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{
"description": "Search protocols.io for public protocols matching a keyword.",
"name": "search_protocols",
"optional_parameters": [],
"required_parameters": [
{
"default": None,
"description": "Most important keyword or phrase to search (title, description, authors)",
"name": "query",
"type": "str",
}
],
},
{
"description": "Retrieve detailed metadata for a specific protocols.io protocol by ID.",
"name": "get_protocol_details",
"optional_parameters": [
{
"default": 30,
"description": "Request timeout in seconds",
"name": "timeout",
"type": "int",
}
],
"required_parameters": [
{
"default": None,
"description": "Numeric protocol ID from protocols.io",
"name": "protocol_id",
"type": "int",
}
],
},
{
"description": "List available protocol files in the local biomni/tool/protocols/ directory. Includes protocols from Addgene and Thermo Fisher Scientific.",
"name": "list_local_protocols",
"optional_parameters": [
{
"default": None,
"description": "Filter by source directory (e.g., 'addgene' or 'thermofisher'). If None, lists all protocols.",
"name": "source",
"type": "str",
}
],
"required_parameters": [],
},
{
"description": "Read the contents of a local protocol file from biomni/tool/protocols/. Use list_local_protocols() first to find available protocol filenames.",
"name": "read_local_protocol",
"optional_parameters": [
{
"default": None,
"description": "Source directory (e.g., 'addgene' or 'thermofisher'). If None, searches all sources.",
"name": "source",
"type": "str",
}
],
"required_parameters": [
{
"default": None,
"description": "Name of the protocol file (e.g., 'Addgene_ Protocol - How to Run an Agarose Gel.txt')",
"name": "filename",
"type": "str",
}
],
},
]
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