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  1. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000001_tree_id.txt +1 -0
  2. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000002_tree_id.txt +1 -0
  3. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000008_tree_id.txt +1 -0
  4. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000009_tree_id.txt +1 -0
  5. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000010_tree_id.txt +1 -0
  6. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000011_tree_id.txt +1 -0
  7. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000013_tree_id.txt +1 -0
  8. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000015_tree_id.txt +1 -0
  9. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000016_tree_id.txt +1 -0
  10. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000017_tree_id.txt +1 -0
  11. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000018_tree_id.txt +1 -0
  12. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000022_tree_id.txt +1 -0
  13. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000023_tree_id.txt +1 -0
  14. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000024_tree_id.txt +1 -0
  15. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000026_tree_id.txt +1 -0
  16. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000028_tree_id.txt +1 -0
  17. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000031_tree_id.txt +1 -0
  18. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000032_tree_id.txt +1 -0
  19. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000033_tree_id.txt +1 -0
  20. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000034_tree_id.txt +1 -0
  21. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000035_tree_id.txt +1 -0
  22. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000038_tree_id.txt +1 -0
  23. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000039_tree_id.txt +1 -0
  24. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000041_tree_id.txt +1 -0
  25. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000044_tree_id.txt +1 -0
  26. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000046_tree_id.txt +1 -0
  27. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000047_tree_id.txt +1 -0
  28. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000049_tree_id.txt +1 -0
  29. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000050_tree_id.txt +1 -0
  30. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000051_tree_id.txt +1 -0
  31. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000054_tree_id.txt +1 -0
  32. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000055_tree_id.txt +1 -0
  33. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000060_tree_id.txt +1 -0
  34. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000061_tree_id.txt +1 -0
  35. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000066_tree_id.txt +1 -0
  36. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000068_tree_id.txt +1 -0
  37. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000072_tree_id.txt +1 -0
  38. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000077_tree_id.txt +1 -0
  39. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000078_tree_id.txt +1 -0
  40. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000081_tree_id.txt +1 -0
  41. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000082_tree_id.txt +1 -0
  42. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000084_tree_id.txt +1 -0
  43. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000085_tree_id.txt +1 -0
  44. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000086_tree_id.txt +1 -0
  45. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000088_tree_id.txt +1 -0
  46. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000091_tree_id.txt +1 -0
  47. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000095_tree_id.txt +1 -0
  48. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000097_tree_id.txt +1 -0
  49. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000098_tree_id.txt +1 -0
  50. Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000102_tree_id.txt +1 -0
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000001_tree_id.txt ADDED
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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000002_tree_id.txt ADDED
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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000008_tree_id.txt ADDED
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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000009_tree_id.txt ADDED
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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000010_tree_id.txt ADDED
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1
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Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000028_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (1_755:0.003214757,2_707:0.003213134,((0_1027:0.0,1_319:0.0,1_332:0.0,4_976:0.0):0.000000005,0_154:0.000000005)0.000:0.000000005);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000031_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_1359:0.002877707,(1_1098:0.0,4_1308:0.0):0.000000005,(2_1459:0.019020243,(3_1370:0.000000005,(0_164:1.135501050,3_2178:1.407146710)0.911:0.416749229)0.995:0.061917083)0.933:0.020353106);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000032_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (2_115:0.011985812,4_236:0.010452135,(1_2199:0.000000005,(0_236:0.000000005,(3_84:0.213838419,(1_84:0.753052074,1_88:0.999710540)0.987:0.423024767)0.978:0.172287977)0.482:0.003668451)0.955:0.014691340);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000033_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_251:0.000000005,4_249:0.004529161,(1_2215:0.006200038,(2_100:0.168365538,(3_68:0.322084255,(2_572:0.963637019,3_507:1.110253120)0.971:0.344305053)0.999:0.370411442)1.000:0.228559943)0.831:0.007530464);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000034_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (2_700:0.008483740,((0_592:0.0,0_2014:0.0):0.005075056,1_1730:0.000000005)0.832:0.007066105,((1_324:0.0,3_2162:0.0):0.015427088,4_1943:0.198197716)0.267:0.000000005);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000035_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_602:0.010135620,(1_356:0.0,4_579:0.0):0.000000005,(3_2137:0.051833311,(2_394:0.000000005,(2_373:0.000000005,2_377:0.030262711)0.834:0.010151309)0.580:0.010108217)0.821:0.000000005);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000038_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (1_1437:0.009752907,4_1649:0.004148329,(0_1720:0.002131851,(3_1003:0.090621132,(2_1078:0.062421825,(0_806:0.127971011,0_807:0.059039245)0.477:0.526808430)0.869:0.045687183)1.000:0.062472050)0.440:0.003476338);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000039_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((2_2002:0.691889313,(0_851:0.008250589,1_582:0.009610451)1.000:0.582420763)1.000:0.561110845,4_812:0.742871995,((0_861:0.027189775,1_592:0.030230085)1.000:0.644883567,3_1900:0.605973166)0.821:0.095131863);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000041_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_1134:0.005291202,4_1084:0.005235306,(1_862:0.008373669,(2_1678:0.366496538,(2_1677:0.254724526,(3_300:0.937968762,3_1575:0.464667982)0.922:0.162915885)0.769:0.078972292)0.760:0.053175892)0.766:0.004929119);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000044_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((2_397:0.025161344,(1_1092:0.000000005,4_1302:0.053372627)0.805:0.007166293)0.748:0.003466790,(3_632:0.0,3_2165:0.0):0.000000005,(0_1353:0.111216408,3_312:0.084218618)0.749:0.002727010);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000046_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_1986:0.003453929,4_1921:0.000000005,(1_1703:0.008217784,(3_715:0.256468139,(3_725:0.372275135,(0_1732:0.006840987,2_1064:0.000000005)1.000:0.667737676)0.946:0.181765391)0.999:0.195326962)0.903:0.019789870);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000047_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_1747:0.006651265,4_1669:0.000000005,(1_1455:0.038318586,(2_1047:0.056251453,(3_983:0.105961576,(2_381:0.217562705,2_2582:0.804782208)0.976:0.171489140)0.998:0.101922158)0.973:0.045716402)0.909:0.017337170);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000049_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((2_818:0.046002917,(3_756:0.035743039,(4_165:0.527291933,4_166:0.595233782)0.852:0.277659455)0.939:0.058517238)1.000:0.053352218,4_1883:0.003326404,(1_1665:0.007861370,0_1944:0.012560216)0.729:0.002899898);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000050_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((2_676:0.018328263,(3_645:1.783688533,(2_1283:0.010591433,3_2185:0.012759250)0.981:0.256159823)0.785:0.090852154)0.829:0.014307361,1_1744:0.000000005,(4_1968:0.020789384,0_2028:0.000000005)0.599:0.009474504);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000051_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_2033:0.040989379,2_666:0.038751200,((1_1752:0.000133362,3_583:0.066633616)0.596:0.017847017,((3_2050:0.508887497,4_1971:0.613186748)0.994:0.624215157,3_582:0.111869333)0.449:0.026364296)0.747:0.013371747);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000054_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_2192:0.007127824,1_1902:0.003003070,((2_470:0.016182436,(4_2124:0.004031907,3_417:0.006076333)0.735:0.001997491)0.866:0.006104434,(0_2214:0.289689808,2_475:0.173257320)0.933:0.157487082)0.756:0.001857403);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000055_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (2_989:0.469058988,3_851:0.717823672,(3_923:0.492378277,(4_708:0.225294060,(3_774:0.083699701,(1_1646:0.013957249,2_836:0.006234928)0.997:0.122743158)0.993:0.231848900)0.998:0.350521709)0.826:0.105665103);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000060_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_59:0.003429734,1_2023:0.027149516,(4_54:0.016550537,(2_191:1.781957831,(3_259:0.128202971,2_317:0.101312677)0.000:0.000000005)0.973:0.138072217)0.655:0.008055982);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000061_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_64:0.000000006,1_2028:0.010665523,(4_58:0.005318665,(2_311:0.075952761,(3_252:0.050777832,3_667:0.781922302)0.769:0.029282341)0.933:0.034351470)0.688:0.006505499);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000066_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_190:0.003311563,3_139:0.000000006,(4_190:0.016621484,(1_2137:0.010156763,(1_1974:1.432226735,2_187:0.150655186)0.965:0.217831028)0.793:0.006432267)1.000:0.000000005);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000068_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((0_208:0.0,1_2152:0.0,4_208:0.0):0.153734442,2_157:0.048672748,(2_2156:0.722161410,3_307:0.848514199)0.933:0.845507966);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000072_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (1_2204:0.004917749,4_241:0.001852616,(0_241:0.006171009,(2_111:0.030119593,(3_79:0.078141714,3_2414:0.394103166)1.000:0.097101257)0.993:0.034630196)0.787:0.007829956);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000077_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_286:0.013001028,4_293:0.008711931,(1_3:0.033880200,(2_50:0.086068837,(3_28:0.090842194,3_1198:2.016793608)0.843:0.116044216)0.965:0.059405261)0.978:0.029602788);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000078_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (1_21:0.005596494,4_304:0.000000005,(0_297:0.002910690,(3_637:1.322455078,(2_22:0.244169503,3_18:0.194341570)0.885:0.073014270)0.931:0.103671235)0.878:0.011243791);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000081_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (1_71:0.001540960,4_353:0.001541832,(0_346:0.004574970,(2_2538:0.041689999,(2_183:1.165161959,3_2397:0.063052357)0.892:0.048328693)0.968:0.019963277)0.858:0.003164498);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000082_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((4_371:0.006630660,(0_365:0.000000005,1_98:0.003468872)0.875:0.003799427)0.848:0.003611571,3_2388:0.034183912,(2_2513:0.029265872,3_1719:0.096210331)0.446:0.005737323);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000084_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_397:0.000000005,4_400:0.001733995,(1_127:0.056171871,(2_2485:0.230212077,(2_2486:0.663339006,3_2354:0.831313542)0.999:0.356889250)0.792:0.072365415)0.951:0.032579821);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000085_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (1_132:0.011873847,4_405:0.006222400,(0_402:0.016594706,(2_2478:0.096929533,(3_2349:0.105028646,2_2479:0.101282615)0.661:0.018405652)0.995:0.078216636)0.916:0.011001015);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000086_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_427:0.000000005,1_157:0.002331144,((2_2453:0.034717800,3_2324:0.065699661)0.998:0.038426227,(3_666:0.970279730,4_430:0.002324367)0.000:0.000010643)1.000:0.000000005);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000088_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (2_2398:0.030372847,4_472:0.020253200,(0_473:0.009171435,(1_203:0.000000005,(2_1196:1.416792867,3_2281:0.102928431)0.949:0.185651102)0.851:0.011216223)0.574:0.004948185);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000091_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ ((2_2346:0.075752697,(2_2347:0.146036538,3_2230:0.417017257)0.913:0.125162743)0.955:0.078889760,0_524:0.003784506,(4_527:0.007117166,1_258:0.010619101)0.763:0.003283313);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000095_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_586:0.133728598,(1_311:0.0,4_1948:0.0):0.068204313,(3_1166:1.394821723,(1_1721:0.289777768,2_2293:0.102409445)0.699:0.035200777)0.615:0.015654377);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000097_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (3_2159:0.044301346,(1_345:0.036354026,2_1285:0.060542884)0.392:0.016198587,(0_595:0.027893804,(3_672:0.050454935,3_2163:1.268604741)0.000:0.000000005)0.595:0.004791247);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000098_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (1_355:0.003387910,4_580:0.006820107,((2_376:0.000000005,2_395:0.047737643)0.911:0.013652555,(0_601:0.126624120,3_2136:0.036623387)0.834:0.008657013)0.957:0.000000005);
Biomni/experiments/bioagent_bench/runs/scale_3000/comparative-genomics_20260520_141735/orthofinder_results/Results_May20/WorkingDirectory/Trees_ids/OG0000102_tree_id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ (0_630:0.000000005,4_600:0.003549917,(1_376:0.000000005,(3_2113:0.245887629,(2_152:1.393793085,2_2257:0.057283058)0.804:0.043512808)0.842:0.021580371)0.844:0.003548822);