| { |
| "tools": [ |
| { |
| "name": "PLINK 2.0", |
| "function_name": "install_plink2", |
| "description": "Whole genome association analysis toolset", |
| "website": "https://www.cog-genomics.org/plink/2.0/", |
| "downloads": { |
| "linux": "https://s3.amazonaws.com/plink2-assets/alpha6/plink2_linux_avx2_20250129.zip", |
| "macos_intel": "https://s3.amazonaws.com/plink2-assets/alpha6/plink2_mac_avx2_20250129.zip", |
| "macos_arm64": "https://s3.amazonaws.com/plink2-assets/alpha6/plink2_mac_arm64_20250129.zip" |
| }, |
| "binary_path": "plink2", |
| "version_command": "--version" |
| }, |
| { |
| "name": "IQ-TREE", |
| "function_name": "install_iqtree", |
| "description": "Efficient phylogenetic software by maximum likelihood", |
| "website": "http://www.iqtree.org/", |
| "downloads": { |
| "linux": "https://github.com/iqtree/iqtree2/releases/download/v2.2.2.7/iqtree-2.2.2.7-Linux.tar.gz", |
| "macos_intel": "https://github.com/iqtree/iqtree2/releases/download/v2.2.2.7/iqtree-2.2.2.7-MacOSX.zip", |
| "macos_arm64": "https://github.com/iqtree/iqtree2/releases/download/v2.2.2.7/iqtree-2.2.2.7-MacOSX.zip" |
| }, |
| "binary_path": "bin/iqtree2", |
| "version_command": "--version" |
| }, |
| { |
| "name": "GCTA", |
| "function_name": "install_gcta", |
| "description": "Genome-wide Complex Trait Analysis", |
| "website": "https://yanglab.westlake.edu.cn/software/gcta/", |
| "downloads": { |
| "linux": "https://yanglab.westlake.edu.cn/software/gcta/bin/gcta-1.94.4-linux-kernel-3-x86_64.zip", |
| "macos_intel": "https://yanglab.westlake.edu.cn/software/gcta/bin/gcta-1.94.1-macOS-x86_64.zip", |
| "macos_arm64": "https://yanglab.westlake.edu.cn/software/gcta/bin/gcta-1.94.3-macOS-arm64.zip" |
| }, |
| "binary_path": "gcta64", |
| "version_command": "" |
| }, |
| { |
| "name": "BWA", |
| "function_name": "install_bwa", |
| "description": "Burrow-Wheeler Aligner for short-read alignment", |
| "website": "https://github.com/lh3/bwa", |
| "downloads": { |
| "linux": "https://github.com/lh3/bwa.git", |
| "macos_intel": "https://github.com/lh3/bwa.git", |
| "macos_arm64": "https://github.com/lh3/bwa.git" |
| }, |
| "binary_path": "bwa", |
| "version_command": "" |
| }, |
| { |
| "name": "FastTree", |
| "function_name": "install_fasttree", |
| "description": "Approximately-Maximum-Likelihood phylogenetic trees from alignments", |
| "website": "https://morgannprice.github.io/fasttree/", |
| "downloads": { |
| "linux": "https://morgannprice.github.io/fasttree/FastTree.c", |
| "macos_intel": "https://morgannprice.github.io/fasttree/FastTree.c", |
| "macos_arm64": "https://morgannprice.github.io/fasttree/FastTree.c" |
| }, |
| "binary_path": "FastTree", |
| "version_command": "-help | head -n 2" |
| }, |
| { |
| "name": "MUSCLE", |
| "function_name": "install_muscle", |
| "description": "Multiple sequence alignment with high accuracy and performance", |
| "website": "https://github.com/rcedgar/muscle", |
| "downloads": { |
| "linux": "https://github.com/rcedgar/muscle/releases/download/v5.3/muscle-linux-x86.v5.3", |
| "macos_arm64": "https://github.com/rcedgar/muscle/releases/download/v5.3/muscle-osx-arm64.v5.3" |
| }, |
| "binary_path": "muscle", |
| "version_command": "-version" |
| }, |
| { |
| "name": "HOMER", |
| "function_name": "install_homer", |
| "description": "Software for motif discovery and next-gen sequencing analysis", |
| "website": "http://homer.ucsd.edu/homer/", |
| "downloads": { |
| "linux": "http://homer.ucsd.edu/homer/configureHomer.pl", |
| "macos_intel": "http://homer.ucsd.edu/homer/configureHomer.pl", |
| "macos_arm64": "http://homer.ucsd.edu/homer/configureHomer.pl" |
| }, |
| "binary_path": "bin/findMotifs.pl", |
| "version_command": "-h" |
| } |
| ] |
| } |
|
|
