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11f4e59 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 | # Configuration file for the Sphinx documentation builder.
#
# For the full list of built-in configuration values, see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html
# -- Project information -----------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
import os
import sys
sys.path.insert(0, os.path.abspath("../../"))
project = "biomni"
copyright = "2025, Biomni"
author = "Biomni"
release = "0.0.8"
# -- General configuration ---------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
extensions = [
"sphinx.ext.autodoc",
"sphinx.ext.napoleon",
"sphinx.ext.viewcode",
]
templates_path = ["_templates"]
exclude_patterns = []
napoleon_use_param = True
autodoc_mock_imports = [
"biomni.agent.base_agent",
"biomni.",
"PyPDF2",
"bioagentos",
"Bio",
"gseapy",
"googlesearch",
"scanpy",
"torch",
"gget",
]
# -- Options for HTML output -------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
html_theme = "sphinx_rtd_theme"
html_static_path = ["_static"]
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