPLSATQFHPEKSGDAGQALLRNWLETL
21
+ >PROKKA_00684
22
+ MARPTTVPGVRPRVAVLDYGSGNVHSALRAVERAGAEVELTRDPQAVQEADGLLVPGVGA
23
+ YASVMRALTEVGGTRWIGRRVAGGRPVLGICVGHQILFDAGVEHGERTAGMGEWPGVVAE
24
+ LPAEVLPHMGWNTVRPAEGSALFAGIEDERFYFVHSYGVLEWEFDQTISAMRPPQVTWAH
25
+ HGADFIAAVENGPLSATQFHPEKSGDAGLQLLRNWLETL
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000676.fa ADDED
@@ -0,0 +1,36 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00764
2
+ MHSETPDPSPVPDRDGAAPDRPDPLIVVDEGQARVVPAPTAAPSSSHDAGGDPDADTDGV
3
+ DPEAAEPPTLVTVDVLAGWLGLAPVEDLPPVPEGPAYAQPGRCRPNRVILLDVRFRATAG
4
+ GPDHAAYLQGHLPGAVYVSLPSQLAGHAGPAAGRHPLPDARQFAETVRMWGIDEGDTIVV
5
+ YDDDHGLSAARAWWLLRHAGLRDSMLLDGGLEAWRAAGLPLQPGEVIPVPGTARPSWGRM
6
+ PVVDTAGAEAMASGGLLLDARAAERYRGEVEPFDPVAGHIPGARNVPTAESIAEDGRLRP
7
+ AAELAERFDAVGVDDATPVAVYCGSGITAAHAVLTLAVAGRPGVALYPGSWSAWVQDPSN
8
+ AVAVGPEPDGASGRD
9
+ >PROKKA_00494
10
+ MHSETPDPSPVPDRDGAAPDRPDPLIVVDEGQGRVVPAPTAAPSSSHDAGGDPDADIDGV
11
+ DPEAAEPPTLVTVDVLAGWLGLAPVEDLPPVPGGPAYAQPGRCRPNRVILLDVRFRATGG
12
+ GPDHAAYLQGHLPGAVYVSLPSQLAGHAGPAAGRHPLPDARQFAETVRMWGIDEGDTIVV
13
+ YDDDHGLSAARAWWLLRHAGLRDSVLLDGGLEAWRAAGLPLQPGEVIPVPGTARPSWGRM
14
+ PVVDTAGAEAMASGGLLLDARAAERYRGEVEPFDPVAGHIPGARNVPTAESIAEDGRLRP
15
+ AAELAERFDAVGVDDATPVAVYCGSGITAAHAVLTLAVAGRPGVALYPGSWSAWVQDPSN
16
+ AVAVGPEPDGASGRD
17
+ >PROKKA_02165
18
+ MWGIDDGDTVVVYDDDRGLSAARAWWLLRHAGLRDSMLLDGGLAAWRAGGLPLQPGEVIP
19
+ MPGSARTSWGRMPVVDTAGAEAMASGGLLLDARAAERYRGETEPIDPVTGHIPGARSLPT
20
+ AGSLAEDGRLRPAEELAARFDAVGVDDETPVAVYCGSGVTAAHAVLTLAVAGRPGVALYP
21
+ GSWSAWIQDPSNAVAVGPDPHGEPGRD
22
+ >PROKKA_02061
23
+ MKDSTEGRPPSPASSPAADAPTDQTPLAELAEDATAPDPAAAEPPSLVDVGVLAGWLGLT
24
+ PAEPVPAPPPGPVFDRRVDPGRVILLDVRYAVAGAGGSGHDAYLRGHLPGAVFVSLPNQL
25
+ AGHAGPRQGRHPLPDPVQFAHSLRMWGIDDGDTVVVYDDDRSLAAARAWWLLRHAGLRDS
26
+ VLLDGGLGAWRAAGLPLQPGEVIPQPGSVHPSWGRMPVVDTDGAEAIAAGGLLLDARSAE
27
+ RYRGEEEPLDPVAGHIPGARSLPTSGNVAADGRLLDPAALAARFEDAGLSDEVPAAVYCG
28
+ SGVTAAHQVLALAVAGRHGVALYPGSWSAWIQDPDRPVATGPRPEGD
29
+ >PROKKA_00728
30
+ MHSETPDPSPVPDRDGAAPDRPDPLIVVDEGQGRVVPAPTAAPSSSHDAGGDPDADIDGV
31
+ DPEAAEPPTLVTVDVLAGWLGLAPVEDLPPVPGGPAYAQPGRCRPNRVILLDVRFRATGG
32
+ GPDHAAYLQGHLPGAVYVSLPSQLAGHAGPAAGRHPLPDARQFAETVRMWGIDEGDTIVV
33
+ YDDDHGLSAARAWWLLRHAGLRDSVLLDGGLEAWRAAGLPLQPGEVIPVPGTARPSWGRM
34
+ PVVDTAGAEAMASGGLLLDARAAERYRGEVEPFDPVAGHIPGARNAPTAESIAEDGRLRP
35
+ AAELAERFDAVGVDDATPVAVYCGSGITAAHAVLTLAVAGRPGVALYPGSWSAWVQDPSN
36
+ AVAVGPEPYGASGRE
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000691.fa ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00782
2
+ MPQHTDAPTALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAVRDTGATRDW
3
+ QADPALYTTDAEALVDGADVVIELMGGIEPARTLILRALAAGTSVVTGNKALLAQHGEEL
4
+ YAAAAATGAQLSFEAAVAGAIPILRPLRDSLGGDRVTRVMGIANGTTNFILDRMDSEGAD
5
+ FDDALAEAQRLGYAEADPTADVEGHDAAAKAAILATIAFGAPYTLDQVAVAGITAITAED
6
+ NAAAAEAGYVIKLLAIAERGRAADGAQGAVLRVHPTLLPREHPLASVRGAFNAVFVEAEN
7
+ AGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVTALPALDPAEAHTSFMV
8
+ VLRAADQPGVLRRVAGVFEEHGVSIETLRQVPSEREDAPGASLRLITHRARQRDLDATVE
9
+ ALAALDVVHEVASVLRVEGN
10
+ >PROKKA_00513
11
+ MPQHTDAPTALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAVRDTGATRDW
12
+ QADPALYTTDAEALVDGADVVIELMGGIEPARTLILRALAAGTSVVTGNKALLAQHGEEL
13
+ YAAAAATGAQLSFEAAVAGAIPILRPLRDSLGGDRVTRVMGIANGTTNFILDRMDSEGAD
14
+ FDDALAEAQRLGYAEADPTADVEGHDAAAKAAILATIAFGAPYTLDQVAVAGITAITAED
15
+ NAAAAEAGYVIKLLAIAERGRAADGAQGAVLRVHPTLLPREHPLASVRGAFNAVFVEAEN
16
+ AGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVTALPALDPAEAHTSFMV
17
+ VLRAADQPGVLRRVAGVFEEHGVSIETLRQVPSEREDAPGASLRLITHRARQRDLDATVE
18
+ ALAALDVVHEVASVLRVEGN
19
+ >PROKKA_02148
20
+ MPQHTDAPTALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAVRNTGATRDW
21
+ QADPALYTTDAEALVDGADVVIELMGGIEPARTLILRALAAGTSVVTGNKALLAQHGEEL
22
+ YAAAAATGAQLSFEAAVAGAIPILRPLRDSLAGDRVTRVMGIANGTTNYILDKMDSEGAG
23
+ FDEALAEAQRLGYAEADPTADVEGHDAAAKAAILATLAFGAPYTLDQVAVSGITAITAED
24
+ NEAAADAGYVIKLLAIAERARAADSAEGAVLRVHPTLLPREHPLASVRGAFNAVFVEAEN
25
+ AGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVAELPALDPAEAVTSCLV
26
+ VLRVADEPGVLRRVAGVFEEQGVSIETLRQVQSDRDDAPGASLRLITHRARQRDLDATVE
27
+ ALAALDAVHEVASVLRVEGN
28
+ >PROKKA_02042
29
+ MAEPTASAAQTAPAPARDALRVALLGGGTVGSQAARILTEDAAVLADRVGVRLELTGIAV
30
+ RDTAAVRDWQADPSLYTTDAEALVDGADLVIELMGGIEPARSLIRRALQVGTSVVTGNKA
31
+ LLAEHGEELYRLASETGAQLSFEAAVAGAIPILRPLRDSLSGDTVNRVMGIANGTTNFIL
32
+ DRMDTEGASFADALAEAQRLGYAEADPTADVGGFDAAAKAAILATLAFGSSYTLDQVSVE
33
+ GITEVTAEDNAAAADAGYVIKLLAIAERDTARDGTAGAILRVHPTLIPREHPLGSVRGAY
34
+ NAVFVEAENAGQLMFYGPGAGGAPTASAVMGDAVAIGQRIVRGGPARLRTPVAALPALDV
35
+ SEARTSCMVVLRVADQPGVLRRVAGVFEEHGVSIETLRQVQGADDAAGASLRLITHRARQ
36
+ RDLDDVVAELTTLDAVHEVASVLRVEGN
37
+ >PROKKA_00749
38
+ MPQHTDAPTALKVALLGGGTVGSQTARILTEDADILRDRVGADLELTGIAVRDTGATRDW
39
+ QADPALYTTDAEALVDGADVVIELMGGVEPARTLILRALAAGTSVVTGNKALLAQHGEEL
40
+ YAAAAATGAQLSFEAAVAGAIPILRPLRDSLGGDRVTRVMGIANGTTNFILDRMDSEGAD
41
+ FDDALAEAQRLGYAEADPTADVEGHDAAAKAAILATIAFGAPYTLDQVAVAGITAITAED
42
+ NAAAAEAGYVIKLLAIAERGRAADGAQGAVLRVHPTLLPREHPLASVRGAFNAVFVEAEN
43
+ AGELMFYGPGAGGAPTASAVMGDVVSIAQRIVRGGPARLRTPVTALPALDPAEAHTSFMV
44
+ VLRAADQPGVLRRVAGVFEEHGVSIETLRQVPSEREDAPGASLRLITHRARQRDLDATVE
45
+ ALAALDVVHEVASVLRVEGN
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000719.fa ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00812
2
+ MAERFRWTRRGYTAQLELPEVRLLRGLVRDVVALLEGRRADVRPAEADPAEAPAAEDGVD
3
+ TPEDPPAAPPSVSAAQDAGPVAGLDASDAAFWGLVSGLHLSQDPEPQRSAPTDPAVARLL
4
+ PDAMPQAGAAEQGAHRALTEDALSEGKLADARLALELLRSTRVEVPHDQAPAFGRALNDV
5
+ RLVLAARLGVETEEDAARVHAVDDWRSAEDVESTMALLYNFTSWLLETLMTEMLSELPEG
6
+ ADESAPGAGDAEDEQ
7
+ >PROKKA_00544
8
+ MAERFRWTRRGYTAQLELPEVRLLRGLVRDVVALLEGRRADVRPAEADPAEAPAAEDGVD
9
+ TPEDPPAAPPSVSAAQDAGPVAGLDASDAAFWGLVSGLHLSQDPEPQRSAPTDPAVARLL
10
+ PDAMPQAGAAEQGAHRALTEDALSEGKLADARLALELLRSTRVEVPHNQAPAFGRALNDV
11
+ RLVLAARLGVETEEDAARVHAVDDWRSAEDVESTMALLYNFTSWLLETLMTEMLSELPEG
12
+ SDESAPGAGDAEGEQ
13
+ >PROKKA_02118
14
+ MAERFRWTRRGYTAQLEKPEVRLLRGLVKDVITLLEGRRRNVLSEADDLPADAPGAPEPS
15
+ ADVAPVPQGPEAGAGPAAGLDEADAAFWELVSGLHLSQDRVPHRAAPADPAVARLLPEAM
16
+ PQADAQERGAHRALTEDALSEGKLADARLALELLRSTRVEVPHHQAPAFGRALNDVRLVL
17
+ AARLGVETEEDAERVHAVDDWRSAEDVESTMALLYNFTTWLLETLMTEMLSELPEGADED
18
+ APGADEAGDDA
19
+ >PROKKA_02009
20
+ MAQRFRWTRRGYVAELEDAELRLLRGLVKDVVTLLENRQDEVAPPGSDAGTAEDAPEAGA
21
+ EPVADARPGDAVGPGEETPHDAAFWALVGGLDLVADPVAERSAPEDPAVARLLPDAMPHA
22
+ EPAERARQRALTEDALTAAKLADARRALEALRSVRVTVPHEHAVSFGRALNDVRLVLAAR
23
+ LGIETEQDAARVHAVDDWRDAQDVEATMALLYNFTTWLQETLMAEMLSELPLEGAAGPDE
24
+ EERA
25
+ >PROKKA_00781
26
+ MAERFRWTRRGYTAQLELPEVRLLRGLVRDVVALLEGRRADVRPAEADPAEAPAAEDGVD
27
+ TPEDPPAAPPSVSAAQDAGPVAGLDASDAAFWGLVSGLHLSQDPEPQRSAPTDPAVARLL
28
+ PDAMPQAGAAEQGAHRALTEDALSEGKLADARLALELLRSTRVEVPHDQAPAFGRALNDV
29
+ RLVLAARLGVETEEDAARVHAVDDWRSAEDVESTMALLYNFTSWLLETLMTEMLSELPEG
30
+ SDESAPGAGDAEGEQ
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000733.fa ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00828
2
+ MLTRLRGMDSAASTPSTPSAAPDIKPRSRDVTDGMERTAARGMLRAVGMGDEDFGKPQIG
3
+ IASSWNEITPCNLSLDRLAQASKDGVHAAGGYPLEFGTVSVSDGISMGHEGMHFSLVSRE
4
+ VIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFVYAGSIMPGVARLTDG
5
+ TERQVTIIDAFEAVGACARGLMSEEDLLRIEKSIAPGEGACGGMYTANTMASIGEALGMS
6
+ LPGSAAAPSADRRRDAFARRSGKAVVNMLRQGITARDIMTKPAFENAIAVTMAFGGSTNA
7
+ VLHLLAIAREAGVDLQLSDFNRIADRTPHIADLKPFGQYVMTDVDRIGGVPVVMKALLDE
8
+ GLLHGDTLTVTGKTLAENLAALDPDPVDGKVIRTMDDAMHPNGGIAILHGSLAPEGAVVK
9
+ SAGFDADVFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPKGGPGMREMLAITGAI
10
+ KGAGLGKDVLLITDGRFSGGTTGLCIGHIAPEAAEGGPIGLVQDGDRIRVDIAGRTMDLL
11
+ VDEAELAARRESWEPVEPKFTTGVLGKYAKLVHSAAEGAYLG
12
+ >PROKKA_00560
13
+ MLTRLRGMDSAASTPSTPSAAPDIKPRSRDVTDGMERTAARGMLRAVGMGDEDFGKPQIG
14
+ IASSWNEITPCNLSLDRLAQASKDGVHAAGGYPLEFGTVSVSDGISMGHEGMHFSLVSRE
15
+ VIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFVYAGSIMPGVARLTDG
16
+ TERQVTIIDAFEAVGACARGLMSEEDLLRIEKSIAPGEGACGGMYTANTMASIGEALGMS
17
+ LPGSAAAPSADRRRDAFARRSGKAVVNMLRQGITARDIMTKPAFENAIAVTMAFGGSTNA
18
+ VLHLLAIAREAGVDLQLSDFNRIADRTPHIADLKPFGQYVMTDVDRIGGVPVVMKALLDE
19
+ GLLHGDTLTVTGKTLAENLAALDPDPVDGKVIRTMDDAMHPNGGIAILHGSLAPEGAVVK
20
+ SAGFDADVFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPKGGPGMREMLAITGAI
21
+ KGAGLGKDVLLITDGRFSGGTTGLCIGHIAPEAAEGGPIGLVQDGDRIRVDIAGRTMDLL
22
+ VDEAELAARRESWEPVEPKFTTGVLGKYAKLVHSAAEGAYLG
23
+ >PROKKA_02094
24
+ MDTAASTPRTPSAAPDMKPRSRDVTDGMERAASRGMLRAVGLGDADFAKPQIGIASSWNE
25
+ ITPCNLSLDRLAQAAKEGVHADGGFPLEFGTVSVSDGISMGHEGMHFSLVSREVIADSVE
26
+ TVMMAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFVYAGSTMPGHARLSDGTEKQVTI
27
+ IDAFEAVGACARGLMSEEDLLRIEKAIVPTEGACGGMYTANTMASVGEALGMSLPGSATP
28
+ PSPDRRRDDFARRSGAAVVNLLRQGITARDIMTKEAFENAIAVTMAFGGSTNAVLHLLAI
29
+ AREAGVDLSLEDFNRVGDRTPHIADLKPFGRYVMTDVDRVGGVPVVMKALLDEGLLHGDA
30
+ LTVTGRTVAENLAELAPDPVDGDVIRTMDRPMHPNGGIAILHGSLAPEGAVVKSAGFDAD
31
+ VFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPRGGPGMREMLAITGAIKGAGLGK
32
+ DVLLLTDGRFSGGTTGLCIGHIAPEAADGGPIGLVRDGDRIRVDIAGRTLDVQVAEEELE
33
+ ARRREWTPVPPKFTTGVLGKYAKLVHSAAEGAYLG
34
+ >PROKKA_01993
35
+ MDTSAADRTPQDVVTAPDMKPRSRDVTDGMERTAARGMLRAVGLGDEDFAKPQIGIASSW
36
+ NEITPCNLSLDRLAQASKDGVHAAGGFPLEFGTVSVSDGISMGHEGMHFSLVSREVIADS
37
+ VETVMMAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFVYAGSIMPGVARLTDGTEKQV
38
+ TIIDAFEAVGACARGLMSEEDLLRIEKAIAPGEGACGGMYTANTMASIGEALGMSLPGSA
39
+ AAPSADRRRDAFARRSGEAVVNMLRLGITARDVMTKPAFENAIAVTMAFGGSTNAVLHLL
40
+ AIAREAGVDLQLSDFNRIADRTPHIADLKPFGQYVMTDVDRVGGVPVVMKALLDEGLLHG
41
+ DTLTVTGKTLAENLAALDPDPVDGTVIRTMENALHPNGGIAILHGSLAPEGAVVKSAGFD
42
+ ADVFEGTARVFDRERAAMDALEEGVIQAGDVVVIRYEGPKGGPGMREMLAITGAIKGAGL
43
+ GKDVLLITDGRFSGGTTGLCIGHIAPEAADGGPIGLVRDGDRIRVDIASRTLDLLVEEAE
44
+ LEARRTSWQPVPPKFTTGVLGKYAKLVHSAAEGAYLG
45
+ >PROKKA_00797
46
+ MLTRLRGMDSAASTPSTPSAAPDIKPRSRDVTDGMERTAARGMLRAVGMGDEDFGKPQIG
47
+ IASSWNEITPCNLSLDRLAQASKDGVHAAGGYPLEFGTVSVSDGISMGHEGMHFSLVSRE
48
+ VIADSVETVMMAERLDGSVLLAGCDKSLPGMLMAAARLDLASVFVYAGSIMPGVARLTDG
49
+ TERQVTIIDAFEAVGACARGLMSEEDLLRIEKSIAPGEGACGGMYTANTMASIGEALGMS
50
+ LPGSAAAPSADRRRDAFARRSGEAVVKMIRQGITARDIMTKPAFENAIAVTMAFGGSTNA
51
+ VLHLLAIAREAGVDLQLSDFNRIADRTPHIADLKPFGQYVMTDVDRIGGVPVVMKALLDE
52
+ GLLHGDTLTVTGKTLAENLAALDPDPVDGKVIRTMDDAMHPNGGIAILHGSLAPEGAVVK
53
+ SAGFDADVFEGTARVFDRERAAMDALEDGTIAAGDVVVIRYEGPKGGPGMREMLAITGAI
54
+ KGAGLGKDVLLITDGRFSGGTTGLCIGHIAPEAAEGGPIGLVQDGDRIRVDIAGRTMDLL
55
+ VDEAELAARRESWKPVEPKFTTGVLGKYAKLVHSAAEGAYLG
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000748.fa ADDED
@@ -0,0 +1,50 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00861
2
+ MTETTAPAAPAEQEAAPRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLARGEV
3
+ PFHEPGLPELLRTHVASGRLRFTTDVAEAARWADVHFIGVGTPQKVGETAADLSYVDAAV
4
+ ASLAAAIDRDALIVGKSTVPVGTARRLAELVRTVRAEAGLPGEVELAWNPEFLREGFAVR
5
+ DTLTPDRLVIGMHGPRAEGILRRVYARQLAADTPWISTDLETAELVKVAANAFLATKISF
6
+ INAFSEITENVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSELGL
7
+ DRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARDGRIRRAEASGPAPTPASVQVLNGTRI
8
+ AVLGVTFKPDSDDVRDSPALDVANRLYTAGADVRVYDPEGNANAAARFPRLDYVDSLEAA
9
+ VDGAELTLLLTEWRQFREMDPDTVGARVASRLLIDGRNVLDVAAWREHGWDVIGLGHRFD
10
+ PERLLRAA
11
+ >PROKKA_00583
12
+ MTETTAPAAPAEQEAAPRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLARGEV
13
+ PFHEPGLPELLRTHVASGRLRFTTDVAEAARWADVHFIGVGTPQKVGETAADLSYVDAAV
14
+ ASLAAAIDRDALIVGKSTVPVGTARRLAELVRTVRAEAGLPGEVELAWNPEFLREGFAVR
15
+ DTLTPDRLVIGTHGPRAEGILRRVYARQLAADTPWISTDLETAELVKVAANAFLATKISF
16
+ INAFSEITENVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSELGL
17
+ DRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARDGRIRRAEASGPAPTPASVQVLNGTRI
18
+ AVLGVTFKPDSDDVRDSPALDVANRLYTAGADVRVYDPEGNANAAARFPRLDYVDSLEAA
19
+ VDGAELTLLLTEWRQFREMDPDTVGARVASRLLIDGRNVLDVAAWREHGWDVIGLGHRFD
20
+ PERLLRAA
21
+ >PROKKA_02074
22
+ MTHPSAPAEQDRAPRLSVIGTGYLGATHAACMAELGFEVLGVDVDPEKIARLSRGEVPFH
23
+ EPGLPELLRTHVESGRLRFTTDVAEAARWADVHFVGVGTPQKVGESGADLRYVDAAVASL
24
+ AAAIDRDALIVGKSTVPVGTARRLAAMVRRVRAEAGLPGEVELAWNPEFLREGFAVKDTL
25
+ TPDRLVIGTDGPRAEQVLRRVYARQLAADTPWISTDLETAELVKVAANAFLATKISFINA
26
+ FSEITEAVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSELGLDRT
27
+ MRFLAEVDDINLRRRDRVVDLAVQVLSAARDAGRGEAAAYGGKTTASGVEVLRGARIAVL
28
+ GVTFKPDSDDVRDSPALDVANRLYTAGADVRVHDPEGNANAAARFPRLDYVDSLEEAVEG
29
+ AELTLLLTEWQAFREMDPAAVGALVDARLLIDGRNVLDLAAWAEHGWTVVGLGHRFDPAA
30
+ LGA
31
+ >PROKKA_01968
32
+ MTETAVVPAAAESEEAPARPRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLAR
33
+ GEVPFHEPGLPELLRAHVASGRLRFTTDVAEAASWADVHFIGVGTPQKVGEAAADLTYVD
34
+ AAVESLARAIDRDALIVGKSTVPVGTARRLAARVAEIRAAEGLPGEVELAWNPEFLREGY
35
+ AVKDTLTPDRLVIGTHGPRAELLLRTVYATPLAAGTPWISTDLETAELVKVAANAFLATK
36
+ ISFINAFSEITETVGGDIGTLADAIGHDGRIGRRFLNAGVGFGGGCLPKDIRALQARVSE
37
+ LGLDRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARQGVVRSAPGGARTAPTPAGVQVLN
38
+ GTRIAVLGVTFKPYSDDVRDSPALDVANRLFTAGAEVAVYDPEGNANAAARFPRLGYVDS
39
+ LDAALQGAELVLLLTEWDEFRQMDPAAAGELVAQRILIDGRNVLDVDAWGEHGWTVLGLG
40
+ HRFDPAALNGGRPGDDAQA
41
+ >PROKKA_00820
42
+ MTETTAPAAPAEQEAAPRLSVIGTGYLGATHAACMAELGFEVLGVDVDPAKIERLARGEV
43
+ PFHEPGLPELLRTHVASGRLRFTTDVAEAARWADVHFIGVGTPQKVGETAADLSYVDAAV
44
+ ASLAAAIDRDALIVGKSTVPVGTARRLAELVRTVRAEAGLPGEVELAWNPEFLREGFAVR
45
+ DTLTPDRLVIGTHGPRAEGILRRVYARQLAADTPWISTDLETAELVKVAANAFLATKISF
46
+ INAFSEITENVGGDIGTLADAIGHDARIGRRFLNAGVGFGGGCLPKDIRALQARVSELGL
47
+ DRTMRFLAEVDDINLRRRDRVVDLAVQVLSAARDGRVRRADASGTAPTPASVQVLNGTRI
48
+ AVLGVTFKPDSDDVRDSPALDVANRLYTAGADVRVYDPEGNANAAARFPRLDYVDSLEAA
49
+ VDGAELTLLLTEWRQFREMDPDAVGARVASRLLIDGRNVLDAAAWREHGWDVIGLGHRFD
50
+ PERLLRAA
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000758.fa ADDED
@@ -0,0 +1,35 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00871
2
+ MGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADACPAQDDAGAVLAHAGAAALDSA
3
+ RGNSGMLLAVSLAGMAEPLRGRERVDAFALAAAFGAADRAARQALSDPREGTILTVLSAA
4
+ ARSLARSSTQAPDTPAVAGDADPAVRLGPAVTLMLADCVQAVEETESLLAPLTRAHVVDA
5
+ GAVGLLWVFEALRAVVTGTPVDEELATALPGYGEGAHAAEAEPAAAAEAPAEGAVEVMGT
6
+ LALTPLAAAELRRRLTEVGDAVILAPLGTARDGQGRVPWRVHVHVPRAEDAIGPLRAAGD
7
+ VEGLTVTDLAGPSHGDDAAPDGCHGR
8
+ >PROKKA_00593
9
+ MSTPSRPSLVRHWLALAEELVGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADACP
10
+ AQDDAGAVLAHAGAAALDSARGNSGMLLAVSLAGMAEPLRGRERVDAFALAAAFGAADRA
11
+ ARQALSDPREGTILTVLSAAARSLARSSTQAPDTPAVAGDADPAVRLGPAVTVMLADCVQ
12
+ AVEETESLLAPLTGAQVVDAGAVGLLWVFEALRAVVTGTPVDEELATALPGYGEGVHAAE
13
+ GEPAAAAEAPAEGAVEVMGTLTLTPLAAAELRRRLADVGDAVILAPLGTARDGQGRVPWR
14
+ VHVHVPRAEDAIGPLRAAGDVEGLTVTDLAGPSHGDDAAPDGCHGR
15
+ >PROKKA_02064
16
+ MSTPPRPSLVRHWLALAEELVGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADACP
17
+ AQDDAGAVLARAGAAALDLARGNSGTLLAVALAGMAEPLRGRARADAFALAAAFGAADRA
18
+ ARQALSDPREGTILTVLSAASRSLARSATQAPDSPAVAADVDPAVRLGPAVTAMMADCLR
19
+ AVEQTESQLAPLAQARVVDAGAVGLLWVLEALRAAVTDTAPDEELATALHGYVEGVRPGP
20
+ EPAGEDAVEVMGTLALTPLAAADLRRRLAETGDSVILAPVGTERDEHGRVPWRVHVHVPR
21
+ AADAVELMRAAGEVQGLAVTELSGDAAGPDADGCHGR
22
+ >PROKKA_01958
23
+ MIRARLRGALAWLRGAEAALAQAAPRLDALNLFPVPDADTGSNMLATVRAARQAAERSAG
24
+ TDMSAVLRDAGAAALDSARGNSGTLLAVALVGLAAPLTPDAPLTTAELAAGARAADRAAR
25
+ AALSDPREGTILTVLREAATVLEAAAAGGREPAEALGSVVEAARRAVEDTEGQLAPLTRA
26
+ RVVDAGAVGLLLVLEALRAEVTRTPFDEGVVAALHGWADGPGAAGEDPQADGREAPGVEV
27
+ MCSIDLTPVDAAGLRRGLEEAGDSVILAPLSRAVDGAGRLRWRVHVHVARAEDAVALLEA
28
+ AGAPEEVAVTDLWDPAHRHPDDPAEGDAASPAPDGHGR
29
+ >PROKKA_00830
30
+ MSTPSRPSLVRHWLALAEELVGRAAPRLDALNLFPVPDADTGTNMLATLTAARTAADACP
31
+ AQDDVGAVLAHAGAAALDSARGNSGMLLAVSLAGMAEPLRGRERVDAFALAAAFGAADRA
32
+ ARQALSDPREGTILTVLSAAARSLARSSTQAPDTPAVAGDADPAVRLGPAVTVMLADCVQ
33
+ AVEETESLLAPLTRAHVVDAGAVGLLWVFEALRAVVTGTPVDEELATALPGYGEGVHAAE
34
+ GEPAAAAETPAEGAVEVMGTLALTPLAAAELRRRLADVGDAVILAPVGTARDGQGRVPWR
35
+ VHVHVPRAEDAIGPLRAAGDVEGLAVTDLAGPSHGDAAPDGCHGR
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000763.fa ADDED
@@ -0,0 +1,35 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00876
2
+ MTVPPPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVTEARRAGLADV
3
+ LMITGRNKRALEDHFDRHPALEAALEHKGDTKRLAQIHESDLVGDIHYVRQGEALGLGHA
4
+ VNCARRHVGEEPFAVLLGDDIIGDGEALLERMIDVQQRLGGSVIALMEVPEEAVSAYGVA
5
+ AVQAVPGEGDDVVRVTDLVEKPAREDAPSTLAIIGRYVLAPQVFDVLDETPPGRGGEIQL
6
+ TDALQRLATEDGEGRGVHAVVFDGRRYDTGDKLGYLQAVIEFGTRHEDLGADLRAWLREF
7
+ TAGL
8
+ >PROKKA_00598
9
+ MTVPPPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVTEARRAGLADV
10
+ LMITGRNKRALEDHFDRHPALEAALEHKGDAKRLAQIHESDLVGDIHYVRQGEALGLGHA
11
+ VNCARRHVGEEPFAVLLGDDIIGDGEALLERMIDVQQRLGGSVIALMEVPEEAVSAYGVA
12
+ AVEAVPGEGDDVVRVTDLVEKPAREDAPSTLAIIGRYVLAPQVFDVLDETPPGRGGEIQL
13
+ TDALQRLATEDGEGRGVHAVVFDGRRYDTGDKLGYLQAVIEFGARHEDLGADLRAWLREF
14
+ TAGL
15
+ >PROKKA_02059
16
+ MTVPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVAEARRAGLQDVLM
17
+ ITGRNKRALEDHFDRHPALEATLERKGDATRLAQIRESDLVGDIHYVRQGEALGLGHAVN
18
+ CARRHVGDEPFAVLLGDDIIGDGEALLARMIDVQQRLGGSVVALMEVPEEAVSAYGVAAV
19
+ EAVPGEGEDVVRVTGLVEKPAREDAPSTLAVIGRYVLASQVFDVLDRTPPGRGGEIQLTD
20
+ ALQTLADDDGEGGGVHAVVFDGRRYDTGDKLGYLQAVVEFGTRHEELGGDLRAWLKAFAA
21
+ GL
22
+ >PROKKA_01953
23
+ MTEQSTAASPTRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVAEAVSAG
24
+ LGDVLMITGRNKRALEDHFDRHPALEQVLEAKGDTKRIDLIRASDLVGDIHYVRQGEALG
25
+ LGHAVGCARRHVGDEPFAVLLGDDLIGEDEGLLARMIDVQHRLGGSVIALMEVPEDAVSA
26
+ YGVAAVAPVDGEDDDVVAVTSLVEKPARGDAPSNLAIIGRYVLAPQVFEVLERTAPGRGG
27
+ EIQLTDALQTLAAGEGEGFGVHAVVFRGRRYDTGDKLGYLQAVVELGVRHPELGGDLREW
28
+ LKGFAAGL
29
+ >PROKKA_00835
30
+ MTVPPPSRPRTRKAVIPAAGLGTRFLPATKAMPKEMLPVVDRPAIEYVVTEARRAGLADV
31
+ LMITGRNKRALEDHFDRHPALEAALEHKGDATRLAQIHESDLVGDIHYVRQGEALGLGHA
32
+ VNCARRHVGEEPFAVLLGDDIIGDGEALLERMIDVQQRLGGSVIALMEVPEEAVSAYGVA
33
+ AVQAVPGEGDDVVRVTDLVEKPAREDAPSTLAIIGRYVLAPQVFDVLDETPPGRGGEIQL
34
+ TDALQRLATEDGEGRGVHAVVFDGRRYDTGDKLGYLQAVIEFGTRHEDLGADLRAWLREF
35
+ TAGL
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000783.fa ADDED
@@ -0,0 +1,29 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00910
2
+ MRTSEPRDPRRSRGSVASGAGSSPGTTAAPASGASRWWAWLGLTVVAAVVVAAVLRALTG
3
+ PVYLIPSGSMEPTLQPGDRVRVDAAAAGGQGLHHGDVVVFDGAGSLAPYRSAGSLERGLE
4
+ DVARWWGVGAAEDVFVKRVLALPGDRLECCAPDGRLLREGEPLDEPYLGRPVTADEPAAA
5
+ GTWSFEVPDGRMVVLGDHRAASRDSRALLGAPGGGLIPLERVEGRAAEIVWPLSRRGTVD
6
+ APSGDTP
7
+ >PROKKA_00629
8
+ MRTSEPRDPRRSRGSVASGAGSSSGPTAAPASGTSRWWAWLGLTVVAAVVVAAVLRALTG
9
+ PVYLIPSGSMEPTLQPGDRVRVDAAAAGGQGLHHGDVVVFDGAGSLAPYRSAGSLERGLE
10
+ DVARWWGVGAAEDVFVKRVLALPGDRLECCAPDGRLLRNGEPLDEPYLGRPVTADEPAAA
11
+ GTWSFEVPDGRMVVLGDHRAASRDSRALLGAPGGGLIPLERVEGRAAEIVWPLSRRGTMD
12
+ APSGDTP
13
+ >PROKKA_02032
14
+ MSHPEPRDPRRSRGSAVSRSVAPGSGRGTTPARGSGGTAWWAWIGLTVAAAVGAAAVLRA
15
+ LTGPVYLIPSGSMEPTLHPGDRVRVDASAAGGEGVRRGDVVVFDGAGSLAPYRSVGSLER
16
+ GLEDVARSWGLGASGDAFVKRVLALPGDRLECCAPDGRLLRDGAPVDEPYLGRPVTAQDP
17
+ AADGSWTFEVPEGRMVVLGDNRSASRDSRALLGGAGGGLIPLKRVEGRAAEVVWPLDRRG
18
+ PVDASAPEAAPGAAP
19
+ >PROKKA_01930
20
+ MRAQEPRDRNRSRGSRASGEAGRPWWALVLLTLAGAVVAAALLRAFTGPVYLVPSGSMEP
21
+ TLLPGDRVHVDTAAADGAGLEHGDVVVFDGAGSLAPYRSRTALDRGLEDVAAFWGVGAAQ
22
+ DVYVKRVLALPGDTLSCCTADGRLERNGAPLDESYLGRTVDAAAPASRSTWAFEVPEGRM
23
+ VVLGDNRDVSRDSRALLGAPGGGLIPVEKVIGRVDSVAWPLDRRGDVPAGAQDGSRG
24
+ >PROKKA_00858
25
+ MRTSEPRDPRRSRGSVASGAGSSSGPTAAPASGTSRWWAWLGLTVVAAVVVAAVLRALTG
26
+ PVYLIPSGSMEPTLQPGDRVRVDAAAAGGQGLQRGDVVVFDGAGSLAPYRSAGSLERGLE
27
+ DVARWWGVGAAEDVFVKRVLALPGDRLECCAPDGRLLREGEPLDEPYLGRPVTADEPAAA
28
+ GTWSFEVPDGRMVVLGDHRAASRDSRALLGAPGGGLIPLERVEGRAAEIVWPLSRRGTVD
29
+ APSGDTP
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000848.fa ADDED
@@ -0,0 +1,96 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_00999
2
+ MAANNEDTTRADERVEETAEQAVTQTAADTADGAEPERTAASDDAADPAEEPSAPTLQVD
3
+ PTDPFAVPANLIEVLRTETTSRQRSEDEDAGESEDRAEGAVVSRRRRRRRRGEVDMELDG
4
+ GEAGDPEHTVTRVRAPRQAVGTASDTVQSVKGSTRLEAKRQRRRDSRSGGRRRTVITEAE
5
+ FLARREAVDRKMLVRQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSM
6
+ EAAFVDIGRGRNAVLYAGEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDPVGHKGARL
7
+ TSQVSLPGRYLVYVPGGSMTGISRKLPDVERSRLKKILKDHLPQDAGVIVRTAAEGTSEQ
8
+ ELQNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEAT
9
+ WDNIEAYVTYVAPHLLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVI
10
+ DRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVL
11
+ EANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGI
12
+ LIQDTPVERGRSGGEQRGEAEGRRRRRRRGDGEGEHAHAAAATTTGAEHADSEDERQRRE
13
+ RAEAARVALHSIAKASGKVAEDEAPAQESAPAEQAADAAEDSAAEAVEAASAGPAEAGQP
14
+ AGTDEEETPRRRRRRGRRRSRGRAEESGDTGAEDAGSEDAARSHDDGPAESAGQTRQTEE
15
+ EAAEPAAAAAPEHQDPVVQAEEAVAAVAEAEADAEAESPEDAAEQDDRPRRSRRRRGGRG
16
+ RSRRGGEAASTEADADAEDHGAERATPSRHEAADADSSVAVSSEVASEPVPAEDAPAPVP
17
+ AEDAPAPRRRRSRRASSDGVVRPAAGADASAERTADRTDAAPVEATEPSPEESTDATEVH
18
+ EQPAAPAAVEEAVMVEPAATEPTAEPTADADQASAADAPTEAQAAPTAPVPGSPRRRSRR
19
+ AVSSDGVHVQVQAAPGGAQGGRFTAAVAEASTPAEPQGAAPVMLGVGVKAADLARRGR
20
+ >PROKKA_00713
21
+ MAANNEDTTRADERVEETAEQAVTQTAADTADGAEPERTAASDDAADPAEEPSAPTLQVD
22
+ PTDPFAVPANLIEVLRTETTSRQRSEDEDAGESEDRAEGAVVSRRRRRRRRGEVDMELDG
23
+ GEAGDPEHTVTRVRAPRQAVGTASDTVQSVKGSTRLEAKRQRRRDSRSGGRRRTVITEAE
24
+ FLARREAVDRKMLVRQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSM
25
+ EAAFVDIGRGRNAVLYAGEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDPVGHKGARL
26
+ TSQVSLPGRYLVYVPGGSMTGISRKLPDVERSRLKKILKDHLPQDAGVIVRTAAEGTSEQ
27
+ ELQNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEAT
28
+ WDNIEAYVTYVAPHLLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVI
29
+ DRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVL
30
+ EANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGI
31
+ LIQDTPVERGRSGGEQRGEAEGRRRRRRRGDGEGEHAHAAAATTTGAEHADSEDERQRRE
32
+ RAEAARVALHSIAKASGKVAEDEAPAQESAPAEQAADAAEDSAAEAVEAASAGPAEAGQP
33
+ AGTDEEETPRRRRRRGRRRSRGRAEESGDTGAEDAGSEDAARSHDDGPAESAGQTRQTEE
34
+ EAAEPAAAAAPEHQDPVVQAEEAVAAVAEAEADAEAESPEDAAEQDDRPRRSRRRRGGRG
35
+ RSRRGGEAASTEADADAEDHGAERATPSRHEAADADSSVAVSSEVASEPVPAEDAPAPVP
36
+ AEDAPAPRRRRSRRASSDGVVRPAAGADASAERTADRTDAAPVEATEPSPEESTDATEVH
37
+ EQPAAPAAVEEAVMVEPAATEPTAEPTADADQASAADAPTEAQAAPTAPVPGSPRRRSRR
38
+ AVSSDGVHVQVQAAPGGAQGGRFTAAVAEASTPAEPQGAAPVMLGVGVKAADLARRGR
39
+ >PROKKA_01891
40
+ MAANEDTTGAEERAEQTEQTTAETSAAVAGQAAAESPVEDGGTVTQAQADAAEGADAPER
41
+ TAEAADIEDEAETDTAAEPEPDEAPGAPALQFDPTDPFAVPANVMEILRTEKSERRPARD
42
+ ERPARGAEDEEEAPGRSRRRRRPSRDRDQAETEAGAEDEAVETAEGEQDAETAERGEGAV
43
+ VSRRRRRRRRGDVDMELDGGEDGDPENTVTRVRAPRQALSTGSDAVQGVKGSTRLEAKRQ
44
+ RRRDSRSGGRRRTVITEAEFLARREAVDRKMLVRQREHRIQIAVLEDGVLAEHFVSNTTQ
45
+ DSLIGNVYVGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDAAQLDGKPKKIENALKSG
46
+ DTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERSRLKKILKDH
47
+ LPQDAGVIVRTAAEGTSEQELQNDINRLRAQWEGIQEKASSTKVLAPELLYAEPDLTIKT
48
+ VRDVFNEDFSAVLVQGEATWDNIEAYVTYVAPHLLDRLHHWVPQDHDGEDLYATHRVDEQ
49
+ LHKALERKVYLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQ
50
+ LRLRDIGGIIVIDFIDMVLEANQDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMG
51
+ TGLVEVFSETCEHCAGRGILIHDTPVERGRSGGEPRGEGEGRRRRRRKGAGEGEQAQPAE
52
+ STTTAGGEEVDAEDERQRRERAEAARAALHSIAKASGKVSEDEDPAEQAAPAEQAADAAE
53
+ DQAAEAVEAARQDAAEETGEAGAQDGEGAEDEDEAPRRRRRRGRRRGRGRSEEAAEAAEA
54
+ ASEDGSRDADAAPAGQAPAADEEEAPAADPVAQAEAAVTAVAEAEADAESGGEEREAEPA
55
+ GDEEGARPRRARRRRGGRGRSRRGADREASTADADDEAAQPAQEPAQADAGAAGDRARAS
56
+ RAGRVGAARAARVRPGRGRGGRRAASRPAPPPFAPRFERRCRAPGRGPGRRPGVVRPGDP
57
+ VPRGGGRRRGDRAHRGAVHGRHRGARAPGRPRPGGGGRDGRAGGGRPRPGRAGRARPAAR
58
+ PELRARRPPSPGAVGPVARCPRTACACRSRTPPGRHGADASRRPPPSPRPPPSRAPRRP
59
+ >PROKKA_01819
60
+ MAADESTTQDTHETAEGSTTPVEATEEETAAEVAESPAGEAAEATAAPDVRFDPTNPFAV
61
+ PEGLLPLIEAETVERRRRRPAADPVPEGAADDAHADDEDDEDRPAVSRRRRRRRRGTVDM
62
+ ELAGGEDGDPEDTVTRVRAPRRALSTGPEAVQGVKGSTRLEAKRQRRRESRSGGRRRTVI
63
+ TEAEFLARRESVDRKMLVRQREHRIQIAVLEDGVLAEHFVSNTTQDSMIGNVYLGKVQNV
64
+ LPSMEAAFVDIGRGRNAVLYAGEVDWDAAQLDGKAKKIENALKSGDTVLVQVTKDPVGHK
65
+ GARLTSQISLPGRYLVYVPGGTMTGISRKLPDVERARLKKILKDHLPQDAGVIVRTAAEG
66
+ TSEQELQNDINRLRVQWEGIQEKASSTKTLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQ
67
+ GEATWDSIEAYVTYVAPHLLDRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGG
68
+ SLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFI
69
+ DMVLESNQDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSEVCEHCG
70
+ GRGILIQDTPVERNRWGHEHRAEPEARRRNKRRRGTESGEGGPAEPTAAELTEEERLRAE
71
+ RAAAARTALMSIAKASGKAADEEPSEEAAPRAEDAPEEAADEVRPSPAGDAEEQGESESG
72
+ GRRRKRRGRRRGRGRGGDDAARSAEEQDAPAEHPAEAAGEPAPAEAGAPDPAETATEDAD
73
+ ADSASDAPAAQAEADEDGRSGGRRRSRRRGGRRAESPQGSGAPASAPEASVEAEQDPEEP
74
+ AGAAEAEEALAAEEAPASPEPAAVVTFDGEPVAVPRRRRSRRATSDGVSAPRPSGMDALE
75
+ AAVDRRAEDAAAAAQRSPATPAATPTAAPEPAPAPVAGEGPAAAAPRRRSRRAVSADGAT
76
+ VQVQEGAAAGGGRFTAQAAQAAPAGETAAPVMLGVGVKAADIVRGE
77
+ >PROKKA_00942
78
+ MAANNEDTTRADERVEETAEQAVTQTAADTAAGAVQPERTPASDDAADAPEEPSAPTLQV
79
+ DPTDPFAVPANLIEVLRTETTSRQRSEDEDDPDTSGRSRRRRRPSREDDRAEEGAADASA
80
+ DAEDREDASESEDRAEGAVVSRRRRRRRRGEVDMELDGGEAGDPEHTVTRVRAPRQAVST
81
+ ASDTVQSVKGSTRLEAKRQRRRDSRSGGRRRTVITEAEFLARREAVDRKMLVRQRDQRIQ
82
+ IAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNW
83
+ DAAQLDGKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGI
84
+ SRKLPDVERSRLKKILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWEGIQEKASG
85
+ TKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWDNIEAYVTYVAPHLLDRLHHW
86
+ VPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGN
87
+ LEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVECLGRDRTKH
88
+ QVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGIIIKDTPVERGRSGGEQRGEAEG
89
+ RRRRRRRGNGEGEHAHAAAATTTGAEHADSEDERQRRERAEAARVALHSIAKASGKVAED
90
+ ETPAQEPAPAEQAADAAEDSVAEAVEAASTGPAEAGQPAAADEEETPRRRRRRGRRRSRG
91
+ RAEESGDTGAEDAGSEDAARSHDDGPAESAGQTRQTEEEAAEPAAAAAPEHQDPVVQAEE
92
+ AVAAVAEAEADAEAESPEDAAEQGDRPRRSRRRRGGRGRSRRGGEAASTEADADAEDHGA
93
+ ERATPSRHEAADADSSVAVSSEVASEPVPAEDAPAPVPAEDAPAPRRRRSRRASSDGVVR
94
+ PAAGADASAERTADRTDAAPVEATEPSPEESTDATEVHEQPAAPAAVEEAVMVEPAATEP
95
+ TAEPTADADQASAADAPTEAQAAPTAPVPGSPRRRSRRAVSSDGVHVQVQAAPGGAQGGR
96
+ FTAAVAEASTPAEPQGAAPVMLGVGVKAADLARRGR
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000859.fa ADDED
@@ -0,0 +1,16 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_01017
2
+ MYPTPMTFDVARAGRALAQVSARTLATAAGLEKEQLRRFEKGLADLRVDERLRLEKALLK
3
+ YGVGLVPEDEFGGAGVRRIFSAEKSRRIKAMENEGGPAYEDDI
4
+ >PROKKA_00731
5
+ MYPTPITFDVARAGRALAQVSVRTLATAAGLEKEQLRRFEKGLADLRVDERLRLEKALLK
6
+ YGVGLVPEDEFGGTGVRRIFTAEKSRRIEAMENEGGPAYEDDI
7
+ >PROKKA_01870
8
+ MYPTPMTFDVARAGRALAQVSVRTLATAAGLEKEQLRRFEKGLADLRVDERLRLEKALRK
9
+ YGVGLVPEDEFGGTGVRRIFTAEKSRRLEAMENEGGPAYEDDI
10
+ >PROKKA_00705
11
+ MESQHISNGDMTRAARILVKVSAQYIAREANVTKEELRDFEKGRHDLSEKKQERVRAALE
12
+ ELGAEFLPDGPNGGYGIRLKFGRSRIYSLERCEGEGGPRLTTESDRRTQAHVPFSEPDSN
13
+ LPFHLEDRTTASLRILVPLRLGRLWPSHLASVPGMEARAR
14
+ >PROKKA_00961
15
+ MYPTPMTFDVARAGRALAQVSVRTLATAAGLEKEQLRRFEKGLADLRVDERLRLEKALRK
16
+ YGVGLVPEDEFGGAGVRRIFTAEKSRRLEVLENEGGPAYEDDI
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000865.fa ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_01023
2
+ MSTSPTVTRNDAESRYELHDGGTLLAVLDFRDNGAAVSLNRAFTIPVHRGRGHAAALTAG
3
+ AVEDIATNGGPAGGRRIVPMCWYVAQWFDEHPEKSALLAPR
4
+ >PROKKA_00738
5
+ MSTSPTVTRNDAESRYELHDGGTLLAVLDFRDNGAAVSLNRAFTIPVHRGRGHAAALTAG
6
+ AVEDIETNGGPAGGRRIVPMCWYVAQWFDEHPEKSALLAPR
7
+ >PROKKA_01865
8
+ MTARDAAGGPAVTRNDAESRYELHDGGTLLAVLDYRDNGTAVALTRAFTIPVHRGHGHAA
9
+ TLTAGAVEDIEARGGAAGGRQIVPLCWYVAQWLEEHPEKAHLVAPR
10
+ >PROKKA_01758
11
+ MDASDSPTTFTRNDAASRYELHDASGELLAALDYRDNGTAVSLTRAFTVPVHRRQGHAAT
12
+ LTAGAVADIEARGGAAGGTTVVPMCWYVARWFEEHPEKAGLLDAR
13
+ >PROKKA_00967
14
+ MTTGGCPGMSTSPTVTRNDAESRYELHDGGTLLAVLDFRDNGAAVSLNRAFTIPVHRGRG
15
+ HAAALTAGAVEDIATNGGPAGGRRIVPMCWYVAQWFDEHPEKSALLAPH
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/Orthogroup_Sequences/OG0000894.fa ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >PROKKA_01078
2
+ MKTFDELYAELTRKVQERPEGSGTVAQIDAGVHAIGKKVVEEAAEVWMAAEYESDEAAAE
3
+ EISQLLYHVQTMMIARGISLEDVYRHL
4
+ >PROKKA_00797
5
+ MKTFDELYAELTRKVQERPEGSGTVAQIDAGVHAIGKKVVEEAAEVWMAAEYESDEAAAE
6
+ EISQLLYHVQTMMIARGISLEDVYRHL
7
+ >PROKKA_01820
8
+ MKTFDELYAELTRKVQERPEGSGTVAQIDAGVHAIGKKVVEEAAEVWMAAEYESDEAAAE
9
+ EISQLLYHVQTMMIARGIALEDVYRHL
10
+ >PROKKA_01707
11
+ MKTFEELFAELTRKVAERPEGSGTVAQIDAGVHAIGKKIVEEAAEVWMAAEYESHDAAAE
12
+ EISQLLYHVQTMMIAKGIGLKDVYRHL
13
+ >PROKKA_01027
14
+ MKTFDELYAELTRKVQERPEGSGTVAQIDAGVHAIGKKVVEEAAEVWMAAEYESDEAAAE
15
+ EISQLLYHVQTMMIARGISLEDVYRHL